RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference

Abstract Motivation Phylogenies are important for fundamental biological research, but also have numerous applications in biotechnology, agriculture and medicine. Finding the optimal tree under the popular maximum likelihood (ML) criterion is known to be NP-hard. Thus, highly optimized and scalable...

Full description

Saved in:

Bibliographic Details
Published in	Bioinformatics Vol. 35; no. 21; pp. 4453 - 4455
Main Authors	Kozlov, Alexey M, Darriba, Diego, Flouri, Tomáš, Morel, Benoit, Stamatakis, Alexandros
Format	Journal Article
Language	English
Published	England Oxford University Press 01.11.2019
Subjects	Applications Notes
Online Access	Get full text

Cover

Loading…

Abstract	Abstract Motivation Phylogenies are important for fundamental biological research, but also have numerous applications in biotechnology, agriculture and medicine. Finding the optimal tree under the popular maximum likelihood (ML) criterion is known to be NP-hard. Thus, highly optimized and scalable codes are needed to analyze constantly growing empirical datasets. Results We present RAxML-NG, a from-scratch re-implementation of the established greedy tree search algorithm of RAxML/ExaML. RAxML-NG offers improved accuracy, flexibility, speed, scalability, and usability compared with RAxML/ExaML. On taxon-rich datasets, RAxML-NG typically finds higher-scoring trees than IQTree, an increasingly popular recent tool for ML-based phylogenetic inference (although IQ-Tree shows better stability). Finally, RAxML-NG introduces several new features, such as the detection of terraces in tree space and the recently introduced transfer bootstrap support metric. Availability and implementation The code is available under GNU GPL at https://github.com/amkozlov/raxml-ng. RAxML-NG web service (maintained by Vital-IT) is available at https://raxml-ng.vital-it.ch/. Supplementary information Supplementary data are available at Bioinformatics online.
AbstractList	Phylogenies are important for fundamental biological research, but also have numerous applications in biotechnology, agriculture and medicine. Finding the optimal tree under the popular maximum likelihood (ML) criterion is known to be NP-hard. Thus, highly optimized and scalable codes are needed to analyze constantly growing empirical datasets.MOTIVATIONPhylogenies are important for fundamental biological research, but also have numerous applications in biotechnology, agriculture and medicine. Finding the optimal tree under the popular maximum likelihood (ML) criterion is known to be NP-hard. Thus, highly optimized and scalable codes are needed to analyze constantly growing empirical datasets.We present RAxML-NG, a from-scratch re-implementation of the established greedy tree search algorithm of RAxML/ExaML. RAxML-NG offers improved accuracy, flexibility, speed, scalability, and usability compared with RAxML/ExaML. On taxon-rich datasets, RAxML-NG typically finds higher-scoring trees than IQTree, an increasingly popular recent tool for ML-based phylogenetic inference (although IQ-Tree shows better stability). Finally, RAxML-NG introduces several new features, such as the detection of terraces in tree space and the recently introduced transfer bootstrap support metric.RESULTSWe present RAxML-NG, a from-scratch re-implementation of the established greedy tree search algorithm of RAxML/ExaML. RAxML-NG offers improved accuracy, flexibility, speed, scalability, and usability compared with RAxML/ExaML. On taxon-rich datasets, RAxML-NG typically finds higher-scoring trees than IQTree, an increasingly popular recent tool for ML-based phylogenetic inference (although IQ-Tree shows better stability). Finally, RAxML-NG introduces several new features, such as the detection of terraces in tree space and the recently introduced transfer bootstrap support metric.The code is available under GNU GPL at https://github.com/amkozlov/raxml-ng. RAxML-NG web service (maintained by Vital-IT) is available at https://raxml-ng.vital-it.ch/.AVAILABILITY AND IMPLEMENTATIONThe code is available under GNU GPL at https://github.com/amkozlov/raxml-ng. RAxML-NG web service (maintained by Vital-IT) is available at https://raxml-ng.vital-it.ch/.Supplementary data are available at Bioinformatics online.SUPPLEMENTARY INFORMATIONSupplementary data are available at Bioinformatics online. Abstract Motivation Phylogenies are important for fundamental biological research, but also have numerous applications in biotechnology, agriculture and medicine. Finding the optimal tree under the popular maximum likelihood (ML) criterion is known to be NP-hard. Thus, highly optimized and scalable codes are needed to analyze constantly growing empirical datasets. Results We present RAxML-NG, a from-scratch re-implementation of the established greedy tree search algorithm of RAxML/ExaML. RAxML-NG offers improved accuracy, flexibility, speed, scalability, and usability compared with RAxML/ExaML. On taxon-rich datasets, RAxML-NG typically finds higher-scoring trees than IQTree, an increasingly popular recent tool for ML-based phylogenetic inference (although IQ-Tree shows better stability). Finally, RAxML-NG introduces several new features, such as the detection of terraces in tree space and the recently introduced transfer bootstrap support metric. Availability and implementation The code is available under GNU GPL at https://github.com/amkozlov/raxml-ng. RAxML-NG web service (maintained by Vital-IT) is available at https://raxml-ng.vital-it.ch/. Supplementary information Supplementary data are available at Bioinformatics online. Phylogenies are important for fundamental biological research, but also have numerous applications in biotechnology, agriculture, and medicine. Finding the optimal tree under the popular maximum likelihood (ML) criterion is known to be NP-hard. Thus, highly optimized and scalable codes are needed to analyze constantly growing empirical datasets. We present RAxML-NG, a from scratch re-implementation of the established greedy tree search algorithm of RAxML/ExaML. RAxML-NG offers improved accuracy, flexibility, speed, scalability, and usability compared to RAxML/ExaML. On taxon-rich datasets, RAxML-NG typically finds higher-scoring trees than IQTree, an increasingly popular recent tool for ML-based phylogenetic inference (although IQ-Tree shows better stability). Finally, RAxML-NG introduces several new features, such as the detection of terraces in tree space and a the recently introduced transfer bootstrap support metric. The code is available under GNU GPL at https://github.com/amkozlov/raxml-ng. RAxML-NG web service (maintained by Vital-IT) is available at https://raxml-ng.vital-it.ch/. Supplementary data are available at Bioinformatics online.
Author	Stamatakis, Alexandros Darriba, Diego Flouri, Tomáš Kozlov, Alexey M Morel, Benoit
AuthorAffiliation	2 Institute of Theoretical Informatics, Karlsruhe Institute of Technology , Karlsruhe, Germany 1 Computational Molecular Evolution Group, Heidelberg Institute for Theoretical Studies , Heidelberg, Germany
