Genomic Comparison and Population Diversity Analysis Provide Insights into the Domestication and Improvement of Flax

Flax has been cultivated for its oil and fiber for thousands of years. However, it remains unclear how the modifications of agronomic traits occurred on the genetic level during flax cultivation. In this study, we conducted genome-wide variation analyses on multiple accessions of oil-use, fiber-use,...

Full description

Saved in:
Bibliographic Details
Published iniScience Vol. 23; no. 4; p. 100967
Main Authors Zhang, Jianping, Qi, Yanni, Wang, Limin, Wang, Lili, Yan, Xingchu, Dang, Zhao, Li, Wenjuan, Zhao, Wei, Pei, Xinwu, Li, Xuming, Liu, Min, Tan, Meilian, Wang, Lei, Long, Yan, Wang, Jing, Zhang, Xuewen, Dang, Zhanhai, Zheng, Hongkun, Liu, Touming
Format Journal Article
LanguageEnglish
Published United States Elsevier Inc 24.04.2020
Elsevier
Subjects
Biological Sciences
Evolutionary Biology
Genomics
Plant Evolution
Plant Genetics
Plant Evolution
Biological Sciences
Evolutionary Biology
Plant Genetics
Genomics
Online AccessGet full text
ISSN2589-0042
2589-0042
DOI10.1016/j.isci.2020.100967

Cover

Abstract Flax has been cultivated for its oil and fiber for thousands of years. However, it remains unclear how the modifications of agronomic traits occurred on the genetic level during flax cultivation. In this study, we conducted genome-wide variation analyses on multiple accessions of oil-use, fiber-use, landraces, and pale flax to identify the genomic variations during flax cultivation. Our findings indicate that, during flax domestication, genes relevant to flowering, dehiscence, oil production, and plant architecture were preferentially selected. Furthermore, regardless of origins, the improvement of the modern oil-use flax preceded that of the fiber-use flax, although the dual selection on oil-use and fiber-use characteristics might have occurred in the early flax domestication. We also found that the expansion of MYB46/MYB83 genes may have contributed to the unique secondary cell wall biosynthesis in flax and the directional selections on MYB46/MYB83 may have shaped the morphological profile of the current oil-use and fiber-use flax. [Display omitted] •Assemblies of genomes, including oil-use flax, fiber-use flax and pale flax•Comparative genomic analysis between pale flax and cultivated flax•Dual-selection mode on oil-use and fiber-use characteristics might be existing•Expansion and selection of MYB46/MYB83 may shape the morphological profile of flax Biological Sciences; Evolutionary Biology; Genomics; Plant Evolution; Plant Genetics
AbstractList Flax has been cultivated for its oil and fiber for thousands of years. However, it remains unclear how the modifications of agronomic traits occurred on the genetic level during flax cultivation. In this study, we conducted genome-wide variation analyses on multiple accessions of oil-use, fiber-use, landraces, and pale flax to identify the genomic variations during flax cultivation. Our findings indicate that, during flax domestication, genes relevant to flowering, dehiscence, oil production, and plant architecture were preferentially selected. Furthermore, regardless of origins, the improvement of the modern oil-use flax preceded that of the fiber-use flax, although the dual selection on oil-use and fiber-use characteristics might have occurred in the early flax domestication. We also found that the expansion of MYB46/MYB83 genes may have contributed to the unique secondary cell wall biosynthesis in flax and the directional selections on MYB46/MYB83 may have shaped the morphological profile of the current oil-use and fiber-use flax.Flax has been cultivated for its oil and fiber for thousands of years. However, it remains unclear how the modifications of agronomic traits occurred on the genetic level during flax cultivation. In this study, we conducted genome-wide variation analyses on multiple accessions of oil-use, fiber-use, landraces, and pale flax to identify the genomic variations during flax cultivation. Our findings indicate that, during flax domestication, genes relevant to flowering, dehiscence, oil production, and plant architecture were preferentially selected. Furthermore, regardless of origins, the improvement of the modern oil-use flax preceded that of the fiber-use flax, although the dual selection on oil-use and fiber-use characteristics might have occurred in the early flax domestication. We also found that the expansion of MYB46/MYB83 genes may have contributed to the unique secondary cell wall biosynthesis in flax and the directional selections on MYB46/MYB83 may have shaped the morphological profile of the current oil-use and fiber-use flax.
Flax has been cultivated for its oil and fiber for thousands of years. However, it remains unclear how the modifications of agronomic traits occurred on the genetic level during flax cultivation. In this study, we conducted genome-wide variation analyses on multiple accessions of oil-use, fiber-use, landraces, and pale flax to identify the genomic variations during flax cultivation. Our findings indicate that, during flax domestication, genes relevant to flowering, dehiscence, oil production, and plant architecture were preferentially selected. Furthermore, regardless of origins, the improvement of the modern oil-use flax preceded that of the fiber-use flax, although the dual selection on oil-use and fiber-use characteristics might have occurred in the early flax domestication. We also found that the expansion of MYB46/MYB83 genes may have contributed to the unique secondary cell wall biosynthesis in flax and the directional selections on MYB46/MYB83 may have shaped the morphological profile of the current oil-use and fiber-use flax. [Display omitted] •Assemblies of genomes, including oil-use flax, fiber-use flax and pale flax•Comparative genomic analysis between pale flax and cultivated flax•Dual-selection mode on oil-use and fiber-use characteristics might be existing•Expansion and selection of MYB46/MYB83 may shape the morphological profile of flax Biological Sciences; Evolutionary Biology; Genomics; Plant Evolution; Plant Genetics
Flax has been cultivated for its oil and fiber for thousands of years. However, it remains unclear how the modifications of agronomic traits occurred on the genetic level during flax cultivation. In this study, we conducted genome-wide variation analyses on multiple accessions of oil-use, fiber-use, landraces, and pale flax to identify the genomic variations during flax cultivation. Our findings indicate that, during flax domestication, genes relevant to flowering, dehiscence, oil production, and plant architecture were preferentially selected. Furthermore, regardless of origins, the improvement of the modern oil-use flax preceded that of the fiber-use flax, although the dual selection on oil-use and fiber-use characteristics might have occurred in the early flax domestication. We also found that the expansion of MYB46/MYB83 genes may have contributed to the unique secondary cell wall biosynthesis in flax and the directional selections on MYB46/MYB83 may have shaped the morphological profile of the current oil-use and fiber-use flax. : Biological Sciences; Evolutionary Biology; Genomics; Plant Evolution; Plant Genetics Subject Areas: Biological Sciences, Evolutionary Biology, Genomics, Plant Evolution, Plant Genetics
Flax has been cultivated for its oil and fiber for thousands of years. However, it remains unclear how the modifications of agronomic traits occurred on the genetic level during flax cultivation. In this study, we conducted genome-wide variation analyses on multiple accessions of oil-use, fiber-use, landraces, and pale flax to identify the genomic variations during flax cultivation. Our findings indicate that, during flax domestication, genes relevant to flowering, dehiscence, oil production, and plant architecture were preferentially selected. Furthermore, regardless of origins, the improvement of the modern oil-use flax preceded that of the fiber-use flax, although the dual selection on oil-use and fiber-use characteristics might have occurred in the early flax domestication. We also found that the expansion of MYB46/MYB83 genes may have contributed to the unique secondary cell wall biosynthesis in flax and the directional selections on MYB46/MYB83 may have shaped the morphological profile of the current oil-use and fiber-use flax. • Assemblies of genomes, including oil-use flax, fiber-use flax and pale flax • Comparative genomic analysis between pale flax and cultivated flax • Dual-selection mode on oil-use and fiber-use characteristics might be existing • Expansion and selection of MYB46/MYB83 may shape the morphological profile of flax Biological Sciences; Evolutionary Biology; Genomics; Plant Evolution; Plant Genetics
Flax has been cultivated for its oil and fiber for thousands of years. However, it remains unclear how the modifications of agronomic traits occurred on the genetic level during flax cultivation. In this study, we conducted genome-wide variation analyses on multiple accessions of oil-use, fiber-use, landraces, and pale flax to identify the genomic variations during flax cultivation. Our findings indicate that, during flax domestication, genes relevant to flowering, dehiscence, oil production, and plant architecture were preferentially selected. Furthermore, regardless of origins, the improvement of the modern oil-use flax preceded that of the fiber-use flax, although the dual selection on oil-use and fiber-use characteristics might have occurred in the early flax domestication. We also found that the expansion of MYB46/MYB83 genes may have contributed to the unique secondary cell wall biosynthesis in flax and the directional selections on MYB46/MYB83 may have shaped the morphological profile of the current oil-use and fiber-use flax.
