Microbial Biogeography of Six Salt Lakes in Inner Mongolia, China, and a Salt Lake in Argentina
We used cultivation-independent methods to investigate the prokaryotic biogeography of the water column in six salt lakes in Inner Mongolia, China, and a salt lake in Argentina. These lakes had different salt compositions and pH values and were at variable geographic distances, on both local and int...
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Published in | Applied and Environmental Microbiology Vol. 75; no. 18; pp. 5750 - 5760 |
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Main Authors | , , , , , , , , , |
Format | Journal Article |
Language | English |
Published |
Washington, DC
American Society for Microbiology
01.09.2009
American Society for Microbiology (ASM) |
Subjects | |
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Abstract | We used cultivation-independent methods to investigate the prokaryotic biogeography of the water column in six salt lakes in Inner Mongolia, China, and a salt lake in Argentina. These lakes had different salt compositions and pH values and were at variable geographic distances, on both local and intercontinental scales, which allowed us to explore the microbial community composition within the context of both contemporary environmental conditions and geographic distance. Fourteen 16S rRNA gene clone libraries were constructed, and over 200 16S rRNA gene sequences were obtained. These sequences were used to construct biotic similarity matrices, which were used in combination with environmental similarity matrices and a distance matrix in the Mantel test to discover which factors significantly influenced biotic similarity. We showed that archaeal biogeography was influenced by contemporary environmental factors alone (Na⁺, CO₃²⁻, and HCO₃⁻ ion concentrations; pH; and temperature). Bacterial biogeography was influenced both by contemporary environmental factors (Na⁺, Mg²⁺, and HCO₃⁻ ion concentrations and pH) and by geographic distance. |
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AbstractList | ABSTRACT
We used cultivation-independent methods to investigate the prokaryotic biogeography of the water column in six salt lakes in Inner Mongolia, China, and a salt lake in Argentina. These lakes had different salt compositions and pH values and were at variable geographic distances, on both local and intercontinental scales, which allowed us to explore the microbial community composition within the context of both contemporary environmental conditions and geographic distance. Fourteen 16S rRNA gene clone libraries were constructed, and over 200 16S rRNA gene sequences were obtained. These sequences were used to construct biotic similarity matrices, which were used in combination with environmental similarity matrices and a distance matrix in the Mantel test to discover which factors significantly influenced biotic similarity. We showed that archaeal biogeography was influenced by contemporary environmental factors alone (Na
+
, CO
3
2−
, and HCO
3
−
ion concentrations; pH; and temperature). Bacterial biogeography was influenced both by contemporary environmental factors (Na
+
, Mg
2+
, and HCO
3
−
ion concentrations and pH) and by geographic distance. We used cultivation-independent methods to investigate the prokaryotic biogeography of the water column in six salt lakes in Inner Mongolia, China, and a salt lake in Argentina. These lakes had different salt compositions and pH values and were at variable geographic distances, on both local and intercontinental scales, which allowed us to explore the microbial community composition within the context of both contemporary environmental conditions and geographic distance. Fourteen 16S rRNA gene clone libraries were constructed, and over 200 16S rRNA gene sequences were obtained. These sequences were used to construct biotic similarity matrices, which were used in combination with environmental similarity matrices and a distance matrix in the Mantel test to discover which factors significantly influenced biotic similarity. We showed that archaeal biogeography was influenced by contemporary environmental factors alone (Na⁺, CO₃²⁻, and HCO₃⁻ ion concentrations; pH; and temperature). Bacterial biogeography was influenced both by contemporary environmental factors (Na⁺, Mg²⁺, and HCO₃⁻ ion concentrations and pH) and by geographic distance. We used cultivation-independent methods to investigate the prokaryotic biogeography of the water column in six salt lakes in Inner Mongolia, China, and a salt lake in Argentina. These lakes had different salt compositions and pH values and were at variable geographic distances, on both local and intercontinental scales, which allowed us to explore the microbial community composition within the context of both contemporary environmental conditions and geographic distance. Fourteen 16S rRNA gene clone libraries were constructed, and over 200 16S rRNA gene sequences were obtained. These sequences were used to construct biotic similarity matrices, which were used in combination with environmental similarity matrices and a distance matrix in the Mantel test to discover which factors significantly influenced biotic similarity. We showed that archaeal biogeography was influenced by contemporary environmental factors alone (Na+, CO3(2-), and HCO3(-) ion concentrations; pH; and temperature). Bacterial biogeography was influenced both by contemporary environmental factors (Na+, Mg2+, and HCO3(-) ion concentrations and pH) and by geographic distance. We used cultivation-independent methods to investigate the prokaryotic biogeography of the water column in six salt lakes in Inner Mongolia, China, and a salt lake in Argentina. These lakes had different salt compositions and pH values and were at variable geographic distances, on both local and intercontinental scales, which allowed us to explore the microbial community composition within the context of both contemporary environmental conditions and geographic distance. Fourteen 16S rRNA gene clone libraries were constructed, and over 200 16S rRNA gene sequences were obtained. These sequences were used to construct biotic similarity matrices, which were used in combination with environmental similarity matrices and a distance matrix in the Mantel test to discover which factors significantly influenced biotic similarity. We showed that