AuthorAffiliation_xml	– name: 1 Computational Molecular Evolution Group, Heidelberg Institute for Theoretical Studies , Heidelberg, Germany – name: 2 Institute of Theoretical Informatics, Karlsruhe Institute of Technology , Karlsruhe, Germany
Author_xml	– sequence: 1 givenname: Alexey M orcidid: 0000-0001-7394-2718 surname: Kozlov fullname: Kozlov, Alexey M email: alexey.kozlov@h-its.org organization: Computational Molecular Evolution Group, Heidelberg Institute for Theoretical Studies, Heidelberg, Germany – sequence: 2 givenname: Diego orcidid: 0000-0001-5482-3932 surname: Darriba fullname: Darriba, Diego organization: Computational Molecular Evolution Group, Heidelberg Institute for Theoretical Studies, Heidelberg, Germany – sequence: 3 givenname: Tomáš surname: Flouri fullname: Flouri, Tomáš organization: Computational Molecular Evolution Group, Heidelberg Institute for Theoretical Studies, Heidelberg, Germany – sequence: 4 givenname: Benoit surname: Morel fullname: Morel, Benoit organization: Computational Molecular Evolution Group, Heidelberg Institute for Theoretical Studies, Heidelberg, Germany – sequence: 5 givenname: Alexandros surname: Stamatakis fullname: Stamatakis, Alexandros organization: Computational Molecular Evolution Group, Heidelberg Institute for Theoretical Studies, Heidelberg, Germany
BackLink	https://www.ncbi.nlm.nih.gov/pubmed/31070718$$D View this record in MEDLINE/PubMed
BookMark	eNqNkd1LHDEUxYMoftU_wZLHPjg1mZv5aqEgUm1hq1Da55DJ3ripmWSbzIjbv94sq0V9aZ9yIfec3-GeA7Ltg0dCjjl7z1kHp70N1psQBzVanU778Q-waovsc1GzomRVt51nqJtCtAz2yEFKvxiruBBil-wBZw1reLtP5Pez-2-z4uryA1XUqDSe0KSVU71DqvycTgljYaJFP3crOobgaIbSQd3bYRqos7fo7CKEOV0uVi7coMech-ZoGNFrfEN2jHIJjx7fQ_Lz4vOP8y_F7Pry6_nZrNAVb8cCgfOuqg2ItsoR67LthOGtUJVhnSm5ElDrruuxbkCoPJS10EI0oMAoaDkckk8b3-XUDzjX6MeonFxGO6i4kkFZ-fLH24W8CXeybksO0GSDd48GMfyeMI1ysEmjc8pjmJIsS-BdKRisWW-fs_5Cnq6aFz5uFnQMKUU0Utsx9xTWaOskZ3LdoXzZodx0mNXVK_UT4F86ttGFafmfkgetD7na
CitedBy_id	crossref_primary_10_1093_molbev_msad258 crossref_primary_10_1093_molbev_msae105 crossref_primary_10_1186_s12915_020_00921_1 crossref_primary_10_3390_plants10061157 crossref_primary_10_1002_tax_12937 crossref_primary_10_1111_nph_18796 crossref_primary_10_1111_tpj_15313 crossref_primary_10_1016_j_syapm_2022_126344 crossref_primary_10_1093_jcbiol_ruae013 crossref_primary_10_1128_aem_00277_22 crossref_primary_10_1098_rsos_202023 crossref_primary_10_3767_persoonia_2021_47_06 crossref_primary_10_1016_j_cbpc_2024_109870 crossref_primary_10_1007_s00338_024_02592_8 crossref_primary_10_1016_j_protis_2025_126089 crossref_primary_10_1093_aob_mcaa053 crossref_primary_10_1038_s41598_023_49696_9 crossref_primary_10_1177_10943420231201154 crossref_primary_10_1093_molbev_msad246 crossref_primary_10_3897_phytokeys_230_107733 crossref_primary_10_1080_23802359_2023_2275332 crossref_primary_10_1111_nph_17456 crossref_primary_10_1093_molbev_msad243 crossref_primary_10_1016_j_meegid_2024_105677 crossref_primary_10_1016_j_ajic_2025_03_013 crossref_primary_10_1007_s10914_022_09634_4 crossref_primary_10_1093_ve_veab101 crossref_primary_10_3389_fmicb_2024_1487917 crossref_primary_10_1038_s41598_025_91208_4 crossref_primary_10_1111_jse_13040 crossref_primary_10_1094_PDIS_05_23_0941_PDN crossref_primary_10_1098_rsob_230215 crossref_primary_10_1094_PHYTOFR_12_22_0148_A crossref_primary_10_1093_bioinformatics_btac832 crossref_primary_10_3389_fmicb_2021_709418 crossref_primary_10_1093_molbev_msad277 crossref_primary_10_1111_tpj_16620 crossref_primary_10_1073_pnas_2301926120 crossref_primary_10_1038_s41598_024_57869_3 crossref_primary_10_1111_eva_70053 crossref_primary_10_1126_science_adk9688 crossref_primary_10_1111_1365_2656_13767 crossref_primary_10_3389_fmicb_2020_598990 crossref_primary_10_1371_journal_pone_0280155 crossref_primary_10_1186_s12864_022_08940_8 crossref_primary_10_3389_fpls_2022_851716 crossref_primary_10_1080_23802359_2024_2397979 crossref_primary_10_1021_acs_est_1c05635 crossref_primary_10_1016_j_cub_2021_06_033 crossref_primary_10_1186_s12864_024_10858_2 crossref_primary_10_1016_j_gene_2024_148506 crossref_primary_10_1080_0028825X_2022_2093120 crossref_primary_10_1093_femsle_fnad031 crossref_primary_10_3390_plants12173083 crossref_primary_10_1038_s41467_024_52687_7 crossref_primary_10_1126_science_abc0256 crossref_primary_10_1094_PHYTO_01_23_0025_R crossref_primary_10_1038_s41586_024_07070_3 crossref_primary_10_1038_s41598_023_35524_7 crossref_primary_10_1128_spectrum_00782_23 crossref_primary_10_3389_fpls_2022_920826 crossref_primary_10_1111_jeu_13028 crossref_primary_10_47371_mycosci_2021_10_005 crossref_primary_10_7554_eLife_84384 crossref_primary_10_1186_s43008_020_00039_7 crossref_primary_10_1111_nph_19202 crossref_primary_10_1093_botlinnean_boac056 crossref_primary_10_1002_ece3_10404 crossref_primary_10_1038_s41559_023_02230_6 crossref_primary_10_3390_genes14061130 crossref_primary_10_1038_s41598_022_07185_5 crossref_primary_10_3897_mycokeys_111_139620 crossref_primary_10_3390_v13122524 crossref_primary_10_1016_j_gene_2023_147336 crossref_primary_10_11646_zootaxa_5590_1_3 crossref_primary_10_1186_s12870_022_03836_x crossref_primary_10_1093_molbev_msae134 crossref_primary_10_1093_biomethods_bpac032 crossref_primary_10_2147_IDR_S448253 crossref_primary_10_7717_peerj_18771 crossref_primary_10_1002_lno_12087 crossref_primary_10_7554_eLife_76780 crossref_primary_10_1128_mSphere_00535_21 crossref_primary_10_5091_plecevo_91373 crossref_primary_10_1590_1982_0224_2020_0082 crossref_primary_10_1007_s00572_024_01145_9 crossref_primary_10_1093_botlinnean_boac071 crossref_primary_10_3389_fpubh_2022_990894 crossref_primary_10_11646_zootaxa_5556_1_6 crossref_primary_10_1128_mbio_01718_24 crossref_primary_10_1093_zoolinnean_zlad002 crossref_primary_10_1007_s41826_023_00079_z crossref_primary_10_3201_eid2903_221060 crossref_primary_10_3390_jof10070459 crossref_primary_10_1111_mec_16184 crossref_primary_10_1038_s41598_023_44457_0 crossref_primary_10_1111_mec_17033 crossref_primary_10_1080_23802359_2021_1917315 crossref_primary_10_1038_s41597_025_04634_4 crossref_primary_10_1038_s41598_025_86079_8 crossref_primary_10_3354_ame01960 crossref_primary_10_1600_036364421X16370110179500 crossref_primary_10_7554_eLife_78981 crossref_primary_10_11646_zootaxa_5387_1_1 crossref_primary_10_1073_pnas_2317240121 crossref_primary_10_1111_jeu_13072 crossref_primary_10_1038_s42003_024_06347_7 crossref_primary_10_3390_biology11091256 crossref_primary_10_1186_s13059_025_03524_7 crossref_primary_10_3390_horticulturae10121325 crossref_primary_10_1094_MPMI_11_21_0284_A crossref_primary_10_3897_aiep_53_103579 crossref_primary_10_1093_bioinformatics_btaa1020 crossref_primary_10_3389_fpls_2020_00690 crossref_primary_10_3390_microorganisms8060805 crossref_primary_10_1080_00275514_2023_2251365 crossref_primary_10_1186_s12864_024_10035_5 crossref_primary_10_3390_insects13040378 crossref_primary_10_1128_spectrum_05312_22 crossref_primary_10_1016_j_jgar_2025_02_006 crossref_primary_10_1093_isd_ixae015 crossref_primary_10_1093_jac_dkac199 crossref_primary_10_3389_fmicb_2024_1343227 