ArticleNumber 100967
Author Zhao, Wei
Dang, Zhanhai
Li, Wenjuan
Wang, Limin
Zhang, Jianping
Long, Yan
Li, Xuming
Liu, Min
Zheng, Hongkun
Wang, Jing
Wang, Lili
Dang, Zhao
Qi, Yanni
Pei, Xinwu
Zhang, Xuewen
Wang, Lei
Tan, Meilian
Yan, Xingchu
Liu, Touming
AuthorAffiliation 5 Institute of Biotechnology, Chinese Academy of Agricultural Sciences, Beijing, China
3 Biomarker Technologies Corporation, Beijing, China
2 Institute of Bast Fiber Crops and Center of Southern Economic Crops, Chinese Academy of Agricultural Sciences, Changsha, Hunan, China
4 Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan, Hubei, China
1 Institute of Crop Research, Gansu Academy of Agricultural Sciences, Lanzhou, Gansu, China
AuthorAffiliation_xml – name: 1 Institute of Crop Research, Gansu Academy of Agricultural Sciences, Lanzhou, Gansu, China
– name: 4 Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan, Hubei, China
– name: 2 Institute of Bast Fiber Crops and Center of Southern Economic Crops, Chinese Academy of Agricultural Sciences, Changsha, Hunan, China
– name: 3 Biomarker Technologies Corporation, Beijing, China
– name: 5 Institute of Biotechnology, Chinese Academy of Agricultural Sciences, Beijing, China
Author_xml – sequence: 1
  givenname: Jianping
  surname: Zhang
  fullname: Zhang, Jianping
  email: zhangjpzw3@gsagr.ac.cn
  organization: Institute of Crop Research, Gansu Academy of Agricultural Sciences, Lanzhou, Gansu, China
– sequence: 2
  givenname: Yanni
  surname: Qi
  fullname: Qi, Yanni
  organization: Institute of Crop Research, Gansu Academy of Agricultural Sciences, Lanzhou, Gansu, China
– sequence: 3
  givenname: Limin
  surname: Wang
  fullname: Wang, Limin
  organization: Institute of Crop Research, Gansu Academy of Agricultural Sciences, Lanzhou, Gansu, China
– sequence: 4
  givenname: Lili
  surname: Wang
  fullname: Wang, Lili
  organization: Biomarker Technologies Corporation, Beijing, China
– sequence: 5
  givenname: Xingchu
  surname: Yan
  fullname: Yan, Xingchu
  organization: Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan, Hubei, China
– sequence: 6
  givenname: Zhao
  surname: Dang
  fullname: Dang, Zhao
  organization: Institute of Crop Research, Gansu Academy of Agricultural Sciences, Lanzhou, Gansu, China
– sequence: 7
  givenname: Wenjuan
  surname: Li
  fullname: Li, Wenjuan
  organization: Institute of Crop Research, Gansu Academy of Agricultural Sciences, Lanzhou, Gansu, China
– sequence: 8
  givenname: Wei
  surname: Zhao
  fullname: Zhao, Wei
  organization: Institute of Crop Research, Gansu Academy of Agricultural Sciences, Lanzhou, Gansu, China
– sequence: 9
  givenname: Xinwu
  surname: Pei
  fullname: Pei, Xinwu
  organization: Institute of Biotechnology, Chinese Academy of Agricultural Sciences, Beijing, China
– sequence: 10
  givenname: Xuming
  surname: Li
  fullname: Li, Xuming
  organization: Biomarker Technologies Corporation, Beijing, China
– sequence: 11
  givenname: Min
  surname: Liu
  fullname: Liu, Min
  organization: Biomarker Technologies Corporation, Beijing, China
– sequence: 12
  givenname: Meilian
  surname: Tan
  fullname: Tan, Meilian
  organization: Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan, Hubei, China
– sequence: 13
  givenname: Lei
  surname: Wang
  fullname: Wang, Lei
  organization: Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan, Hubei, China
– sequence: 14
  givenname: Yan
  surname: Long
  fullname: Long, Yan
  organization: Institute of Biotechnology, Chinese Academy of Agricultural Sciences, Beijing, China
– sequence: 15
  givenname: Jing
  surname: Wang
  fullname: Wang, Jing
  organization: Biomarker Technologies Corporation, Beijing, China
– sequence: 16
  givenname: Xuewen
  surname: Zhang
  fullname: Zhang, Xuewen
  organization: Biomarker Technologies Corporation, Beijing, China
– sequence: 17
  givenname: Zhanhai
  surname: Dang
  fullname: Dang, Zhanhai
  email: 13669338239@163.com
  organization: Institute of Crop Research, Gansu Academy of Agricultural Sciences, Lanzhou, Gansu, China
– sequence: 18
  givenname: Hongkun
  surname: Zheng
  fullname: Zheng, Hongkun
  email: zhenghk@biomarker.com.cn
  organization: Biomarker Technologies Corporation, Beijing, China
– sequence: 19
  givenname: Touming
  surname: Liu
  fullname: Liu, Touming
  email: liutouming@caas.cn
  organization: Institute of Bast Fiber Crops and Center of Southern Economic Crops, Chinese Academy of Agricultural Sciences, Changsha, Hunan, China
BackLink https://www.ncbi.nlm.nih.gov/pubmed/32240956$$D View this record in MEDLINE/PubMed