archaeal biogeography was influenced by contemporary environmental factors alone (Na + , CO 3 2− , and HCO 3 − ion concentrations; pH; and temperature). Bacterial biogeography was influenced both by contemporary environmental factors (Na + , Mg 2+ , and HCO 3 − ion concentrations and pH) and by geographic distance. We used cultivation-independent methods to investigate the prokaryotic biogeography of the water column in six salt lakes in Inner Mongolia, China, and a salt lake in Argentina. These lakes had different salt compositions and pH values and were at variable geographic distances, on both local and intercontinental scales, which allowed us to explore the microbial community composition within the context of both contemporary environmental conditions and geographic distance. Fourteen 16S rRNA gene clone libraries were constructed, and over 200 16S rRNA gene sequences were obtained. These sequences were used to construct biotic similarity matrices, which were used in combination with environmental similarity matrices and a distance matrix in the Mantel test to discover which factors significantly influenced biotic similarity. We showed that archaeal biogeography was influenced by contemporary environmental factors alone (..., ..., and ... ion concentrations; pH; and temperature). Bacterial biogeography was influenced both by contemporary environmental factors (..., ..., and ... ion concentrations and pH) and by geographic distance. (ProQuest: ... denotes formulae/symbols omitted.) We used cultivation-independent methods to investigate the prokaryotic biogeography of the water column in six salt lakes in Inner Mongolia, China, and a salt lake in Argentina. These lakes had different salt compositions and pH values and were at variable geographic distances, on both local and intercontinental scales, which allowed us to explore the microbial community composition within the context of both contemporary environmental conditions and geographic distance. Fourteen 16S rRNA gene clone libraries were constructed, and over 200 16S rRNA gene sequences were obtained. These sequences were used to construct biotic similarity matrices, which were used in combination with environmental similarity matrices and a distance matrix in the Mantel test to discover which factors significantly influenced biotic similarity. We showed that archaeal biogeography was influenced by contemporary environmental factors alone (Na+, CO32-, and HCO3- ion concentrations; pH; and temperature). Bacterial biogeography was influenced both by contemporary environmental factors (Na+, Mg2+, and HCO3- ion concentrations and pH) and by geographic distance. 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Author | Heaphy, Shaun Pagaling, Eulyn Cowan, Don A Ma, Yanhe Wang, Huanzhi Jones, Brian E Grant, William D Ventosa, Antonio Venables, Madeleine Wallace, Andrew |
AuthorAffiliation | Department of Infection, Immunity and Inflammation, University of Leicester, University Road, Leicester LE1 9HN, United Kingdom, 1 Department of Biotechnology, University of the Western Cape, Bellville 7535, Cape Town, South Africa, 2 Genencor International B.V., Archimedesweg 30, 2333 CN Leiden, The Netherlands, 3 State Key Laboratory of Microbial Resource, Institute of Microbiology, Chinese Academy of Sciences, 100080 Beijing, China, 4 Department of Microbiology and Parasitology, Faculty of Pharmacy, University of Seville, 41012 Seville, Spain 5 |
AuthorAffiliation_xml | – name: Department of Infection, Immunity and Inflammation, University of Leicester, University Road, Leicester LE1 9HN, United Kingdom, 1 Department of Biotechnology, University of the Western Cape, Bellville 7535, Cape Town, South Africa, 2 Genencor International B.V., Archimedesweg 30, 2333 CN Leiden, The Netherlands, 3 State Key Laboratory of Microbial Resource, Institute of Microbiology, Chinese Academy of Sciences, 100080 Beijing, China, 4 Department of Microbiology and Parasitology, Faculty of Pharmacy, University of Seville, 41012 Seville, Spain 5 |
Author_xml | – sequence: 1 fullname: Pagaling, Eulyn – sequence: 2 fullname: Wang, Huanzhi – sequence: 3 fullname: Venables, Madeleine – sequence: 4 fullname: Wallace, Andrew – sequence: 5 fullname: Grant, William D – sequence: 6 fullname: Cowan, Don A – sequence: 7 fullname: Jones, Brian E – sequence: 8 fullname: Ma, Yanhe – sequence: 9 fullname: Ventosa, Antonio – sequence: 10 fullname: Heaphy, Shaun |
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Notes | ObjectType-Article-2 SourceType-Scholarly Journals-1 ObjectType-Feature-1 content type line 23 ObjectType-Article-1 ObjectType-Feature-2 Corresponding author. Mailing address: Department of Infection, Immunity, and Inflammation, University of Leicester, University Road, Leicester LE1 9HN, United Kingdom. Phone: 44 116 252 2973. Fax: 44 116 252 5030. E-mail: sh1@le.ac.uk |
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Snippet | We used cultivation-independent methods to investigate the prokaryotic biogeography of the water column in six salt lakes in Inner Mongolia, China, and a salt... Classifications Services AEM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit... ABSTRACT We used cultivation-independent methods to investigate the prokaryotic biogeography of the water column in six salt lakes in Inner Mongolia, China,... |
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SubjectTerms | Archaea - classification Archaea - genetics Archaea - isolation & purification Argentina Bacteria - classification Bacteria - genetics Bacteria - isolation & purification Biodiversity Biogeography Biological and medical sciences China Cluster Analysis DNA, Archaeal - chemistry DNA, Archaeal - genetics DNA, Bacterial - chemistry DNA, Bacterial - genetics DNA, Ribosomal - chemistry DNA, Ribosomal - genetics Fundamental and applied biological sciences. Psychology Genes Genes, rRNA Hydrogen-Ion Concentration International comparisons Lakes Microbial Ecology Microbiology Molecular Sequence Data Organisms Phylogeny Ribonucleic acid RNA RNA, Archaeal - genetics RNA, Bacterial - genetics RNA, Ribosomal, 16S - genetics Salts - analysis Sequence Analysis, DNA Sequence Homology, Nucleic Acid Water - analysis Water Microbiology |
Title | Microbial Biogeography of Six Salt Lakes in Inner Mongolia, China, and a Salt Lake in Argentina |
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