crossref_primary_10_1371_journal_pntd_0010982 crossref_primary_10_1128_spectrum_02313_24 crossref_primary_10_1007_s00239_023_10133_0 crossref_primary_10_1016_j_jasrep_2025_105008 crossref_primary_10_1126_sciadv_abi9784 crossref_primary_10_1016_j_funbio_2021_08_005 crossref_primary_10_3897_phytokeys_246_125734 crossref_primary_10_1002_ange_202405120 crossref_primary_10_1099_mgen_0_001266 crossref_primary_10_1111_mec_16601 crossref_primary_10_1099_mgen_0_001270 crossref_primary_10_1099_mgen_0_001272 crossref_primary_10_1186_s12870_023_04034_z crossref_primary_10_1264_jsme2_ME23093 crossref_primary_10_1016_j_myc_2020_03_004 crossref_primary_10_1007_s00705_023_05852_0 crossref_primary_10_1038_s41396_022_01299_4 crossref_primary_10_1093_gbe_evae085 crossref_primary_10_1002_mrd_23745 crossref_primary_10_1111_1462_2920_15219 crossref_primary_10_1093_g3journal_jkac187 crossref_primary_10_1111_gbi_12419 crossref_primary_10_1111_zsc_12618 crossref_primary_10_1016_j_xplc_2024_100847 crossref_primary_10_1080_23802359_2022_2145174 crossref_primary_10_3114_fuse_2023_12_13 crossref_primary_10_1007_s13562_022_00773_6 crossref_primary_10_1016_j_csbj_2024_06_014 crossref_primary_10_1007_s11103_021_01214_z crossref_primary_10_1038_s41467_024_50384_z crossref_primary_10_1371_journal_pbio_3001006 crossref_primary_10_1099_mgen_0_001279 crossref_primary_10_3389_fmicb_2023_1216130 crossref_primary_10_1007_s13127_024_00645_y crossref_primary_10_3389_fmicb_2023_1254860 crossref_primary_10_3114_fuse_2023_12_14 crossref_primary_10_1128_msystems_00387_23 crossref_primary_10_3390_jof8030311 crossref_primary_10_1016_j_jcz_2021_05_011 crossref_primary_10_1128_aem_01554_22 crossref_primary_10_1016_j_syapm_2024_126505 crossref_primary_10_3390_f15060940 crossref_primary_10_1093_molbev_msae182 crossref_primary_10_1111_1462_2920_16525 crossref_primary_10_1371_journal_ppat_1008763 crossref_primary_10_1109_ACCESS_2021_3104527 crossref_primary_10_1080_23802359_2022_2087558 crossref_primary_10_1099_mgen_0_001287 crossref_primary_10_3897_zookeys_1083_72939 crossref_primary_10_1093_mollus_eyz032 crossref_primary_10_1080_09670262_2022_2126894 crossref_primary_10_1128_spectrum_02238_22 crossref_primary_10_1080_03079457_2024_2372486 crossref_primary_10_3389_fmicb_2024_1428766 crossref_primary_10_1186_s12879_022_07541_w crossref_primary_10_1016_j_pld_2021_06_007 crossref_primary_10_3389_fmicb_2021_731711 crossref_primary_10_1163_18759866_bja10030 crossref_primary_10_1111_mec_15726 crossref_primary_10_1186_s12864_022_08628_z crossref_primary_10_3389_fpls_2023_1320638 crossref_primary_10_7554_eLife_46454 crossref_primary_10_1016_j_celrep_2021_109940 crossref_primary_10_1099_ijsem_0_005727 crossref_primary_10_1016_j_chom_2021_05_012 crossref_primary_10_70186_sbaeeVWOQ9374 crossref_primary_10_1093_ve_veac057 crossref_primary_10_3390_plants12010069 crossref_primary_10_1038_s41597_024_03136_z crossref_primary_10_1016_j_funeco_2022_101152 crossref_primary_10_1016_j_isci_2023_107481 crossref_primary_10_3389_fpls_2021_725728 crossref_primary_10_11646_zootaxa_5270_1_3 crossref_primary_10_1016_j_marpolbul_2023_115102 crossref_primary_10_1590_s1984_29612022021 crossref_primary_10_1655_Herpetologica_D_22_00022 crossref_primary_10_3390_antibiotics14010067 crossref_primary_10_1371_journal_pone_0292965 crossref_primary_10_3389_fmicb_2022_947687 crossref_primary_10_3389_fmicb_2024_1483110 crossref_primary_10_1099_ijsem_0_004425 crossref_primary_10_1016_j_toxicon_2021_12_014 crossref_primary_10_1038_s41598_020_67999_z crossref_primary_10_1080_00318884_2021_1880755 crossref_primary_10_1038_s41467_023_40407_6 crossref_primary_10_1016_j_cub_2024_04_085 crossref_primary_10_3390_v14010104 crossref_primary_10_1007_s00239_023_10124_1 crossref_primary_10_1016_j_ympev_2022_107465 crossref_primary_10_1371_journal_pntd_0011864 crossref_primary_10_1186_s12864_024_11007_5 crossref_primary_10_1128_mBio_02755_20 crossref_primary_10_3389_fgene_2020_591833 crossref_primary_10_3390_horticulturae9121261 crossref_primary_10_3389_fpls_2024_1445022 crossref_primary_10_1186_s12985_024_02471_2 crossref_primary_10_1128_JVI_01070_20 crossref_primary_10_1186_s12915_023_01630_1 crossref_primary_10_1099_mgen_0_001233 crossref_primary_10_1080_00318884_2025_2471608 crossref_primary_10_1016_j_cub_2024_02_002 crossref_primary_10_1128_spectrum_03855_22 crossref_primary_10_3897_phytokeys_211_89408 crossref_primary_10_5802_crbiol_29 crossref_primary_10_1038_s41598_020_67679_y crossref_primary_10_1038_s44298_024_00058_w crossref_primary_10_1093_nar_gkad1104 crossref_primary_10_1016_j_ympev_2023_107732 crossref_primary_10_1080_23802359_2022_2055502 crossref_primary_10_3389_fmicb_2020_606612 crossref_primary_10_1128_mbio_00016_22 crossref_primary_10_3389_fpls_2021_659275 crossref_primary_10_3389_fmicb_2020_01699 crossref_primary_10_1016_j_ympev_2021_107161 crossref_primary_10_1128_mbio_01342_24 crossref_primary_10_1655_Herpetologica_D_22_00046 crossref_primary_10_7717_peerj_16188 crossref_primary_10_47371_mycosci_2021_03_003 crossref_primary_10_1002_ange_202501425 crossref_primary_10_3389_fmicb_2023_1240206 crossref_primary_10_47371_mycosci_2021_03_009 crossref_primary_10_3897_zookeys_1174_101251 crossref_primary_10_1016_j_aquaculture_2025_742418 crossref_primary_10_3390_d14090731 crossref_primary_10_3389_fmicb_2022_962856 crossref_primary_10_11646_zootaxa_4999_3_3 crossref_primary_10_3389_fpls_2023_1124905 crossref_primary_10_3390_d15030450 crossref_primary_10_1126_sciadv_add3783 crossref_primary_10_1007_s00705_022_05503_w crossref_primary_10_1186_s43008_024_00147_8 crossref_primary_10_3390_v16060919 crossref_primary_10_1186_s12992_023_00959_0 crossref_primary_10_2139_ssrn_4170158 crossref_primary_10_1080_00275514_2021_1966246 crossref_primary_10_1038_s41467_024_46080_7 crossref_primary_10_1080_23802359_2020_1855604 crossref_primary_10_1073_pnas_2105225118 crossref_primary_10_1515_mammalia_2020_0183 crossref_primary_10_1038_s41467_024_51018_0 crossref_primary_10_1093_gbe_evae032 crossref_primary_10_1016_j_ympev_2022_107455 crossref_primary_10_47371_mycosci_2023_06_001 crossref_primary_10_1016_j_ympev_2022_107456 crossref_primary_10_1128_AEM_02707_20 crossref_primary_10_17109_AZH_69_3_303_2023 crossref_primary_10_1128_mSystems_00787_21 crossref_primary_10_1007_s10482_022_01750_8 crossref_primary_10_4142_jvs_24031 crossref_primary_10_1099_mgen_0_000456 crossref_primary_10_1101_gr_278977_124 crossref_primary_10_1002_ajp_23701 crossref_primary_10_1128_mra_01052_23 crossref_primary_10_1128_spectrum_03860_22 crossref_primary_10_1109_TCBB_2023_3278049 crossref_primary_10_1016_j_ympev_2023_107708 crossref_primary_10_1016_j_ympev_2023_107706 crossref_primary_10_1007_s10592_023_01584_5 crossref_primary_10_1093_jac_dkab379 crossref_primary_10_1094_PHYTO_01_23_0022_SA crossref_primary_10_1111_zsc_12697 crossref_primary_10_1126_science_aba4674 crossref_primary_10_1080_23802359_2023_2294893 crossref_primary_10_1073_pnas_2006659117 crossref_primary_10_1007_s11557_020_01588_2 crossref_primary_10_1038_s42003_024_06266_7 crossref_primary_10_7717_peerj_12992 crossref_primary_10_1016_j_ympev_2022_107430 