BookMark eNp9Uk1vEzEQtVARLaV_gAPykUuCv_ZLQkhVSkukSvQAZ8uZnU0c7drBdqLm3-PttqjlUPlge_zeG8_Me09OnHdIyEfO5pzx8st2biPYuWBiDLCmrN6QM1HUzYwxJU6enU_JRYxbxjKSCdWU78ipFEKxpijPSLpB5wcLdOGHnQk2ekeNa-md3-17k2y-XtkDhmjTkV460x-jjfQu-INtkS5dtOtNitS65GnaIL3yA8ZkYaKOSsthl9E4oEvUd_S6N_cfyNvO9BEvHvdz8vv6-6_Fj9ntz5vl4vJ2BoXgadaqvETHlTTMYFcWUK9EI03F6xokh7pWgLURnQTGRQFtVxWyKiosTa67UvKcLCfd1put3gU7mHDU3lj9EPBhrU3In-1RN8A6paAD0TDFW2igllDASgm-UiXDrPVt0trtVwO2kMsJpn8h-vLF2Y1e-4OuOFcNa7LA50eB4P_sc5P0kCeIfW8c-n3UQtalqEopygz99DzXvyRPY8uAegJA8DEG7DTY9NDynNr2mjM9mkRv9WgSPZpETybJVPEf9Un9VdLXiYR5WgeLQWcEOsDWBoSU22lfo_8FvmvXLA
CitedBy_id crossref_primary_10_3390_agronomy12061432
crossref_primary_10_3390_plants10122616
crossref_primary_10_1111_tpj_15411
crossref_primary_10_1007_s00438_021_01785_y
crossref_primary_10_3390_plants12152773
crossref_primary_10_3389_fpls_2021_764612
crossref_primary_10_3389_fpls_2022_871633
crossref_primary_10_3390_genes13101904
crossref_primary_10_1186_s40643_024_00799_9
crossref_primary_10_1038_s41598_024_53462_w
crossref_primary_10_3390_ijms241914885
crossref_primary_10_3389_fgene_2023_1269837
crossref_primary_10_3390_plants12213725
crossref_primary_10_3389_fgene_2021_735690
crossref_primary_10_3390_plants13243465
crossref_primary_10_3389_fgene_2020_590282
crossref_primary_10_3389_fpls_2023_1228755
crossref_primary_10_3390_ijms232113244
crossref_primary_10_3390_ijms241311006
crossref_primary_10_1134_S102279542314003X
crossref_primary_10_1111_tpj_15346
crossref_primary_10_1038_s41598_025_89498_9
crossref_primary_10_1080_13102818_2020_1825122
crossref_primary_10_1093_jxb_erab472
crossref_primary_10_1016_j_indcrop_2022_115720
crossref_primary_10_3390_life14010141
crossref_primary_10_3389_fnut_2023_1165580
crossref_primary_10_3390_plants11050652
crossref_primary_10_3389_fpls_2022_1044415
Cites_doi 10.1038/cr.2009.123
10.1093/pcp/pcr185
10.1016/S0960-9822(01)00593-0
10.1038/ng.3748
10.1105/tpc.110.074609
10.1007/BF02431261
10.1073/pnas.1418307111
10.3389/fpls.2018.00260
10.1007/s00122-005-0103-3
10.1073/pnas.1400975111
10.1093/pcp/pcp139
10.1105/tpc.110.077990
10.1038/s41467-017-00336-7
10.1002/ece3.101
10.1038/ng.3872
10.1038/s41477-018-0329-0
10.1007/s10722-010-9650-9
10.1007/s00122-015-2483-3
10.1023/A:1014716031095
10.1038/s41467-019-09142-9
10.1038/nbt.3535
10.1038/s41588-018-0040-0
10.1016/j.tplants.2010.12.005
10.1007/s11032-011-9670-y
10.1038/nbt.2979
10.1186/s12864-018-4899-z
10.1038/47005
10.1038/nature22380
10.1016/j.molp.2018.06.001
10.1126/science.130.3372.365
10.1038/ncomms13390
10.1038/s41467-017-02063-5
10.1111/j.1365-313X.2012.05093.x
10.1023/A:1015571700673
10.1186/s13068-018-1049-4
10.1002/ece3.57
10.1111/j.1755-0998.2011.03100.x
10.1093/pcp/pcu140
10.1007/s11032-010-9494-1
10.1007/s00122-011-1539-2
10.1007/s00122-014-2264-4
10.1186/s13059-017-1167-5
10.1111/tpj.13944
10.1038/s41588-019-0410-2
10.1038/ng.3046
10.1016/0305-4403(75)90059-X
10.1105/tpc.107.053678
ContentType Journal Article
Copyright 2020 The Author(s)
Copyright © 2020 The Author(s). Published by Elsevier Inc. All rights reserved.
2020 The Author(s) 2020
Copyright_xml – notice: 2020 The Author(s)
– notice: Copyright © 2020 The Author(s). Published by Elsevier Inc. All rights reserved.
– notice: 2020 The Author(s) 2020
DBID 6I.
AAFTH
AAYXX
CITATION
NPM
7X8
5PM
DOA
DOI 10.1016/j.isci.2020.100967
DatabaseName ScienceDirect Open Access Titles
Elsevier:ScienceDirect:Open Access
CrossRef
PubMed
MEDLINE - Academic
PubMed Central (Full Participant titles)
DOAJ Directory of Open Access Journals
DatabaseTitle CrossRef
PubMed
MEDLINE - Academic
DatabaseTitleList MEDLINE - Academic



PubMed
Database_xml – sequence: 1
  dbid: DOA
  name: DOAJ Directory of Open Access Journals
  url: https://www.doaj.org/
  sourceTypes: Open Website
– sequence: 2
  dbid: NPM
  name: PubMed
  url: https://proxy.k.utb.cz/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed
  sourceTypes: Index Database
DeliveryMethod fulltext_linktorsrc
EISSN 2589-0042
ExternalDocumentID oai_doaj_org_article_9c0f44cfc29041dc9c83c5cb421b460e
PMC7114909
32240956
10_1016_j_isci_2020_100967
S2589004220301516
Genre Journal Article
GroupedDBID 0R~
53G
6I.
AACTN
AAEDW
AAFTH
AALRI
AAMRU
AAXUO
ABMAC
ADBBV
ADVLN
AEXQZ
AFTJW
AITUG
ALMA_UNASSIGNED_HOLDINGS
AMRAJ
AOIJS
BCNDV
EBS
FDB
GROUPED_DOAJ
HYE
M41
OK1
ROL
RPM
SSZ
AAYWO
AAYXX
ACVFH
ADCNI
AEUPX
AFPUW
AIGII
AKBMS
AKYEP
APXCP
CITATION
EJD
NCXOZ
NPM
7X8
5PM
ID FETCH-LOGICAL-c521t-d4d4d2f143a0aef65c8b293a7188c31c884ce8a2f3c0125cdf753757e6a004743
IEDL.DBID DOA
ISSN 2589-0042
IngestDate Wed Aug 27 01:32:08 EDT 2025
Thu Aug 21 18:22:30 EDT 2025
Fri Jul 11 07:41:19 EDT 2025
Thu Jan 02 22:57:38 EST 2025
Tue Jul 01 01:03:28 EDT 2025
Thu Apr 24 22:57:52 EDT 2025
Sun Apr 06 06:53:08 EDT 2025
IsDoiOpenAccess true
IsOpenAccess true
IsPeerReviewed true
IsScholarly true
Issue 4
Keywords Plant Evolution
Biological Sciences
Evolutionary Biology
Plant Genetics
Genomics
Language English
License This is an open access article under the CC BY-NC-ND license.
Copyright © 2020 The Author(s). Published by Elsevier Inc. All rights reserved.
