Pavian: interactive analysis of metagenomics data for microbiome studies and pathogen identification

• Published in: Bioinformatics Vol. 36; no. 4; pp. 1303 - 1304
• Main Authors: Breitwieser, Florian P, Salzberg, Steven L
• Format: Journal Article
• Language: English
• Published: England Oxford University Press 15.02.2020
• Subjects: Applications Notes; Data Interpretation, Statistical; Metagenomics; Microbiota; Software

Abstract Summary Pavian is a web application for exploring classification results from metagenomics experiments. With Pavian, researchers can analyze, visualize and transform results from various classifiers—such as Kraken, Centrifuge and MethaPhlAn—using interactive data tables, heatmaps and Sankey...