crossref_primary_10_1111_nph_20187 crossref_primary_10_1099_mgen_0_000463 crossref_primary_10_1002_lno_11997 crossref_primary_10_1038_s41597_024_03043_3 crossref_primary_10_1111_mec_16554 crossref_primary_10_1371_journal_ppat_1008812 crossref_primary_10_1002_ajb2_16456 crossref_primary_10_1038_s41598_022_10428_0 crossref_primary_10_1080_0028825X_2021_1965629 crossref_primary_10_1016_j_ppees_2024_125843 crossref_primary_10_1080_23802359_2020_1793699 crossref_primary_10_1371_journal_pgen_1009566 crossref_primary_10_1002_imt2_87 crossref_primary_10_1111_jeu_12991 crossref_primary_10_3390_ijms231810913 crossref_primary_10_3390_genes15040444 crossref_primary_10_1016_j_ympev_2024_108089 crossref_primary_10_1094_MPMI_06_20_0145_R crossref_primary_10_1016_j_actatropica_2019_105196 crossref_primary_10_7554_eLife_81302 crossref_primary_10_1080_00318884_2021_1916859 crossref_primary_10_1099_mgen_0_001328 crossref_primary_10_3389_fmars_2024_1386686 crossref_primary_10_1093_bioinformatics_btac396 crossref_primary_10_1080_19768354_2024_2302529 crossref_primary_10_1093_sysbio_syad031 crossref_primary_10_1080_23802359_2020_1793226 crossref_primary_10_3390_v14040774 crossref_primary_10_3389_fmicb_2023_1276241 crossref_primary_10_1002_ece3_11276 crossref_primary_10_1111_jse_12950 crossref_primary_10_1093_sysbio_syad036 crossref_primary_10_7554_eLife_84815 crossref_primary_10_1094_PDIS_06_22_1318_SC crossref_primary_10_1186_s12915_022_01436_7 crossref_primary_10_1186_s12920_023_01695_5 crossref_primary_10_1016_j_ympev_2024_108091 crossref_primary_10_3389_fcimb_2022_1035145 crossref_primary_10_1038_s41598_022_26188_w crossref_primary_10_1111_zsc_12678 crossref_primary_10_1038_s41598_021_94997_6 crossref_primary_10_3897_zookeys_1131_91017 crossref_primary_10_1002_bies_202000343 crossref_primary_10_1016_j_chom_2024_10_016 crossref_primary_10_1038_s41467_023_38567_6 crossref_primary_10_1016_j_ympev_2025_108326 crossref_primary_10_1128_spectrum_04738_22 crossref_primary_10_1038_s42003_024_07189_z crossref_primary_10_1186_s12870_024_05665_6 crossref_primary_10_3389_fmicb_2023_1219261 crossref_primary_10_1080_23802359_2022_2080026 crossref_primary_10_1186_s12915_021_01120_2 crossref_primary_10_7554_eLife_89277 crossref_primary_10_1002_ece3_70452 crossref_primary_10_1371_journal_pcbi_1011871 crossref_primary_10_1099_mgen_0_000490 crossref_primary_10_1111_jfb_14920 crossref_primary_10_1186_s12862_020_01733_1 crossref_primary_10_1002_csc2_21413 crossref_primary_10_1111_jeu_12973 crossref_primary_10_1038_s41467_023_43740_y crossref_primary_10_1111_ibi_13177 crossref_primary_10_1007_s00203_024_03937_1 crossref_primary_10_1016_j_actatropica_2020_105730 crossref_primary_10_1099_mgen_0_000418 crossref_primary_10_11646_zootaxa_5538_1_1 crossref_primary_10_1093_sysbio_syad059 crossref_primary_10_1099_mgen_0_000893 crossref_primary_10_1093_sysbio_syad052 crossref_primary_10_1099_ijsem_0_006212 crossref_primary_10_1016_j_syapm_2024_126538 crossref_primary_10_1093_jhered_esac038 crossref_primary_10_1093_jhered_esac036 crossref_primary_10_1111_pbi_14281 crossref_primary_10_1186_s12870_025_06296_1 crossref_primary_10_1371_journal_pone_0244872 crossref_primary_10_1186_s12985_022_01790_6 crossref_primary_10_1371_journal_pone_0318091 crossref_primary_10_3390_genes12081190 crossref_primary_10_3390_ijms25042074 crossref_primary_10_3390_jof8090892 crossref_primary_10_1007_s11557_022_01799_9 crossref_primary_10_1111_1755_0998_13453 crossref_primary_10_1007_s13127_020_00470_z crossref_primary_10_1094_MPMI_01_23_0009_LE crossref_primary_10_1186_s12864_021_08274_x crossref_primary_10_3897_mycokeys_68_52092 crossref_primary_10_1111_ecog_07786 crossref_primary_10_3103_S0891416822030089 crossref_primary_10_1093_sysbio_syad040 crossref_primary_10_1600_036364424X17323182682762 crossref_primary_10_1038_s41586_023_06062_z crossref_primary_10_1111_zsc_12664 crossref_primary_10_1016_j_ympev_2024_108041 crossref_primary_10_1016_j_ympev_2024_108047 crossref_primary_10_1016_j_scitotenv_2024_174612 crossref_primary_10_1111_1462_2920_15752 crossref_primary_10_1111_itor_13164 crossref_primary_10_4049_jimmunol_2300851 crossref_primary_10_1080_23802359_2021_1967217 crossref_primary_10_1093_sysbio_syad078 crossref_primary_10_1007_s00122_024_04746_2 crossref_primary_10_1111_aen_12582 crossref_primary_10_1093_gigascience_giad005 crossref_primary_10_1016_j_ejop_2022_125905 crossref_primary_10_1016_j_cell_2021_09_003 crossref_primary_10_3390_agronomy13020332 crossref_primary_10_1099_mgen_0_000446 crossref_primary_10_5433_1679_0359_2020v41n6Supl2p3323 crossref_primary_10_1099_mgen_0_000441 crossref_primary_10_1016_j_cub_2022_03_056 crossref_primary_10_1111_1755_0998_13434 crossref_primary_10_3390_insects16040335 crossref_primary_10_11646_zootaxa_5583_1_6 crossref_primary_10_1128_AEM_00122_21 crossref_primary_10_1186_s42523_023_00248_6 crossref_primary_10_1111_fwb_14194 crossref_primary_10_1016_j_ejop_2024_126107 crossref_primary_10_1155_2023_5479917 crossref_primary_10_1094_PHYTOFR_08_21_0055_A crossref_primary_10_24072_pcjournal_445 crossref_primary_10_3389_fmicb_2021_669618 crossref_primary_10_1016_j_ympev_2024_108068 crossref_primary_10_1038_s41598_022_26514_2 crossref_primary_10_1111_zsc_12648 crossref_primary_10_1126_science_adn2094 crossref_primary_10_3389_fmicb_2022_943707 crossref_primary_10_1093_molbev_msaa141 crossref_primary_10_1016_j_crpvbd_2023_100154 crossref_primary_10_1111_ppa_13785 crossref_primary_10_1016_j_aquaculture_2024_741737 crossref_primary_10_7554_eLife_66405 crossref_primary_10_1080_23802359_2024_2403407 crossref_primary_10_3389_fmicb_2023_1092216 crossref_primary_10_1098_rsos_221503 crossref_primary_10_3390_d13110517 crossref_primary_10_3389_fpls_2021_651805 crossref_primary_10_1016_j_bej_2022_108780 crossref_primary_10_1111_1755_0998_13809 crossref_primary_10_1016_j_celrep_2020_107918 crossref_primary_10_1038_s41598_022_23542_w crossref_primary_10_1007_s00705_022_05399_6 crossref_primary_10_3390_jof9010110 crossref_primary_10_1007_s10142_023_01262_2 crossref_primary_10_3390_microorganisms13010206 crossref_primary_10_1093_plcell_koab013 crossref_primary_10_1080_00318884_2021_1892399 crossref_primary_10_1128_jvi_00191_24 crossref_primary_10_3897_zookeys_1089_77273 crossref_primary_10_1080_00318884_2021_1946643 crossref_primary_10_1099_ijsem_0_006240 crossref_primary_10_1098_rspb_2019_1812 crossref_primary_10_1186_s41182_023_00500_4 crossref_primary_10_1007_s10750_021_04611_z crossref_primary_10_1186_s13059_023_03133_2 crossref_primary_10_1111_nph_17858 crossref_primary_10_1111_jpy_13533 crossref_primary_10_15298_arthsel_30_1_05 crossref_primary_10_3390_biology10111092 crossref_primary_10_1093_zoolinnean_zlac113 crossref_primary_10_1016_j_chom_2022_11_013 crossref_primary_10_1038_s41598_023_48079_4 crossref_primary_10_1186_s12711_024_00904_8 crossref_primary_10_3389_fmicb_2022_1086296 crossref_primary_10_3389_fpls_2021_765719 crossref_primary_10_1007_s10096_023_04629_2 crossref_primary_10_1007_s00705_020_04769_2 crossref_primary_10_1016_j_actatropica_2024_107424 crossref_primary_10_1016_j_ympev_2020_106997 crossref_primary_10_3390_genes14020257 