This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
LinkModel DirectLink
MergedId FETCHMERGED-LOGICAL-c521t-d4d4d2f143a0aef65c8b293a7188c31c884ce8a2f3c0125cdf753757e6a004743
Notes ObjectType-Article-1
SourceType-Scholarly Journals-1
ObjectType-Feature-2
content type line 23
Lead Contact
These authors contributed equally
OpenAccessLink https://doaj.org/article/9c0f44cfc29041dc9c83c5cb421b460e
PMID 32240956
PQID 2386276326
PQPubID 23479
ParticipantIDs doaj_primary_oai_doaj_org_article_9c0f44cfc29041dc9c83c5cb421b460e
pubmedcentral_primary_oai_pubmedcentral_nih_gov_7114909
proquest_miscellaneous_2386276326
pubmed_primary_32240956
crossref_citationtrail_10_1016_j_isci_2020_100967
crossref_primary_10_1016_j_isci_2020_100967
elsevier_sciencedirect_doi_10_1016_j_isci_2020_100967
ProviderPackageCode CITATION
AAYXX
PublicationCentury 2000
PublicationDate 2020-04-24
PublicationDateYYYYMMDD 2020-04-24
PublicationDate_xml – month: 04
  year: 2020
  text: 2020-04-24
  day: 24
PublicationDecade 2020
PublicationPlace United States
PublicationPlace_xml – name: United States
PublicationTitle iScience
PublicationTitleAlternate iScience
PublicationYear 2020
Publisher Elsevier Inc
Elsevier
Publisher_xml – name: Elsevier Inc
– name: Elsevier
References Diederichsen, Hammer (bib18) 1995; 42
Gao, Gonda, Sun, Ma, Bao, Tieman, Burzynski-Chang, Fish, Stromberg, Sacks (bib30) 2019; 51
Hillman (bib43) 1975
Smykal, Bacova-Kerteszova, Kalendar, Corander, Schulman, Pavelek (bib72) 2011; 122
Zhong, Ye (bib106) 2015; 56
Tang, Xu, Ma, Wang, Liu, Wan, Shan (bib80) 2018; 9
Hübner, Bercovich, Todesco, Mandel, Odenheimer, Ziegler, Lee, Baute, Owens, Grassa (bib44) 2019; 5
Zohary, Hopf (bib109) 2000
Fu, Diederichsen, Allaby (bib27) 2012; 2
Zhang, Zhu, Xia, Shi, Liu, Zhang, Liu, Jiang, Zhao, Mao (bib103) 2014; 111
van Zeist, Bakker-Heeres (bib87) 1975; 2
Bolger, Scossa, Bolger, Lanz, Maumus, Tohge, Quesneville, Alseekh, Sorensen, Lichtenstein (bib10) 2014; 46
Li, Zhou, Ma, Jiang, Jin, Zhang, Guo, Zhang, Sui, Zheng (bib57) 2014; 32
Wang, Hobson, Galindo, Zhu, Shi, McDill, Yang, Hawkins, Neutelings, Datla (bib91) 2012; 72
Golicz, Bayer, Barker, Edger, Kim, Martinez, Chan, Severn-Ellis, McCombie, Parkin (bib34) 2016; 7
Zhao, Dixon (bib104) 2011; 16
Zhu, Xie, Chen, Lee, Logue, Scheller (bib108) 2018; 11
Fu (bib24) 2011; 58
Simpson, Laurie, Dijkwel, Quesada, Stockwell, Dean, Macknight (bib71) 2010; 22
Kumar, You, Duguid, Booker, Rowland, Cloutier (bib53) 2015; 128
Gill (bib32) 1987
Allaby, Peterson, Merriwether, Fu (bib2) 2005; 112
Soto-Cerda, Duguid, Booker, Rowland, Diederichsen, Cloutier (bib73) 2014; 127
Rajani, Sundaresan (bib69) 2001; 11
Varshney, Saxena, Upadhyaya, Khan, Yu, Kim, Rathore, Kim, Kim, An (bib88) 2017; 49
Cloutier, Ragupathy, Niu, Duguid (bib15) 2011; 28
Fu (bib25) 2012; 2
Helback (bib42) 1959; 130
Xie, Dai, Yang, Tang, Sun, Yang, Song, Lu, Zhao, Zhang (bib94) 2018; 19
Fu, Diederichsen, Richards, Peterson (bib28) 2002; 49
Wang, He, Huang, He, Yang, Zeng, Deng, Jiang, Fang, Wen (bib89) 2018; 11
Xie, Chung, Li, Wong, Wang, Liu, Wang, Leung, Wong, Tong (bib95) 2019; 10
Zhong, Richardson, Ye (bib107) 2007; 19
Zhong, Ye (bib105) 2012; 53
Xie, Lee, Lucas, Morohashi, Li, Murray, Sack, Grotewold (bib96) 2010; 22
Qin, Yu, Shen, Fang, Chen, Min, Cheng, Zhao, Xu, Luo (bib68) 2014; 111
Duan, Bai, Sun, Wang, Ma, Li, Wang, Jiao, Legall, Mao (bib19) 2017; 8
McCarthy, Zhong, Ye (bib61) 2009; 50
Fu, Peterson, Diederichsen, Richards (bib29) 2002; 49
Gill (bib31) 1966
Tammes (bib78) 1928; 4
Soto-Cerda, Maureira-Butler, Muñoz, Rupayan, Cloutier (bib74) 2012; 30
Stein, Yu, Copetti, Zwickl, Zhang, Zhang, Chougule, Gao, Iwata, Goicoechea (bib76) 2018; 50
Cominelli, Tonelli (bib16) 2009; 19
You, Xiao, Li, Yao, Jia, He, Zhu, Luo, Wang, Deyholos (bib100) 2018; 95
Fang, Gong, Hu, Liu, Zhou, Huang, Wang, Chen, Fang, Du (bib23) 2017; 18
Badouin, Gouzy, Grassa, Murat, Staton, Cottret, Lelandais-Briere, Owens, Carrere, Mayjonade (bib5) 2017; 546
Bredeson, Lyons, Prochnik, Wu, Ha, Edsinger-Gonzales, Grimwood, Schmutz, Rabbi, Egesi (bib11) 2016; 34
Yang, Xu, Wang, Peng, Cai, Song, Li, Luo, Niu, Wang (bib98) 2017; 8
Fu, Peterson (bib26) 2012; 12
Kleman, Hättestrand (bib50) 1999; 402
Terhorst, Kamm, Song (bib84) 2017; 49
Fang (10.1016/j.isci.2020.100967_bib23) 2017; 18
Fu (10.1016/j.isci.2020.100967_bib26) 2012; 12
Allaby (10.1016/j.isci.2020.100967_bib2) 2005; 112
Fu (10.1016/j.isci.2020.100967_bib25) 2012; 2
Terhorst (10.1016/j.isci.2020.100967_bib84) 2017; 49
Wang (10.1016/j.isci.2020.100967_bib89) 2018; 11
Hillman (10.1016/j.isci.2020.100967_bib43) 1975
van Zeist (10.1016/j.isci.2020.100967_bib87) 1975; 2
Fu (10.1016/j.isci.2020.100967_bib29) 2002; 49
Hübner (10.1016/j.isci.2020.100967_bib44) 2019; 5
Zohary (10.1016/j.isci.2020.100967_bib109) 2000
Zhao (10.1016/j.isci.2020.100967_bib104) 2011; 16
Zhong (10.1016/j.isci.2020.100967_bib105) 2012; 53
Fu (10.1016/j.isci.2020.100967_bib27) 2012; 2
Zhong (10.1016/j.isci.2020.100967_bib107) 2007; 19
Smykal (10.1016/j.isci.2020.100967_bib72) 2011; 122
Zhu (10.1016/j.isci.2020.100967_bib108) 2018; 11
Gill (10.1016/j.isci.2020.100967_bib32) 1987
Bredeson (10.1016/j.isci.2020.100967_bib11) 2016; 34
Fu (10.1016/j.isci.2020.100967_bib28) 2002; 49
Badouin (10.1016/j.isci.2020.100967_bib5) 2017; 546
Diederichsen (10.1016/j.isci.2020.100967_bib18) 1995; 42
Cloutier (10.1016/j.isci.2020.100967_bib15) 2011; 28
Yang (10.1016/j.isci.2020.100967_bib98) 2017; 8
Duan (10.1016/j.isci.2020.100967_bib19) 2017; 8
Xie (10.1016/j.isci.2020.100967_bib94) 2018; 19
Zhong (10.1016/j.isci.2020.100967_bib106) 2015; 56
Xie (10.1016/j.isci.2020.100967_bib95) 2019; 10
McCarthy (10.1016/j.isci.2020.100967_bib61) 2009; 50
Gill (10.1016/j.isci.2020.100967_bib31) 1966
Xie (10.1016/j.isci.2020.100967_bib96) 2010; 22
Wang (10.1016/j.isci.2020.100967_bib91) 2012; 72
Rajani (10.1016/j.isci.2020.100967_bib69) 2001; 11
Stein (10.1016/j.isci.2020.100967_bib76) 2018; 50
Kumar (10.1016/j.isci.2020.100967_bib53) 2015; 128
Kleman (10.1016/j.isci.2020.100967_bib50) 1999; 402
Zhang (10.1016/j.isci.2020.100967_bib103) 2014; 111
Golicz (10.1016/j.isci.2020.100967_bib34) 2016; 7
Varshney (10.1016/j.isci.2020.100967_bib88) 2017; 49
Tang (10.1016/j.isci.2020.100967_bib80) 2018; 9
Simpson (10.1016/j.isci.2020.100967_bib71) 2010; 22
Cominelli (10.1016/j.isci.2020.100967_bib16) 2009; 19
Qin (10.1016/j.isci.2020.100967_bib68) 2014; 111
Tammes (10.1016/j.isci.2020.100967_bib78) 1928; 4
Li (10.1016/j.isci.2020.100967_bib57) 2014; 32
Gao (10.1016/j.isci.2020.100967_bib30) 2019; 51
Helback (10.1016/j.isci.2020.100967_bib42) 1959; 130
Fu (10.1016/j.isci.2020.100967_bib24) 2011; 58
Bolger (10.1016/j.isci.2020.100967_bib10) 2014; 46
You (10.1016/j.isci.2020.100967_bib100) 2018; 95
Soto-Cerda (10.1016/j.isci.2020.100967_bib74) 2012; 30
Soto-Cerda (10.1016/j.isci.2020.100967_bib73) 2014; 127
References_xml – volume: 51
  start-page: 1044
  year: 2019
  end-page: 1051
  ident: bib30
  article-title: The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor
  publication-title: Nat. Genet.
