Microbial Biogeography of Six Salt Lakes in Inner Mongolia, China, and a Salt Lake in Argentina

We used cultivation-independent methods to investigate the prokaryotic biogeography of the water column in six salt lakes in Inner Mongolia, China, and a salt lake in Argentina. These lakes had different salt compositions and pH values and were at variable geographic distances, on both local and int...

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Published inApplied and Environmental Microbiology Vol. 75; no. 18; pp. 5750 - 5760
Main Authors Pagaling, Eulyn, Wang, Huanzhi, Venables, Madeleine, Wallace, Andrew, Grant, William D, Cowan, Don A, Jones, Brian E, Ma, Yanhe, Ventosa, Antonio, Heaphy, Shaun
Format Journal Article
LanguageEnglish
Published Washington, DC American Society for Microbiology 01.09.2009
American Society for Microbiology (ASM)
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Abstract We used cultivation-independent methods to investigate the prokaryotic biogeography of the water column in six salt lakes in Inner Mongolia, China, and a salt lake in Argentina. These lakes had different salt compositions and pH values and were at variable geographic distances, on both local and intercontinental scales, which allowed us to explore the microbial community composition within the context of both contemporary environmental conditions and geographic distance. Fourteen 16S rRNA gene clone libraries were constructed, and over 200 16S rRNA gene sequences were obtained. These sequences were used to construct biotic similarity matrices, which were used in combination with environmental similarity matrices and a distance matrix in the Mantel test to discover which factors significantly influenced biotic similarity. We showed that archaeal biogeography was influenced by contemporary environmental factors alone (Na⁺, CO₃²⁻, and HCO₃⁻ ion concentrations; pH; and temperature). Bacterial biogeography was influenced both by contemporary environmental factors (Na⁺, Mg²⁺, and HCO₃⁻ ion concentrations and pH) and by geographic distance.
AbstractList ABSTRACT We used cultivation-independent methods to investigate the prokaryotic biogeography of the water column in six salt lakes in Inner Mongolia, China, and a salt lake in Argentina. These lakes had different salt compositions and pH values and were at variable geographic distances, on both local and intercontinental scales, which allowed us to explore the microbial community composition within the context of both contemporary environmental conditions and geographic distance. Fourteen 16S rRNA gene clone libraries were constructed, and over 200 16S rRNA gene sequences were obtained. These sequences were used to construct biotic similarity matrices, which were used in combination with environmental similarity matrices and a distance matrix in the Mantel test to discover which factors significantly influenced biotic similarity. We showed that archaeal biogeography was influenced by contemporary environmental factors alone (Na + , CO 3 2− , and HCO 3 − ion concentrations; pH; and temperature). Bacterial biogeography was influenced both by contemporary environmental factors (Na + , Mg 2+ , and HCO 3 − ion concentrations and pH) and by geographic distance.
We used cultivation-independent methods to investigate the prokaryotic biogeography of the water column in six salt lakes in Inner Mongolia, China, and a salt lake in Argentina. These lakes had different salt compositions and pH values and were at variable geographic distances, on both local and intercontinental scales, which allowed us to explore the microbial community composition within the context of both contemporary environmental conditions and geographic distance. Fourteen 16S rRNA gene clone libraries were constructed, and over 200 16S rRNA gene sequences were obtained. These sequences were used to construct biotic similarity matrices, which were used in combination with environmental similarity matrices and a distance matrix in the Mantel test to discover which factors significantly influenced biotic similarity. We showed that archaeal biogeography was influenced by contemporary environmental factors alone (Na⁺, CO₃²⁻, and HCO₃⁻ ion concentrations; pH; and temperature). Bacterial biogeography was influenced both by contemporary environmental factors (Na⁺, Mg²⁺, and HCO₃⁻ ion concentrations and pH) and by geographic distance.
We used cultivation-independent methods to investigate the prokaryotic biogeography of the water column in six salt lakes in Inner Mongolia, China, and a salt lake in Argentina. These lakes had different salt compositions and pH values and were at variable geographic distances, on both local and intercontinental scales, which allowed us to explore the microbial community composition within the context of both contemporary environmental conditions and geographic distance. Fourteen 16S rRNA gene clone libraries were constructed, and over 200 16S rRNA gene sequences were obtained. These sequences were used to construct biotic similarity matrices, which were used in combination with environmental similarity matrices and a distance matrix in the Mantel test to discover which factors significantly influenced biotic similarity. We showed that archaeal biogeography was influenced by contemporary environmental factors alone (Na+, CO3(2-), and HCO3(-) ion concentrations; pH; and temperature). Bacterial biogeography was influenced both by contemporary environmental factors (Na+, Mg2+, and HCO3(-) ion concentrations and pH) and by geographic distance.
We used cultivation-independent methods to investigate the prokaryotic biogeography of the water column in six salt lakes in Inner Mongolia, China, and a salt lake in Argentina. These lakes had different salt compositions and pH values and were at variable geographic distances, on both local and intercontinental scales, which allowed us to explore the microbial community composition within the context of both contemporary environmental conditions and geographic distance. Fourteen 16S rRNA gene clone libraries were constructed, and over 200 16S rRNA gene sequences were obtained. These sequences were used to construct biotic similarity matrices, which were used in combination with environmental similarity matrices and a distance matrix in the Mantel test to discover which factors significantly influenced biotic similarity. We showed that archaeal biogeography was influenced by contemporary environmental factors alone (Na + , CO 3 2− , and HCO 3 − ion concentrations; pH; and temperature). Bacterial biogeography was influenced both by contemporary environmental factors (Na + , Mg 2+ , and HCO 3 − ion concentrations and pH) and by geographic distance.