crossref_primary_10_3389_fevo_2023_1093321 crossref_primary_10_3390_v13061063 crossref_primary_10_1016_j_jprot_2020_104045 crossref_primary_10_3389_fpls_2021_716750 crossref_primary_10_1007_s00705_022_05560_1 crossref_primary_10_3390_biom13060962 crossref_primary_10_1111_nph_16980 crossref_primary_10_3389_fmicb_2021_700698 crossref_primary_10_1093_molbev_msab007 crossref_primary_10_1098_rstb_2021_0279 crossref_primary_10_1111_mec_17466 crossref_primary_10_1093_gbe_evaa027 crossref_primary_10_1098_rsob_200402 crossref_primary_10_3389_fmars_2022_1049138 crossref_primary_10_1093_plphys_kiad401 crossref_primary_10_1099_ijsem_0_004084 crossref_primary_10_1111_tbed_14737 crossref_primary_10_2147_IDR_S319439 crossref_primary_10_1093_hr_uhad217 crossref_primary_10_1186_s13756_020_00861_z crossref_primary_10_3389_fgene_2023_1103969 crossref_primary_10_1128_spectrum_02827_23 crossref_primary_10_1186_s12864_023_09437_8 crossref_primary_10_1206_0003_0090_454_1_1 crossref_primary_10_1093_ornithology_ukad025 crossref_primary_10_1007_s12583_022_1609_1 crossref_primary_10_1002_ece3_9842 crossref_primary_10_1111_mec_17457 crossref_primary_10_1186_s12870_023_04623_y crossref_primary_10_7554_eLife_86617 crossref_primary_10_1186_s13071_024_06402_6 crossref_primary_10_7554_eLife_86617_3 crossref_primary_10_1080_23802359_2022_2080011 crossref_primary_10_1038_s41467_023_40544_y crossref_primary_10_1111_mec_17451 crossref_primary_10_1007_s00572_023_01130_8 crossref_primary_10_3389_fmicb_2021_733159 crossref_primary_10_1016_j_isci_2024_109072 crossref_primary_10_1016_j_ympev_2025_108310 crossref_primary_10_1093_molbev_msaa191 crossref_primary_10_3390_pathogens11091025 crossref_primary_10_1007_s11262_020_01803_y crossref_primary_10_1094_MPMI_06_24_0068_R crossref_primary_10_7554_eLife_72460 crossref_primary_10_3389_fevo_2021_630207 crossref_primary_10_1093_molbev_msad206 crossref_primary_10_1186_s12864_022_08819_8 crossref_primary_10_1111_mec_17446 crossref_primary_10_3390_v11121129 crossref_primary_10_1002_anie_202405120 crossref_primary_10_1186_s12915_024_01844_x crossref_primary_10_3390_plants12122231 crossref_primary_10_1016_j_cell_2024_07_029 crossref_primary_10_1128_mSystems_00934_20 crossref_primary_10_3390_jmse11122307 crossref_primary_10_1016_j_jbc_2023_105410 crossref_primary_10_1111_jeu_13003 crossref_primary_10_1016_j_jcv_2024_105691 crossref_primary_10_1111_btp_13323 crossref_primary_10_1093_molbev_msad236 crossref_primary_10_1128_spectrum_05184_22 crossref_primary_10_1038_s42003_024_05998_w crossref_primary_10_1186_s12864_020_07232_3 crossref_primary_10_1002_ece3_70400 crossref_primary_10_1002_lno_11956 crossref_primary_10_35535_pfsyst_2024_0001 crossref_primary_10_1038_s41598_021_87495_2 crossref_primary_10_1038_s41467_023_38902_x crossref_primary_10_3897_BDJ_12_e125914 crossref_primary_10_1016_j_cub_2024_08_047 crossref_primary_10_1093_molbev_msaa198 crossref_primary_10_3390_md22010003 crossref_primary_10_1093_molbev_msad227 crossref_primary_10_3354_dao03417 crossref_primary_10_1093_molbev_msad221 crossref_primary_10_3390_insects15050303 crossref_primary_10_1016_j_isci_2023_106982 crossref_primary_10_1371_journal_pone_0235066 crossref_primary_10_1080_23802359_2024_2403413 crossref_primary_10_35535_pfsyst_2024_0007 crossref_primary_10_1111_1758_2229_13159 crossref_primary_10_1093_bib_bbac030 crossref_primary_10_1292_jvms_21_0285 crossref_primary_10_1007_s00284_024_03696_8 crossref_primary_10_1080_12298093_2023_2219049 crossref_primary_10_1186_s12870_022_03707_5 crossref_primary_10_1002_aps3_11295 crossref_primary_10_1098_rstb_2021_0244 crossref_primary_10_3389_fpls_2023_1240342 crossref_primary_10_1101_gr_278203_123 crossref_primary_10_1016_j_funeco_2024_101398 crossref_primary_10_11646_zootaxa_5424_3_3 crossref_primary_10_1186_s12864_023_09877_2 crossref_primary_10_1128_msystems_01188_23 crossref_primary_10_1093_botlinnean_boab047 crossref_primary_10_1371_journal_pone_0275908 crossref_primary_10_1600_036364421X16128061189594 crossref_primary_10_3389_fmicb_2024_1474957 crossref_primary_10_1111_jfb_15684 crossref_primary_10_1007_s42729_021_00707_6 crossref_primary_10_3389_fmicb_2023_1240993 crossref_primary_10_3390_insects15060394 crossref_primary_10_1016_j_actatropica_2025_107561 crossref_primary_10_1371_journal_pone_0294670 crossref_primary_10_3390_ani14010047 crossref_primary_10_1093_g3journal_jkab136 crossref_primary_10_1155_2023_9995433 crossref_primary_10_1270_jsbbs_23064 crossref_primary_10_1038_s41467_024_45836_5 crossref_primary_10_47371_mycosci_2024_08_002 crossref_primary_10_1080_21505594_2022_2082139 crossref_primary_10_1371_journal_ppat_1009586 crossref_primary_10_1111_eva_13149 crossref_primary_10_1093_zoolinnean_zlad154 crossref_primary_10_3390_pathogens13100844 crossref_primary_10_1111_1749_4877_12819 crossref_primary_10_3390_v14020227 crossref_primary_10_1111_cla_12493 crossref_primary_10_1128_mra_01355_22 crossref_primary_10_1007_s13205_021_02677_z crossref_primary_10_1128_spectrum_02504_23 crossref_primary_10_1007_s10750_023_05451_9 crossref_primary_10_1371_journal_ppat_1011897 crossref_primary_10_1093_molbev_msad155 crossref_primary_10_1186_s12985_024_02581_x crossref_primary_10_1186_s12864_025_11432_0 crossref_primary_10_3390_jof8050449 crossref_primary_10_3389_fevo_2022_1044565 crossref_primary_10_5852_ejt_2023_864_2101 crossref_primary_10_1016_j_tree_2023_11_002 crossref_primary_10_1093_molbev_msad161 crossref_primary_10_1017_S0022149X19000725 crossref_primary_10_1134_S0032945223030074 crossref_primary_10_1128_MRA_00855_23 crossref_primary_10_1111_nph_17551 crossref_primary_10_3390_genes13010061 crossref_primary_10_1007_s00606_021_01797_6 crossref_primary_10_1016_j_rsma_2022_102599 crossref_primary_10_1128_spectrum_02207_23 crossref_primary_10_3897_zookeys_1089_78182 crossref_primary_10_1007_s10482_024_02049_6 crossref_primary_10_1111_nph_18885 crossref_primary_10_1186_s12870_020_02801_w crossref_primary_10_1038_s41598_022_14100_5 crossref_primary_10_1128_msystems_00757_23 crossref_primary_10_1002_aqc_4247 crossref_primary_10_1128_msphere_00441_23 crossref_primary_10_3389_fmicb_2022_960748 crossref_primary_10_3389_fpls_2024_1340056 crossref_primary_10_1111_jpy_13391 crossref_primary_10_1093_ve_veab003 crossref_primary_10_1111_jpy_13392 crossref_primary_10_1093_molbev_msad150 crossref_primary_10_1098_rspb_2021_2362 crossref_primary_10_3390_jof7030191 crossref_primary_10_1002_tpg2_20556 crossref_primary_10_1371_journal_pone_0315000 crossref_primary_10_1093_zoolinnean_zlad108 crossref_primary_10_3389_fmicb_2023_1292150 crossref_primary_10_1038_s44298_024_00037_1 crossref_primary_10_1371_journal_ppat_1008224 crossref_primary_10_1073_pnas_2109326119 crossref_primary_10_1093_molbev_msae026 crossref_primary_10_1038_s41598_024_65726_6 crossref_primary_10_3389_fpls_2021_749895 crossref_primary_10_7717_peerj_9483 crossref_primary_10_1002_vms3_851 crossref_primary_10_1007_s10493_022_00725_8 crossref_primary_10_1099_ijsem_0_004948 crossref_primary_10_2807_1560_7917_ES_2022_27_44_2101144 crossref_primary_10_2139_ssrn_4063485 crossref_primary_10_1016_j_aquabot_2025_103867 