– volume: 11
  start-page: 46
  year: 2018
  ident: bib108
  article-title: A transgene design for enhancing oil content in Arabidopsis and Camelina seeds
  publication-title: Biotechnol. Biofuels
– volume: 128
  start-page: 965
  year: 2015
  end-page: 984
  ident: bib53
  article-title: QTL for fatty acid composition and yield in linseed (
  publication-title: Theor. Appl. Genet.
– volume: 50
  start-page: 285
  year: 2018
  end-page: 296
  ident: bib76
  article-title: Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus
  publication-title: Nat. Genet.
– volume: 2
  start-page: 139
  year: 2012
  end-page: 152
  ident: bib27
  article-title: Locus-specific view of flax domestication history
  publication-title: Ecol. Evol.
– volume: 4
  start-page: 1
  year: 1928
  end-page: 36
  ident: bib78
  article-title: The genetics of the genus
  publication-title: Bibliogr. Genet.
– volume: 112
  start-page: 58
  year: 2005
  end-page: 65
  ident: bib2
  article-title: Evidence of the domestication history of flax (
  publication-title: Theor. Appl. Genet.
– volume: 34
  start-page: 562
  year: 2016
  end-page: 570
  ident: bib11
  article-title: Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity
  publication-title: Nat. Biotechnol.
– volume: 130
  start-page: 365
  year: 1959
  end-page: 372
  ident: bib42
  article-title: Domestication of Food Plants in the Old World: joint efforts by botanists and archeologists illuminate the obscure history of plant domestication
  publication-title: Science
– volume: 49
  start-page: 167
  year: 2002
  end-page: 174
  ident: bib28
  article-title: Genetic diversity within a range of cultivars and landraces of flax (
  publication-title: Genet. Resour. Crop Evol.
– volume: 5
  start-page: 54
  year: 2019
  end-page: 62
  ident: bib44
  article-title: Sunflower pan-genome analysis shows that hybridization altered gene content and disease resistance
  publication-title: Nat. Plants
– volume: 11
  start-page: 1024
  year: 2018
  end-page: 1037
  ident: bib89
  article-title: Genome of wild Mandarin and domestication history of Mandarin
  publication-title: Mol. Plant
– year: 2000
  ident: bib109
  article-title: Domestication of Plants in the Old World: The Origin and Spread of Cultivated Plants in West Asia, Europe and the Nile Valley
– volume: 7
  start-page: 13390
  year: 2016
  ident: bib34
  article-title: The pangenome of an agronomically important crop plant
  publication-title: Nat. Commun.
– volume: 8
  start-page: 1874
  year: 2017
  ident: bib98
  article-title: Contributions of
  publication-title: Nat. Commun.
– volume: 53
  start-page: 368
  year: 2012
  end-page: 380
  ident: bib105
  article-title: MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes
  publication-title: Plant Cell Physiol.
– volume: 32
  start-page: 1045
  year: 2014
  end-page: 1052
  ident: bib57
  article-title: De novo assembly of soybean wild relatives for pan-genome analysis of diversity and agronomic traits
  publication-title: Nat. Biotechnol.
– volume: 22
  start-page: 3764
  year: 2010
  end-page: 3777
  ident: bib71
  article-title: Noncanonical Translation Initiation of the
  publication-title: Plant Cell
– volume: 2
  start-page: 215
  year: 1975
  end-page: 219
  ident: bib87
  article-title: Evidence for linseed cultivation before 6000 BC
  publication-title: J. Archaeol. Sci.
– volume: 95
  start-page: 371
  year: 2018
  end-page: 384
  ident: bib100
  article-title: Chromosome-scale pseudomolecules refined by optical, physical and genetic maps in flax
  publication-title: Plant J.
– volume: 58
  start-page: 1119
  year: 2011
  end-page: 1128
  ident: bib24
  article-title: Genetic evidence for early flax domestication with capsular dehiscence
  publication-title: Genet. Resour. Crop Evol.
– volume: 127
  start-page: 881
  year: 2014
  end-page: 896
  ident: bib73
  article-title: Association mapping of seed quality traits using the Canadian flax (
  publication-title: Theor. Appl. Genet.
– volume: 49
  start-page: 303
  year: 2017
  end-page: 309
  ident: bib84
  article-title: Robust and scalable inference of population history from hundreds of unphased whole genomes
  publication-title: Nat. Genet.
– start-page: 70
  year: 1975
  end-page: 73
  ident: bib43
  article-title: The plant remains from Tell Abu Hureyra: a preliminary report
  publication-title: Proceedings of the Prehistoric Society
– volume: 111
  start-page: E4954
  year: 2014
  end-page: E4962
  ident: bib103
  article-title: Rapid diversification of five Oryza AA genomes associated with rice adaptation
  publication-title: Proc. Natl. Acad. Sci. U S A
– volume: 122
  start-page: 1385
  year: 2011
  end-page: 1397
  ident: bib72
  article-title: Genetic diversity of cultivated flax (
  publication-title: Theor. Appl. Genet.
– volume: 111
  start-page: 5135
  year: 2014
  end-page: 5140
  ident: bib68
  article-title: Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization
  publication-title: Proc. Natl. Acad. Sci. U S A
– year: 1987
  ident: bib32
  article-title: Linseed
– volume: 56
  start-page: 195
  year: 2015
  end-page: 214
  ident: bib106
  article-title: Secondary cell walls: biosynthesis, patterned deposition and transcriptional regulation
  publication-title: Plant Cell Physiol.
