New measures for assessing model equilibrium and prediction mismatch in species distribution models

Models based on species distributions are widely used and serve important purposes in ecology, biogeography and conservation. Their continuous predictions of environmental suitability are commonly converted into a binary classification of predicted (or potential) presences and absences, whose accura...

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Published inDiversity & distributions Vol. 19; no. 10; pp. 1333 - 1338
Main Authors Márcia Barbosa, A., Real, Raimundo, Muñoz, A.-Román, Brown, Jennifer A.
Format Journal Article
LanguageEnglish
Published Oxford Blackwell Publishing Ltd 01.10.2013
John Wiley & Sons Ltd
Blackwell
John Wiley & Sons, Inc
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Abstract Models based on species distributions are widely used and serve important purposes in ecology, biogeography and conservation. Their continuous predictions of environmental suitability are commonly converted into a binary classification of predicted (or potential) presences and absences, whose accuracy is then evaluated through a number of measures that have been the subject of recent reviews. We propose four additional measures that analyse observation-prediction mismatch from a different angle – namely, from the perspective of the predicted rather than the observed area – and add to the existing toolset of model evaluation methods. We explain how these measures can complete the view provided by the existing measures, allowing further insights into distribution model predictions. We also describe how they can be particularly useful when using models to forecast the spread of diseases or of invasive species and to predict modifications in species' distributions under climate and land-use change.
AbstractList Models based on species distributions are widely used and serve important purposes in ecology, biogeography and conservation. Their continuous predictions of environmental suitability are commonly converted into a binary classification of predicted (or potential) presences and absences, whose accuracy is then evaluated through a number of measures that have been the subject of recent reviews. We propose four additional measures that analyse observation-prediction mismatch from a different angle - namely, from the perspective of the predicted rather than the observed area - and add to the existing toolset of model evaluation methods. We explain how these measures can complete the view provided by the existing measures, allowing further insights into distribution model predictions. We also describe how they can be particularly useful when using models to forecast the spread of diseases or of invasive species and to predict modifications in species' distributions under climate and land-use change.
Models based on species distributions are widely used and serve important purposes in ecology, biogeography and conservation. Their continuous predictions of environmental suitability are commonly converted into a binary classification of predicted (or potential) presences and absences, whose accuracy is then evaluated through a number of measures that have been the subject of recent reviews. We propose four additional measures that analyse observation-prediction mismatch from a different angle - namely, from the perspective of the predicted rather than the observed area - and add to the existing toolset of model evaluation methods. We explain how these measures can complete the view provided by the existing measures, allowing further insights into distribution model predictions. We also describe how they can be particularly useful when using models to forecast the spread of diseases or of invasive species and to predict modifications in species' distributions under climate and land-use change. [PUBLICATION ABSTRACT]
Author Márcia Barbosa, A.
Real, Raimundo
Brown, Jennifer A.
Muñoz, A.-Román
Author_xml – sequence: 1
  givenname: A.
  surname: Márcia Barbosa
  fullname: Márcia Barbosa, A.
  email: Correspondence: A. Márcia Barbosa, Cátedra 'Rui Nabeiro - Delta Cafés' Biodiversidade, Centro de Investigação em Biodiversidade e Recursos Genéticos (CIBIO), Universidade de Évora, 7004-516 Évora, Portugal., barbosa@uevora.pt
  organization: 'Rui Nabeiro - Delta Cafés' Biodiversity Chair, Centro de Investigação em Biodiversidade e Recursos Genéticos (CIBIO), University of Évora, 7004-516, Évora, Portugal
– sequence: 2
  givenname: Raimundo
  surname: Real
  fullname: Real, Raimundo
  organization: Biogeography, Diversity and Conservation Lab, Department of Animal Biology, Faculty of Sciences, University of Málaga, 29071, Málaga, Spain
– sequence: 3
  givenname: A.-Román
  surname: Muñoz
  fullname: Muñoz, A.-Román
  organization: Fundación MIGRES, N-340, Km. 96 Huerta Grande, Pelayo, E-11390, Algeciras, Spain
– sequence: 4
  givenname: Jennifer A.
  surname: Brown
  fullname: Brown, Jennifer A.
  organization: Department of Mathematics and Statistics, University of Canterbury, Christchurch, New Zealand
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Issue 10
Keywords Prediction
predictive performance
Commission
under-prediction
Error
Model study
Biodiversity
Forecast model
Modeling
distribution equilibrium
Spatial distribution
Geographic distribution
model evaluation
prediction error
Performance
omission
over-prediction
Distribution range
Language English
License http://onlinelibrary.wiley.com/termsAndConditions#vor
CC BY 4.0
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Notes European Social Fund
New Zealand Institute of Mathematics and its Applications (NZIMA) and the University of Canterbury
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ArticleID:DDI12100
FEDER
Junta de Andalucía
Appendix S1 Case studies on species with varying prevalence. Figure S1 Observed (black) and potential (grey) presences of restricted-range (including an invasive) species on UTM 10 × 10-km grid cells of mainland Spain, their prevalence and model evaluation measures. Figure S2 Observed (black) and potential (grey) presences of relatively widespread species on UTM 10 × 10-km grid cells of mainland Spain, their prevalence and model evaluation measures. Figure S3 Variation of the four analysed evaluation measure pairs along the range of possible thresholds (at 0.01 intervals) for the four restricted-range species analysed. Figure S4 Variation of the four analysed evaluation measure pairs along the range of possible thresholds (at 0.01 intervals) for the more widespread species analysed.
Ministerio de Ciencia e Innovación (Spain)
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Nenzén, H.K. & Araújo, M.B. (2011) Choice of threshold alters projections of species range shifts under climate change. Ecological Modelling, 222, 3346-3354.
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Snippet Models based on species distributions are widely used and serve important purposes in ecology, biogeography and conservation. Their continuous predictions of...
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SubjectTerms Animal and plant ecology
Animal, plant and microbial ecology
Applied ecology
Biodiversity
Biodiversity conservation
BIODIVERSITY LETTER
Biogeography
Biological and medical sciences
Climate change
Commission
Conservation biology
Disease models
distribution equilibrium
Ecological modeling
Environmental conservation
Fundamental and applied biological sciences. Psychology
General aspects
General aspects. Techniques
Invasive species
Land use
Methods and techniques (sampling, tagging, trapping, modelling...)
model evaluation
Modeling
omission
over-prediction
prediction error
Predictive modeling
predictive performance
Species
Synecology
under-prediction
Wildlife conservation
Title New measures for assessing model equilibrium and prediction mismatch in species distribution models
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