crossref_primary_10_1128_msystems_01518_21 crossref_primary_10_1093_sysbio_syaa101 crossref_primary_10_7554_eLife_85120 crossref_primary_10_1038_s41588_023_01368_0 crossref_primary_10_1002_tpg2_20501 crossref_primary_10_1038_s41598_023_40746_w crossref_primary_10_1093_molbev_msad165 crossref_primary_10_1128_spectrum_00700_22 crossref_primary_10_1093_molbev_msad166 crossref_primary_10_1038_s41467_023_36403_5 crossref_primary_10_1038_s41467_024_54418_4 crossref_primary_10_1111_eva_13589 crossref_primary_10_3390_jmse12050847 crossref_primary_10_3897_zookeys_1040_62309 crossref_primary_10_3390_pathogens13100884 crossref_primary_10_1016_j_jgar_2024_01_014 crossref_primary_10_3390_v16030367 crossref_primary_10_1007_s13127_022_00554_y crossref_primary_10_1016_j_japb_2024_04_007 crossref_primary_10_3390_ijms26010323 crossref_primary_10_1128_jcm_01122_24 crossref_primary_10_1016_j_jip_2023_107948 crossref_primary_10_1007_s00606_024_01929_8 crossref_primary_10_1186_s12866_020_01884_7 crossref_primary_10_3390_environments10090153 crossref_primary_10_11646_zootaxa_5476_1_23 crossref_primary_10_3897_zookeys_1215_116624 crossref_primary_10_1038_s41467_024_48236_x crossref_primary_10_1098_rsob_240170 crossref_primary_10_1111_jpy_13335 crossref_primary_10_1002_pro_4551 crossref_primary_10_3390_microorganisms8101502 crossref_primary_10_1111_1462_2920_16047 crossref_primary_10_2147_IDR_S395920 crossref_primary_10_1016_j_ijpara_2022_03_005 crossref_primary_10_1098_rsob_240158 crossref_primary_10_7717_peerj_14047 crossref_primary_10_1080_23802359_2022_2160671 crossref_primary_10_1600_036364423X16847773873071 crossref_primary_10_4289_0013_8797_126_1_21 crossref_primary_10_3897_asp_81_e104426 crossref_primary_10_1038_s42003_025_07602_1 crossref_primary_10_1002_tax_13098 crossref_primary_10_1093_molbev_msae054 crossref_primary_10_1186_s13068_020_01731_x crossref_primary_10_1128_spectrum_02049_23 crossref_primary_10_1093_molbev_msz189 crossref_primary_10_1111_eva_13565 crossref_primary_10_1098_rsob_240141 crossref_primary_10_3390_life13091937 crossref_primary_10_48130_forres_0024_0016 crossref_primary_10_1007_s00606_024_01907_0 crossref_primary_10_1002_advs_202103388 crossref_primary_10_1371_journal_pbio_3002436 crossref_primary_10_3389_fcimb_2021_794529 crossref_primary_10_11646_zootaxa_5501_2_3 crossref_primary_10_1139_gen_2020_0072 crossref_primary_10_1371_journal_pone_0289280 crossref_primary_10_1080_23802359_2023_2215350 crossref_primary_10_1080_23802359_2020_1775509 crossref_primary_10_1093_botlinnean_boab086 crossref_primary_10_1093_molbev_msad190 crossref_primary_10_1186_s43008_024_00144_x crossref_primary_10_1073_pnas_2119671119 crossref_primary_10_1038_s41586_019_1916_6 crossref_primary_10_1016_j_jsb_2020_107594 crossref_primary_10_1016_j_nmni_2024_101506 crossref_primary_10_1002_ajb2_1636 crossref_primary_10_1016_j_actatropica_2023_106988 crossref_primary_10_1038_s41467_020_19153_6 crossref_primary_10_1007_s10265_021_01301_8 crossref_primary_10_1111_mec_15631 crossref_primary_10_1016_j_tig_2020_08_012 crossref_primary_10_3389_fmars_2023_1136602 crossref_primary_10_1093_zoolinnean_zlae080 crossref_primary_10_1126_sciadv_aay3423 crossref_primary_10_3389_fcell_2022_828947 crossref_primary_10_1128_mBio_01451_21 crossref_primary_10_3390_d15030398 crossref_primary_10_3389_fncir_2023_1172464 crossref_primary_10_3390_microorganisms8101569 crossref_primary_10_1016_j_ympev_2023_107893 crossref_primary_10_1007_s11103_023_01366_0 crossref_primary_10_1002_ajb2_1626 crossref_primary_10_1093_molbev_msae059 crossref_primary_10_1007_s13225_024_00541_y crossref_primary_10_1007_s41826_024_00088_6 crossref_primary_10_1098_rsbl_2023_0385 crossref_primary_10_1093_sysbio_syae052 crossref_primary_10_3389_fmolb_2022_856212 crossref_primary_10_47371_mycosci_2022_11_002 crossref_primary_10_1128_msphere_00059_25 crossref_primary_10_1007_s00705_022_05400_2 crossref_primary_10_1038_s41598_022_26970_w crossref_primary_10_1002_ps_7789 crossref_primary_10_1038_s41576_020_0233_0 crossref_primary_10_1002_ps_8631 crossref_primary_10_1111_1462_2920_15554 crossref_primary_10_1007_s00438_025_02239_5 crossref_primary_10_1038_s41396_023_01416_x crossref_primary_10_1111_nph_19341 crossref_primary_10_1371_journal_pone_0293715 crossref_primary_10_3897_evolsyst_6_76382 crossref_primary_10_1038_s41467_024_50143_0 crossref_primary_10_1264_jsme2_ME24041 crossref_primary_10_1038_s41598_022_17835_3 crossref_primary_10_1093_gbe_evae186 crossref_primary_10_1126_sciadv_abq0304 crossref_primary_10_1002_tax_12648 crossref_primary_10_1038_s42003_024_06152_2 crossref_primary_10_1093_gbe_evaf032 crossref_primary_10_1093_molbev_msae093 crossref_primary_10_1128_spectrum_00890_23 crossref_primary_10_1371_journal_pone_0310186 crossref_primary_10_1038_s41598_023_47014_x crossref_primary_10_11646_zootaxa_5277_1_7 crossref_primary_10_1080_23802359_2022_2060143 crossref_primary_10_1016_j_isci_2023_108445 crossref_primary_10_1016_j_ppees_2023_125760 crossref_primary_10_3201_eid3001_221588 crossref_primary_10_1111_1755_0998_13478 crossref_primary_10_1038_s41467_020_20005_6 crossref_primary_10_3390_insects12070652 crossref_primary_10_1111_jfb_14767 crossref_primary_10_1128_mbio_00434_23 crossref_primary_10_1080_23802359_2021_2005493 crossref_primary_10_1099_mgen_0_001185 crossref_primary_10_1038_s41586_024_07323_1 crossref_primary_10_3390_biology12030418 crossref_primary_10_1002_jeq2_20081 crossref_primary_10_1038_s41467_021_22073_8 crossref_primary_10_1093_ve_veae116 crossref_primary_10_3389_fmicb_2021_803896 crossref_primary_10_1093_molbev_msae088 crossref_primary_10_1080_23802359_2024_2438272 crossref_primary_10_1002_aps3_11604 crossref_primary_10_3390_plants10010047 crossref_primary_10_1016_j_xgen_2024_100593 crossref_primary_10_1093_femsmc_xtad005 crossref_primary_10_1007_s00285_021_01685_0 crossref_primary_10_1021_acs_jafc_4c04830 crossref_primary_10_3390_insects15030149 crossref_primary_10_1016_j_ygeno_2022_110382 crossref_primary_10_1016_j_diagmicrobio_2025_116792 crossref_primary_10_1186_s12864_021_07489_2 crossref_primary_10_1099_ijsem_0_006726 crossref_primary_10_1080_09670262_2021_1987527 crossref_primary_10_7717_peerj_9884 crossref_primary_10_1073_pnas_2103960119 crossref_primary_10_1002_pld3_575 crossref_primary_10_1016_j_ympev_2023_107867 crossref_primary_10_1093_aob_mcae179 crossref_primary_10_1038_s41586_024_08515_5 crossref_primary_10_1021_acs_est_2c05346 crossref_primary_10_1128_spectrum_04740_22 crossref_primary_10_1016_j_ympev_2022_107585 crossref_primary_10_1016_j_biteb_2022_101098 crossref_primary_10_1126_science_aaw8977 crossref_primary_10_1093_ve_veab030 crossref_primary_10_3389_fmicb_2020_01329 crossref_primary_10_5507_fot_2021_012 crossref_primary_10_1128_mBio_03138_19 crossref_primary_10_3390_jof10010015 crossref_primary_10_3390_jof8050476 crossref_primary_10_1099_ijsem_0_005876 crossref_primary_10_1111_ens_12465 crossref_primary_10_1093_gbe_evaf020 crossref_primary_10_1093_aob_mcae161 crossref_primary_10_3390_genes14010075 crossref_primary_10_1016_j_cub_2022_08_013 crossref_primary_10_1016_j_xgen_2024_100586 