– volume: 50
  start-page: 1950
  year: 2009
  end-page: 1964
  ident: bib61
  article-title: MYB83 is a direct target of SND1 and acts redundantly with MYB46 in the regulation of secondary cell wall biosynthesis in Arabidopsis
  publication-title: Plant Cell Physiol.
– volume: 18
  start-page: 33
  year: 2017
  ident: bib23
  article-title: Genomic insights into divergence and dual domestication of cultivated allotetraploid cottons
  publication-title: Genome Biol.
– volume: 28
  start-page: 437
  year: 2011
  end-page: 451
  ident: bib15
  article-title: SSR-based linkage map of flax (
  publication-title: Mol. Breed.
– volume: 49
  start-page: 253
  year: 2002
  end-page: 259
  ident: bib29
  article-title: RAPD analysis of genetic relationships of seven flax species in the genus
  publication-title: Genet. Resour. Crop Evol.
– volume: 72
  start-page: 461
  year: 2012
  end-page: 473
  ident: bib91
  article-title: The genome of flax (
  publication-title: Plant J.
– volume: 42
  start-page: 263
  year: 1995
  end-page: 272
  ident: bib18
  article-title: Variation of cultivated flax (
  publication-title: Genet. Resour. Crop Evol.
– year: 1966
  ident: bib31
  article-title: Evolutionary Relationships Among Linum Species
– volume: 19
  start-page: 512
  year: 2018
  ident: bib94
  article-title: Genomic variations and association study of agronomic traits in flax
  publication-title: BMC Genomics
– volume: 19
  start-page: 2776
  year: 2007
  end-page: 2792
  ident: bib107
  article-title: The MYB46 transcription factor is a direct target of SND1 and regulates secondary wall biosynthesis in
  publication-title: Plant Cell
– volume: 30
  start-page: 875
  year: 2012
  end-page: 888
  ident: bib74
  article-title: SSR-based population structure, molecular diversity and linkage disequilibrium analysis of a collection of flax (
  publication-title: Mol. Breed.
– volume: 46
  start-page: 1034
  year: 2014
  end-page: 1038
  ident: bib10
  article-title: The genome of the stress-tolerant wild tomato species
  publication-title: Nat. Genet.
– volume: 16
  start-page: 227
  year: 2011
  end-page: 233
  ident: bib104
  article-title: Transcriptional networks for lignin biosynthesis: more complex than we thought
  publication-title: Trends Plant Sci.
– volume: 49
  start-page: 1082
  year: 2017
  end-page: 1088
  ident: bib88
  article-title: Whole-genome resequencing of 292 pigeon pea accessions identifies genomic regions associated with domestication and agronomic traits
  publication-title: Nat. Genet.
– volume: 12
  start-page: 492
  year: 2012
  end-page: 500
  ident: bib26
  article-title: Developing genomic resources in two
  publication-title: Mol. Ecol. Resour.
– volume: 9
  start-page: 260
  year: 2018
  ident: bib80
  article-title: Seed-specific expression of
  publication-title: Front. Plant Sci.
– volume: 8
  start-page: 249
  year: 2017
  ident: bib19
  article-title: Genome re-sequencing reveals the history of apple and supports a two-stage model for fruit enlargement
  publication-title: Nat. Commun.
– volume: 11
  start-page: 1914
  year: 2001
  end-page: 1922
  ident: bib69
  article-title: The
  publication-title: Curr. Biol.
– volume: 402
  start-page: 63
  year: 1999
  ident: bib50
  article-title: Frozen-bed fennoscandian and laurentide ice sheets during the Last glacial maximum
  publication-title: Nature
– volume: 546
  start-page: 148
  year: 2017
  end-page: 152
  ident: bib5
  article-title: The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution
  publication-title: Nature
– volume: 10
  start-page: 1216
  year: 2019
  ident: bib95
  article-title: A reference-grade wild soybean genome
  publication-title: Nat. Commun.
– volume: 22
  start-page: 2306
  year: 2010
  end-page: 2321
  ident: bib96
  article-title: Regulation of cell proliferation in the stomatal lineage by the Arabidopsis MYB FOUR LIPS via direct targeting of core cell cycle genes
  publication-title: Plant Cell
– volume: 2
  start-page: 622
  year: 2012
  end-page: 635
  ident: bib25
  article-title: Population-based resequencing revealed an ancestral winter group of cultivated flax: implication for flax domestication processes
  publication-title: Ecol. Evol.
– volume: 19
  start-page: 1231
  year: 2009
  end-page: 1232
  ident: bib16
  article-title: A new role for plant R2R3-MYB transcription factors in cell cycle regulation
  publication-title: Cell Res.
– volume: 19
  start-page: 1231
  year: 2009
  ident: 10.1016/j.isci.2020.100967_bib16
  article-title: A new role for plant R2R3-MYB transcription factors in cell cycle regulation
  publication-title: Cell Res.
  doi: 10.1038/cr.2009.123
– volume: 53
  start-page: 368
  year: 2012
  ident: 10.1016/j.isci.2020.100967_bib105
  article-title: MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes
  publication-title: Plant Cell Physiol.
  doi: 10.1093/pcp/pcr185
– year: 1966
  ident: 10.1016/j.isci.2020.100967_bib31
– volume: 11
  start-page: 1914
  year: 2001
  ident: 10.1016/j.isci.2020.100967_bib69
  article-title: The Arabidopsis myc/bHLH gene ALCATRAZ enables cell separation in fruit dehiscence
  publication-title: Curr. Biol.
  doi: 10.1016/S0960-9822(01)00593-0
– volume: 49
  start-page: 303
  year: 2017
  ident: 10.1016/j.isci.2020.100967_bib84
  article-title: Robust and scalable inference of population history from hundreds of unphased whole genomes
  publication-title: Nat. Genet.
  doi: 10.1038/ng.3748
– volume: 22
  start-page: 2306
  year: 2010
  ident: 10.1016/j.isci.2020.100967_bib96
  article-title: Regulation of cell proliferation in the stomatal lineage by the Arabidopsis MYB FOUR LIPS via direct targeting of core cell cycle genes
  publication-title: Plant Cell
  doi: 10.1105/tpc.110.074609
– volume: 42
  start-page: 263
  year: 1995
  ident: 10.1016/j.isci.2020.100967_bib18
  article-title: Variation of cultivated flax (Linum usitatissimum L. subsp.usitatissimum) and its wild progenitor pale flax (subsp.angustifolium (Huds.) Thell.)
  publication-title: Genet. Resour. Crop Evol.
  doi: 10.1007/BF02431261
– volume: 111
  start-page: E4954
  year: 2014
  ident: 10.1016/j.isci.2020.100967_bib103
  article-title: Rapid diversification of five Oryza AA genomes associated with rice adaptation
  publication-title: Proc. Natl. Acad. Sci. U S A
  doi: 10.1073/pnas.1418307111
– volume: 9
  start-page: 260
  year: 2018
  ident: 10.1016/j.isci.2020.100967_bib80
  article-title: Seed-specific expression of AtLEC1 increased oil content and altered fatty acid composition in seeds of peanut (Arachis hypogaea L.)
  publication-title: Front. Plant Sci.
  doi: 10.3389/fpls.2018.00260
– volume: 112
  start-page: 58
  year: 2005
  ident: 10.1016/j.isci.2020.100967_bib2
  article-title: Evidence of the domestication history of flax (Linum usitatissimum L.) from genetic diversity of the sad2 locus
  publication-title: Theor. Appl. Genet.