We used cultivation-independent methods to investigate the prokaryotic biogeography of the water column in six salt lakes in Inner Mongolia, China, and a salt lake in Argentina. These lakes had different salt compositions and pH values and were at variable geographic distances, on both local and intercontinental scales, which allowed us to explore the microbial community composition within the context of both contemporary environmental conditions and geographic distance. Fourteen 16S rRNA gene clone libraries were constructed, and over 200 16S rRNA gene sequences were obtained. These sequences were used to construct biotic similarity matrices, which were used in combination with environmental similarity matrices and a distance matrix in the Mantel test to discover which factors significantly influenced biotic similarity. We showed that archaeal biogeography was influenced by contemporary environmental factors alone (..., ..., and ... ion concentrations; pH; and temperature). Bacterial biogeography was influenced both by contemporary environmental factors (..., ..., and ... ion concentrations and pH) and by geographic distance. (ProQuest: ... denotes formulae/symbols omitted.)
We used cultivation-independent methods to investigate the prokaryotic biogeography of the water column in six salt lakes in Inner Mongolia, China, and a salt lake in Argentina. These lakes had different salt compositions and pH values and were at variable geographic distances, on both local and intercontinental scales, which allowed us to explore the microbial community composition within the context of both contemporary environmental conditions and geographic distance. Fourteen 16S rRNA gene clone libraries were constructed, and over 200 16S rRNA gene sequences were obtained. These sequences were used to construct biotic similarity matrices, which were used in combination with environmental similarity matrices and a distance matrix in the Mantel test to discover which factors significantly influenced biotic similarity. We showed that archaeal biogeography was influenced by contemporary environmental factors alone (Na+, CO32-, and HCO3- ion concentrations; pH; and temperature). Bacterial biogeography was influenced both by contemporary environmental factors (Na+, Mg2+, and HCO3- ion concentrations and pH) and by geographic distance.
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Author Heaphy, Shaun
Pagaling, Eulyn
Cowan, Don A
Ma, Yanhe
Wang, Huanzhi
Jones, Brian E
Grant, William D
Ventosa, Antonio
Venables, Madeleine
Wallace, Andrew
AuthorAffiliation Department of Infection, Immunity and Inflammation, University of Leicester, University Road, Leicester LE1 9HN, United Kingdom, 1 Department of Biotechnology, University of the Western Cape, Bellville 7535, Cape Town, South Africa, 2 Genencor International B.V., Archimedesweg 30, 2333 CN Leiden, The Netherlands, 3 State Key Laboratory of Microbial Resource, Institute of Microbiology, Chinese Academy of Sciences, 100080 Beijing, China, 4 Department of Microbiology and Parasitology, Faculty of Pharmacy, University of Seville, 41012 Seville, Spain 5
AuthorAffiliation_xml – name: Department of Infection, Immunity and Inflammation, University of Leicester, University Road, Leicester LE1 9HN, United Kingdom, 1 Department of Biotechnology, University of the Western Cape, Bellville 7535, Cape Town, South Africa, 2 Genencor International B.V., Archimedesweg 30, 2333 CN Leiden, The Netherlands, 3 State Key Laboratory of Microbial Resource, Institute of Microbiology, Chinese Academy of Sciences, 100080 Beijing, China, 4 Department of Microbiology and Parasitology, Faculty of Pharmacy, University of Seville, 41012 Seville, Spain 5
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Corresponding author. Mailing address: Department of Infection, Immunity, and Inflammation, University of Leicester, University Road, Leicester LE1 9HN, United Kingdom. Phone: 44 116 252 2973. Fax: 44 116 252 5030. E-mail: sh1@le.ac.uk
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Snippet We used cultivation-independent methods to investigate the prokaryotic biogeography of the water column in six salt lakes in Inner Mongolia, China, and a salt...
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ABSTRACT We used cultivation-independent methods to investigate the prokaryotic biogeography of the water column in six salt lakes in Inner Mongolia, China,...
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StartPage 5750
SubjectTerms Archaea - classification
Archaea - genetics
Archaea - isolation & purification
Argentina
Bacteria - classification
Bacteria - genetics
Bacteria - isolation & purification
Biodiversity
Biogeography
Biological and medical sciences
China
Cluster Analysis
DNA, Archaeal - chemistry
DNA, Archaeal - genetics
DNA, Bacterial - chemistry
DNA, Bacterial - genetics
DNA, Ribosomal - chemistry
DNA, Ribosomal - genetics
Fundamental and applied biological sciences. Psychology
Genes
Genes, rRNA
Hydrogen-Ion Concentration
International comparisons
Lakes
Microbial Ecology
Microbiology
Molecular Sequence Data
Organisms
Phylogeny
Ribonucleic acid
RNA
RNA, Archaeal - genetics
RNA, Bacterial - genetics
RNA, Ribosomal, 16S - genetics
Salts - analysis
Sequence Analysis, DNA
Sequence Homology, Nucleic Acid
Water - analysis
Water Microbiology
Title Microbial Biogeography of Six Salt Lakes in Inner Mongolia, China, and a Salt Lake in Argentina
URI http://aem.asm.org/content/75/18/5750.abstract
https://www.ncbi.nlm.nih.gov/pubmed/19648369
https://www.proquest.com/docview/205962157
https://search.proquest.com/docview/21490874
https://search.proquest.com/docview/67646335
https://pubmed.ncbi.nlm.nih.gov/PMC2747855
Volume 75
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