crossref_primary_10_1016_j_ympev_2022_107561 crossref_primary_10_1038_s41477_024_01717_9 crossref_primary_10_3389_fmicb_2023_1127948 crossref_primary_10_3389_fmicb_2021_647565 crossref_primary_10_1007_s42995_023_00177_y crossref_primary_10_1016_j_molcel_2024_01_027 crossref_primary_10_1016_j_protis_2024_126023 crossref_primary_10_5852_ejt_2022_819_1775 crossref_primary_10_1094_PDIS_10_22_2324_RE crossref_primary_10_1186_s12866_024_03243_2 crossref_primary_10_1007_s11103_024_01539_5 crossref_primary_10_1128_MRA_00628_20 crossref_primary_10_1007_s11756_021_00913_8 crossref_primary_10_1016_j_toxicon_2023_107053 crossref_primary_10_3201_eid2908_221818 crossref_primary_10_1016_j_ympev_2023_107885 crossref_primary_10_3389_fpls_2023_1137077 crossref_primary_10_1016_j_ympev_2023_107884 crossref_primary_10_2139_ssrn_4151519 crossref_primary_10_3389_fpls_2021_741063 crossref_primary_10_1139_cjb_2020_0045 crossref_primary_10_3897_zookeys_1206_123364 crossref_primary_10_1016_j_ympev_2021_107270 crossref_primary_10_1093_pcp_pcaf022 crossref_primary_10_1111_mpp_13169 crossref_primary_10_1088_1755_1315_937_2_022002 crossref_primary_10_1016_j_protis_2024_126034 crossref_primary_10_3390_plants9121798 crossref_primary_10_1093_gbe_evaf002 crossref_primary_10_1016_j_jbc_2022_102782 crossref_primary_10_1093_gbe_evae151 crossref_primary_10_3390_foods13142216 crossref_primary_10_1093_isd_ixab024 crossref_primary_10_1186_s43141_023_00550_5 crossref_primary_10_1002_aps3_11611 crossref_primary_10_1007_s11557_021_01724_6 crossref_primary_10_1016_j_protis_2024_126036 crossref_primary_10_1016_j_ympev_2023_107872 crossref_primary_10_1111_fwb_70004 crossref_primary_10_1007_s10126_020_10001_8 crossref_primary_10_1038_s41598_024_51431_x crossref_primary_10_3389_fmicb_2023_1166615 crossref_primary_10_3389_fpls_2020_573670 crossref_primary_10_1111_1755_0998_13523 crossref_primary_10_3389_fpls_2024_1371237 crossref_primary_10_3390_ani15020174 crossref_primary_10_1016_j_ympev_2024_108194 crossref_primary_10_32604_phyton_2022_018462 crossref_primary_10_1016_j_ympev_2023_107822 crossref_primary_10_1073_pnas_2309994121 crossref_primary_10_1016_j_ympev_2021_107266 crossref_primary_10_3390_ijms25073855 crossref_primary_10_3897_zse_101_133434 crossref_primary_10_1007_s10228_023_00919_z crossref_primary_10_1007_s11262_024_02085_4 crossref_primary_10_1099_ijsem_0_005427 crossref_primary_10_1093_sysbio_syaa099 crossref_primary_10_1128_aem_00570_23 crossref_primary_10_1128_JVI_00387_21 crossref_primary_10_1111_zsc_12582 crossref_primary_10_1128_spectrum_00524_23 crossref_primary_10_1186_s13071_022_05301_y crossref_primary_10_2142_biophysico_bppb_v19_0011 crossref_primary_10_1111_zsc_12586 crossref_primary_10_1093_nargab_lqae064 crossref_primary_10_1111_jzs_12514 crossref_primary_10_3390_v13050907 crossref_primary_10_1016_j_ympev_2022_107559 crossref_primary_10_1098_rspb_2024_2069 crossref_primary_10_1007_s13127_023_00633_8 crossref_primary_10_1016_j_protis_2024_126015 crossref_primary_10_3897_BDJ_10_e81533 crossref_primary_10_1016_j_ympev_2021_107257 crossref_primary_10_1186_s12915_023_01541_1 crossref_primary_10_7554_eLife_93629 crossref_primary_10_1089_cmb_2021_0585 crossref_primary_10_1186_s12862_024_02322_2 crossref_primary_10_1016_j_plaphy_2024_109460 crossref_primary_10_1371_journal_pone_0237177 crossref_primary_10_1016_j_ibmb_2022_103830 crossref_primary_10_1007_s12600_024_01208_9 crossref_primary_10_3390_d14121133 crossref_primary_10_1007_s00606_022_01820_4 crossref_primary_10_1016_j_jhazmat_2024_136627 crossref_primary_10_3389_fmicb_2024_1396686 crossref_primary_10_1016_j_jenvrad_2021_106709 crossref_primary_10_1186_s12870_023_04267_y crossref_primary_10_1111_zsc_12557 crossref_primary_10_1016_j_ympev_2022_107524 crossref_primary_10_1016_j_fbio_2024_105268 crossref_primary_10_1111_1755_0998_13991 crossref_primary_10_1080_00275514_2021_1908009 crossref_primary_10_1186_s40168_022_01238_7 crossref_primary_10_1016_j_actatropica_2021_105941 crossref_primary_10_1073_pnas_2007056117 crossref_primary_10_3390_agronomy14071350 crossref_primary_10_3390_plants12193350 crossref_primary_10_1016_j_celrep_2022_111808 crossref_primary_10_1007_s11557_023_01895_4 crossref_primary_10_1093_gbe_evab087 crossref_primary_10_1016_j_ympev_2023_107837 crossref_primary_10_1007_s00299_024_03329_1 crossref_primary_10_1002_ps_7723 crossref_primary_10_1016_j_ympev_2023_107834 crossref_primary_10_3390_genes13091519 crossref_primary_10_1111_jbi_14087 crossref_primary_10_1016_j_ympev_2021_107233 crossref_primary_10_3389_fmicb_2023_1154664 crossref_primary_10_7717_peerj_7754 crossref_primary_10_1111_jav_02559 crossref_primary_10_1155_2022_2229147 crossref_primary_10_1073_pnas_2006750117 crossref_primary_10_1111_nph_17941 crossref_primary_10_1186_s12870_024_05300_4 crossref_primary_10_3390_ani14192867 crossref_primary_10_1080_21501203_2024_2443216 crossref_primary_10_1099_ijsem_0_006335 crossref_primary_10_3897_mycokeys_115_138252 crossref_primary_10_1111_zsc_12536 crossref_primary_10_1128_spectrum_03495_22 crossref_primary_10_1038_s41477_025_01942_w crossref_primary_10_1128_mra_00290_22 crossref_primary_10_1093_nar_gkac1076 crossref_primary_10_3390_ijms241310755 crossref_primary_10_3389_fpls_2022_899252 crossref_primary_10_3390_d14050375 crossref_primary_10_1007_s12526_021_01228_2 crossref_primary_10_1080_23802359_2021_1915718 crossref_primary_10_47371_mycosci_2022_07_002 crossref_primary_10_1002_ajb2_16138 crossref_primary_10_1186_s12915_022_01297_0 crossref_primary_10_1186_s13071_019_3750_y crossref_primary_10_1099_acmi_0_000252 crossref_primary_10_1002_jmv_29641 crossref_primary_10_1099_ijsem_0_006326 crossref_primary_10_1016_j_ympev_2022_107518 crossref_primary_10_1016_j_ympev_2022_107519 crossref_primary_10_1093_gbe_evab067 crossref_primary_10_1016_j_meegid_2022_105242 crossref_primary_10_1016_j_ympev_2022_107514 crossref_primary_10_1080_00222933_2024_2354483 crossref_primary_10_1186_s40694_021_00117_4 crossref_primary_10_1016_j_ympev_2022_107510 crossref_primary_10_1016_j_ympev_2024_108166 crossref_primary_10_3390_d15101080 crossref_primary_10_1007_s00436_024_08278_y crossref_primary_10_1155_2022_5364094 crossref_primary_10_1016_j_isci_2023_106210 crossref_primary_10_1111_jipb_13638 crossref_primary_10_1111_syen_12618 crossref_primary_10_3897_alpento_7_106089 crossref_primary_10_1016_j_chom_2025_02_016 crossref_primary_10_1080_00318884_2024_2390142 crossref_primary_10_1093_bioinformatics_btae255 crossref_primary_10_3389_fevo_2022_1065947 crossref_primary_10_7554_eLife_92362 crossref_primary_10_1093_bioinformatics_btae254 crossref_primary_10_3354_esr01152 crossref_primary_10_1007_s42991_024_00423_5 crossref_primary_10_1099_mgen_0_000791 crossref_primary_10_3389_fpls_2021_667060 crossref_primary_10_1007_s11557_023_01882_9 crossref_primary_10_1093_gbe_evad213 crossref_primary_10_3389_fgene_2021_790850 crossref_primary_10_1038_s41559_022_01801_3 crossref_primary_10_1101_gr_279418_124 crossref_primary_10_1016_j_ympev_2023_107803 crossref_primary_10_3389_fmicb_2023_1244533 crossref_primary_10_1128_msystems_00315_23 crossref_primary_10_1073_pnas_2025337118 