  doi: 10.1007/s00122-005-0103-3
– volume: 111
  start-page: 5135
  year: 2014
  ident: 10.1016/j.isci.2020.100967_bib68
  article-title: Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization
  publication-title: Proc. Natl. Acad. Sci. U S A
  doi: 10.1073/pnas.1400975111
– volume: 50
  start-page: 1950
  year: 2009
  ident: 10.1016/j.isci.2020.100967_bib61
  article-title: MYB83 is a direct target of SND1 and acts redundantly with MYB46 in the regulation of secondary cell wall biosynthesis in Arabidopsis
  publication-title: Plant Cell Physiol.
  doi: 10.1093/pcp/pcp139
– volume: 22
  start-page: 3764
  year: 2010
  ident: 10.1016/j.isci.2020.100967_bib71
  article-title: Noncanonical Translation Initiation of the Arabidopsis flowering time and alternative polyadenylation regulator FCA
  publication-title: Plant Cell
  doi: 10.1105/tpc.110.077990
– volume: 8
  start-page: 249
  year: 2017
  ident: 10.1016/j.isci.2020.100967_bib19
  article-title: Genome re-sequencing reveals the history of apple and supports a two-stage model for fruit enlargement
  publication-title: Nat. Commun.
  doi: 10.1038/s41467-017-00336-7
– volume: 2
  start-page: 622
  year: 2012
  ident: 10.1016/j.isci.2020.100967_bib25
  article-title: Population-based resequencing revealed an ancestral winter group of cultivated flax: implication for flax domestication processes
  publication-title: Ecol. Evol.
  doi: 10.1002/ece3.101
– volume: 49
  start-page: 1082
  year: 2017
  ident: 10.1016/j.isci.2020.100967_bib88
  article-title: Whole-genome resequencing of 292 pigeon pea accessions identifies genomic regions associated with domestication and agronomic traits
  publication-title: Nat. Genet.
  doi: 10.1038/ng.3872
– volume: 5
  start-page: 54
  year: 2019
  ident: 10.1016/j.isci.2020.100967_bib44
  article-title: Sunflower pan-genome analysis shows that hybridization altered gene content and disease resistance
  publication-title: Nat. Plants
  doi: 10.1038/s41477-018-0329-0
– volume: 58
  start-page: 1119
  year: 2011
  ident: 10.1016/j.isci.2020.100967_bib24
  article-title: Genetic evidence for early flax domestication with capsular dehiscence
  publication-title: Genet. Resour. Crop Evol.
  doi: 10.1007/s10722-010-9650-9
– volume: 128
  start-page: 965
  year: 2015
  ident: 10.1016/j.isci.2020.100967_bib53
  article-title: QTL for fatty acid composition and yield in linseed (Linum usitatissimum L.)
  publication-title: Theor. Appl. Genet.
  doi: 10.1007/s00122-015-2483-3
– volume: 49
  start-page: 167
  year: 2002
  ident: 10.1016/j.isci.2020.100967_bib28
  article-title: Genetic diversity within a range of cultivars and landraces of flax (Linum usitatissimum L.) as revealed by RAPDs
  publication-title: Genet. Resour. Crop Evol.
  doi: 10.1023/A:1014716031095
– volume: 4
  start-page: 1
  year: 1928
  ident: 10.1016/j.isci.2020.100967_bib78
  article-title: The genetics of the genus Linum
  publication-title: Bibliogr. Genet.
– start-page: 70
  year: 1975
  ident: 10.1016/j.isci.2020.100967_bib43
  article-title: The plant remains from Tell Abu Hureyra: a preliminary report
– volume: 10
  start-page: 1216
  year: 2019
  ident: 10.1016/j.isci.2020.100967_bib95
  article-title: A reference-grade wild soybean genome
  publication-title: Nat. Commun.
  doi: 10.1038/s41467-019-09142-9
– volume: 34
  start-page: 562
  year: 2016
  ident: 10.1016/j.isci.2020.100967_bib11
  article-title: Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity
  publication-title: Nat. Biotechnol.
  doi: 10.1038/nbt.3535
– volume: 50
  start-page: 285
  year: 2018
  ident: 10.1016/j.isci.2020.100967_bib76
  article-title: Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza
  publication-title: Nat. Genet.
  doi: 10.1038/s41588-018-0040-0
– volume: 16
  start-page: 227
  year: 2011
  ident: 10.1016/j.isci.2020.100967_bib104
  article-title: Transcriptional networks for lignin biosynthesis: more complex than we thought
  publication-title: Trends Plant Sci.
  doi: 10.1016/j.tplants.2010.12.005
– volume: 30
  start-page: 875
  year: 2012
  ident: 10.1016/j.isci.2020.100967_bib74
  article-title: SSR-based population structure, molecular diversity and linkage disequilibrium analysis of a collection of flax (Linum usitatissimum L.) varying for mucilage seed-coat content
  publication-title: Mol. Breed.
  doi: 10.1007/s11032-011-9670-y
– volume: 32
  start-page: 1045
  year: 2014
  ident: 10.1016/j.isci.2020.100967_bib57
  article-title: De novo assembly of soybean wild relatives for pan-genome analysis of diversity and agronomic traits
  publication-title: Nat. Biotechnol.
  doi: 10.1038/nbt.2979
– year: 2000
  ident: 10.1016/j.isci.2020.100967_bib109
– volume: 19
  start-page: 512
  year: 2018
  ident: 10.1016/j.isci.2020.100967_bib94
  article-title: Genomic variations and association study of agronomic traits in flax
  publication-title: BMC Genomics
  doi: 10.1186/s12864-018-4899-z
– year: 1987
  ident: 10.1016/j.isci.2020.100967_bib32
– volume: 402
  start-page: 63
  year: 1999
  ident: 10.1016/j.isci.2020.100967_bib50
  article-title: Frozen-bed fennoscandian and laurentide ice sheets during the Last glacial maximum
  publication-title: Nature
  doi: 10.1038/47005
– volume: 546
  start-page: 148
  year: 2017
  ident: 10.1016/j.isci.2020.100967_bib5
  article-title: The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution
  publication-title: Nature
  doi: 10.1038/nature22380
– volume: 11
  start-page: 1024
  year: 2018
  ident: 10.1016/j.isci.2020.100967_bib89
  article-title: Genome of wild Mandarin and domestication history of Mandarin
  publication-title: Mol. Plant
  doi: 10.1016/j.molp.2018.06.001
– volume: 130
  start-page: 365
  year: 1959
  ident: 10.1016/j.isci.2020.100967_bib42
  article-title: Domestication of Food Plants in the Old World: joint efforts by botanists and archeologists illuminate the obscure history of plant domestication
  publication-title: Science
  doi: 10.1126/science.130.3372.365
– volume: 7
  start-page: 13390
  year: 2016
  ident: 10.1016/j.isci.2020.100967_bib34
  article-title: The pangenome of an agronomically important crop plant Brassica oleracea
  publication-title: Nat. Commun.
  doi: 10.1038/ncomms13390
– volume: 8
  start-page: 1874
  year: 2017
  ident: 10.1016/j.isci.2020.100967_bib98
  article-title: Contributions of Zea mays subspecies mexicana haplotypes to modern maize
  publication-title: Nat. Commun.
  doi: 10.1038/s41467-017-02063-5
– volume: 72
  start-page: 461
  year: 2012
  ident: 10.1016/j.isci.2020.100967_bib91
  article-title: The genome of flax (Linum usitatissimum) assembled de novo from short shotgun sequence reads
  publication-title: Plant J.
  doi: 10.1111/j.1365-313X.2012.05093.x
– volume: 49
  start-page: 253
  year: 2002
  ident: 10.1016/j.isci.2020.100967_bib29
  article-title: RAPD analysis of genetic relationships of seven flax species in the genus Linum L
  publication-title: Genet. Resour. Crop Evol.
  doi: 10.1023/A:1015571700673
– volume: 11
  start-page: 46
  year: 2018
  ident: 10.1016/j.isci.2020.100967_bib108
  article-title: A transgene design for enhancing oil content in Arabidopsis and Camelina seeds
  publication-title: Biotechnol. Biofuels
  doi: 10.1186/s13068-018-1049-4
– volume: 2
  start-page: 139
  year: 2012
  ident: 10.1016/j.isci.2020.100967_bib27
  article-title: Locus-specific view of flax domestication history
  publication-title: Ecol. Evol.
  doi: 10.1002/ece3.57
– volume: 12
  start-page: 492
  year: 2012
  ident: 10.1016/j.isci.2020.100967_bib26
  article-title: Developing genomic resources in two Linum species via 454 pyrosequencing and genomic reduction
  publication-title: Mol. Ecol. Resour.
  doi: 10.1111/j.1755-0998.2011.03100.x
– volume: 56
  start-page: 195
  year: 2015
  ident: 10.1016/j.isci.2020.100967_bib106
  article-title: Secondary cell walls: biosynthesis, patterned deposition and transcriptional regulation
  publication-title: Plant Cell Physiol.
  doi: 10.1093/pcp/pcu140
– volume: 28
  start-page: 437
  year: 2011
  ident: 10.1016/j.isci.2020.100967_bib15
  article-title: SSR-based linkage map of flax (Linum usitatissimum L.) and mapping of QTLs underlying fatty acid composition traits
  publication-title: Mol. Breed.
  doi: 10.1007/s11032-010-9494-1
– volume: 122
  start-page: 1385
  year: 2011
  ident: 10.1016/j.isci.2020.100967_bib72
  article-title: Genetic diversity of cultivated flax (Linum usitatissimum L.) germplasm assessed by retrotransposon-based markers
  publication-title: Theor. Appl. Genet.
  doi: 10.1007/s00122-011-1539-2
– volume: 127
  start-page: 881
  year: 2014
  ident: 10.1016/j.isci.2020.100967_bib73
  article-title: Association mapping of seed quality traits using the Canadian flax (Linum usitatissimum L.) core collection
  publication-title: Theor. Appl. Genet.
  doi: 10.1007/s00122-014-2264-4
– volume: 18
  start-page: 33
  year: 2017
  ident: 10.1016/j.isci.2020.100967_bib23
  article-title: Genomic insights into divergence and dual domestication of cultivated allotetraploid cottons
  publication-title: Genome Biol.
  doi: 10.1186/s13059-017-1167-5
– volume: 95
  start-page: 371
  year: 2018
  ident: 10.1016/j.isci.2020.100967_bib100
  article-title: Chromosome-scale pseudomolecules refined by optical, physical and genetic maps in flax
  publication-title: Plant J.
  doi: 10.1111/tpj.13944
– volume: 51
  start-page: 1044
  year: 2019
  ident: 10.1016/j.isci.2020.100967_bib30
  article-title: The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor
  publication-title: Nat. Genet.
  doi: 10.1038/s41588-019-0410-2
– volume: 46
  start-page: 1034
  year: 2014
  ident: 10.1016/j.isci.2020.100967_bib10
  article-title: The genome of the stress-tolerant wild tomato species Solanum pennellii
  publication-title: Nat. Genet.
  doi: 10.1038/ng.3046
– volume: 2
  start-page: 215
  year: 1975
  ident: 10.1016/j.isci.2020.100967_bib87
  article-title: Evidence for linseed cultivation before 6000 BC
  publication-title: J. Archaeol. Sci.
  doi: 10.1016/0305-4403(75)90059-X
– volume: 19
  start-page: 2776
  year: 2007
  ident: 10.1016/j.isci.2020.100967_bib107
  article-title: The MYB46 transcription factor is a direct target of SND1 and regulates secondary wall biosynthesis in Arabidopsis
  publication-title: Plant Cell
  doi: 10.1105/tpc.107.053678
SSID ssj0002002496
Score 2.3341072
Snippet Flax has been cultivated for its oil and fiber for thousands of years. However, it remains unclear how the modifications of agronomic traits occurred on the...
SourceID doaj
pubmedcentral
proquest
pubmed
crossref
elsevier
SourceType Open Website
Open Access Repository
Aggregation Database
Index Database
Enrichment Source
Publisher
StartPage 100967
SubjectTerms Biological Sciences
Evolutionary Biology
Genomics
Plant Evolution
Plant Genetics
Title Genomic Comparison and Population Diversity Analysis Provide Insights into the Domestication and Improvement of Flax
URI https://dx.doi.org/10.1016/j.isci.2020.100967
https://www.ncbi.nlm.nih.gov/pubmed/32240956
https://www.proquest.com/docview/2386276326
https://pubmed.ncbi.nlm.nih.gov/PMC7114909
https://doaj.org/article/9c0f44cfc29041dc9c83c5cb421b460e
Volume 23
hasFullText 1
inHoldings 1
isFullTextHit
isPrint
link http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwrV1NT9wwELUqTlwqKmgJBWSk3qqoie048ZGvhVZqxaErcbNsxxGLaILYReLnM2MnYRek5VLtbZPNxplx5o098x4h36SsamNtk2amZJCgwExX0ptUWlRDspzz0OX6-4-8nIpf18X1ktQX1oRFeuD44H4olzVCuMYxlYm8dspV3BXOCpZbITOPb1-IeUvJ1G3YXkMqvKAsV2BNELhm3zETi7uw4xWSQxaqBFQQmX-JSoG8fyU4vQWfr2sol4LSZIt87NEkPY6j-EQ--HabLC586DWmp6PGIDVtTa9GrS56NlRj0IGUhF7Fljz6s51jvj6ns3bRUYCH9Kz7h1QccW0vXCmuRISFRdo1dHJnnnbIdHL-9_Qy7cUVUocaBmkt4MMagEsmM76RhasshH4DsapyPHdVJZyvDGu4gxhWuLqBxKYsSi8NMkwK_plstF3rdwk1cMA45TML6SLzTOVgKGmkr63iqlYJyYeHq13PPI4CGHd6KDG71WgQjQbR0SAJ-T7-5j7ybqw9-wRtNp6JnNnhC_Ak3XuSfs-TElIMFtc9_IiwAi41W_vnR4N7aJibuOFiWt89zjXAIcngBc5kQr5EdxlvkSOWguQ0IeWKI62MYfVIO7sJ_N8l5LAqU3v_Y9BfySYOBffHmNgnG4uHR38AMGthD8OMega9iSWL
linkProvider Directory of Open Access Journals
openUrl ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Genomic+Comparison+and+Population+Diversity+Analysis+Provide+Insights+into+the+Domestication+and+Improvement+of+Flax&rft.jtitle=iScience&rft.au=Zhang%2C+Jianping&rft.au=Qi%2C+Yanni&rft.au=Wang%2C+Limin&rft.au=Wang%2C+Lili&rft.date=2020-04-24&rft.pub=Elsevier&rft.eissn=2589-0042&rft.volume=23&rft.issue=4&rft_id=info:doi/10.1016%2Fj.isci.2020.100967&rft_id=info%3Apmid%2F32240956&rft.externalDocID=PMC7114909
thumbnail_l http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=2589-0042&client=summon
thumbnail_m http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=2589-0042&client=summon
thumbnail_s http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=2589-0042&client=summon