crossref_primary_10_1371_journal_pone_0273273 crossref_primary_10_1093_g3journal_jkae189 crossref_primary_10_1038_s41467_023_41137_5 crossref_primary_10_3390_jof9010099 crossref_primary_10_1038_s41598_023_35171_y crossref_primary_10_2217_fvl_2021_0056 crossref_primary_10_1038_s41598_021_86820_z crossref_primary_10_1111_jipb_13625 crossref_primary_10_1093_sysbio_syae032 crossref_primary_10_1039_D1NP00006C crossref_primary_10_1289_EHP7729 crossref_primary_10_1007_s41348_024_01055_0 crossref_primary_10_1128_spectrum_02463_22 crossref_primary_10_3389_fmicb_2020_01869 crossref_primary_10_1126_science_abq6453 crossref_primary_10_1128_mra_00846_24 crossref_primary_10_3390_insects12121062 crossref_primary_10_1093_sysbio_syae030 crossref_primary_10_1093_sysbio_syae031 crossref_primary_10_1007_s11557_021_01671_2 crossref_primary_10_1186_s12870_022_03898_x crossref_primary_10_3390_ijms23084112 crossref_primary_10_3390_jof9050517 crossref_primary_10_1109_TCBB_2022_3170386 crossref_primary_10_1128_jvi_01784_23 crossref_primary_10_3390_biom12081107 crossref_primary_10_1093_zoolinnean_zlaa037 crossref_primary_10_1038_s41588_023_01516_6 crossref_primary_10_3389_fmicb_2022_809804 crossref_primary_10_1007_s12041_024_01485_7 crossref_primary_10_1093_femsre_fuae006 crossref_primary_10_1099_ijsem_0_006376 crossref_primary_10_1016_j_foodres_2025_116211 crossref_primary_10_1080_07060661_2023_2195843 crossref_primary_10_1016_j_ympev_2024_108111 crossref_primary_10_1007_s00239_019_09903_6 crossref_primary_10_1111_tpj_16131 crossref_primary_10_1111_ppa_13890 crossref_primary_10_1007_s00468_024_02519_4 crossref_primary_10_1093_molbev_msaa015 crossref_primary_10_1007_s00436_021_07213_9 crossref_primary_10_1016_j_pld_2024_12_005 crossref_primary_10_1099_mgen_0_000741 crossref_primary_10_3390_ijms24043606 crossref_primary_10_1099_ijsem_0_005037 crossref_primary_10_1639_0007_2745_124_3_403 crossref_primary_10_3389_fmicb_2023_1162657 crossref_primary_10_1094_MPMI_09_23_0129_R crossref_primary_10_3201_eid3003_231160 crossref_primary_10_1016_j_xplc_2024_101134 crossref_primary_10_1038_s41467_023_43345_5 crossref_primary_10_1038_s41396_023_01451_8 crossref_primary_10_1128_spectrum_00516_24 crossref_primary_10_3389_fmicb_2021_666689 crossref_primary_10_1016_j_coviro_2021_09_009 crossref_primary_10_1016_j_cub_2021_04_027 crossref_primary_10_3390_plants11223163 crossref_primary_10_3389_fpls_2024_1429494 crossref_primary_10_1080_14772000_2023_2218375 crossref_primary_10_3389_fpls_2023_1205683 crossref_primary_10_1038_s41467_021_27616_7 crossref_primary_10_1073_pnas_2212431119 crossref_primary_10_3390_a14050148 crossref_primary_10_1016_j_scib_2022_01_023 crossref_primary_10_1016_j_isci_2022_104588 crossref_primary_10_1016_j_jsb_2023_108031 crossref_primary_10_1038_s41598_024_54382_5 crossref_primary_10_3897_asp_79_e61499 crossref_primary_10_3114_sim_2024_107_04 crossref_primary_10_3389_fpls_2024_1487725 crossref_primary_10_3114_sim_2024_107_03 crossref_primary_10_1038_s41587_023_01868_8 crossref_primary_10_1111_jbi_14495 crossref_primary_10_3389_fmicb_2020_546150 crossref_primary_10_3390_f12101303 crossref_primary_10_1038_s41467_024_48036_3 crossref_primary_10_1038_s42003_023_05044_1 crossref_primary_10_1016_j_tvr_2024_200294 crossref_primary_10_1093_sysbio_syaa036 crossref_primary_10_1099_mgen_0_000765 crossref_primary_10_1186_s40168_021_01087_w crossref_primary_10_1071_BT20074 crossref_primary_10_1080_07060661_2023_2195825 crossref_primary_10_1093_molbev_msaa037 crossref_primary_10_1016_j_scienta_2025_113988 crossref_primary_10_1093_molbev_msab365 crossref_primary_10_1371_journal_pone_0230926 crossref_primary_10_3389_fevo_2020_00217 crossref_primary_10_1016_j_scib_2023_09_001 crossref_primary_10_1126_science_ado3290 crossref_primary_10_3390_genes13020384 crossref_primary_10_1109_ACCESS_2024_3464102 crossref_primary_10_3389_fpls_2022_844918 crossref_primary_10_7717_peerj_12691 crossref_primary_10_1016_j_indcrop_2025_120873 crossref_primary_10_1128_msystems_00684_19 crossref_primary_10_1128_spectrum_01909_21 crossref_primary_10_3389_fpls_2025_1568698 crossref_primary_10_1098_rsob_210325 crossref_primary_10_1186_s12915_025_02114_0 crossref_primary_10_3390_genes12010111 crossref_primary_10_1093_gbe_evab001 crossref_primary_10_1093_molbev_msaa040 crossref_primary_10_1111_jmp_12554 crossref_primary_10_1093_sysbio_syaa069 crossref_primary_10_3390_d13120647 crossref_primary_10_1128_aem_00594_22 crossref_primary_10_3390_genes13020337 crossref_primary_10_15298_invertzool_18_2_05 crossref_primary_10_3389_fgene_2022_1018632 crossref_primary_10_1080_23802359_2020_1870894 crossref_primary_10_1128_spectrum_03268_22 crossref_primary_10_3136_fstr_FSTR_D_23_00029 crossref_primary_10_1098_rsif_2023_0022 crossref_primary_10_1111_1755_0998_13964 crossref_primary_10_1186_s13015_023_00230_6 crossref_primary_10_1002_tax_12188 crossref_primary_10_3390_jdb8040027 crossref_primary_10_1099_ijsem_0_005088 crossref_primary_10_3390_plants10122560 crossref_primary_10_1093_bioadv_vbad124 crossref_primary_10_3390_biology13080608 crossref_primary_10_1038_s41586_022_05156_4 crossref_primary_10_3390_pathogens9010009 crossref_primary_10_1093_sysbio_syaa058 crossref_primary_10_7717_peerj_15787 crossref_primary_10_1080_23802359_2022_2152643 crossref_primary_10_1128_aem_00874_24 crossref_primary_10_1038_s41598_024_54987_w crossref_primary_10_1099_mgen_0_000705 crossref_primary_10_1093_gigascience_giaa022 crossref_primary_10_1111_ppa_13852 crossref_primary_10_1038_s41564_021_00933_9 crossref_primary_10_1021_acsomega_2c05257 crossref_primary_10_3390_v14061148 crossref_primary_10_1111_jse_13118 crossref_primary_10_1111_jse_13117 crossref_primary_10_11646_zootaxa_4748_1_10 crossref_primary_10_7717_peerj_12274 crossref_primary_10_1128_mra_00249_23 crossref_primary_10_1128_spectrum_01256_21 crossref_primary_10_1038_s41598_023_32336_7 crossref_primary_10_3390_v13112319 crossref_primary_10_1126_sciadv_adj6979 crossref_primary_10_1038_s41522_023_00381_9 crossref_primary_10_1002_cpz1_70016 crossref_primary_10_1007_s00239_024_10192_x crossref_primary_10_1111_eva_13615 crossref_primary_10_1071_IS22057 crossref_primary_10_1093_molbev_msac240 crossref_primary_10_1007_s10482_022_01779_9 crossref_primary_10_2807_1560_7917_ES_2020_25_16_1900457 crossref_primary_10_3390_genes11080876 crossref_primary_10_47371_mycosci_2024_10_008 crossref_primary_10_1002_yea_3853 crossref_primary_10_1016_j_csbj_2020_02_009 crossref_primary_10_1186_s13073_024_01289_5 crossref_primary_10_1016_j_ijbiomac_2025_139980 crossref_primary_10_1007_s10327_023_01129_1 crossref_primary_10_1206_4014_1 crossref_primary_10_1007_s10327_021_01042_5 crossref_primary_10_2108_zs230121 crossref_primary_10_1021_acs_biochem_2c00173 crossref_primary_10_1007_s12526_024_01483_z crossref_primary_10_1016_j_isci_2022_105478 crossref_primary_10_3390_genes13020350 crossref_primary_10_1093_sysbio_syaa081 crossref_primary_10_11646_zootaxa_5418_3_2 crossref_primary_10_1093_femsml_uqad033 crossref_primary_10_3390_plants13111444 crossref_primary_10_46234_ccdcw2025_067 crossref_primary_10_1038_s41564_024_01825_4 crossref_primary_10_1002_anie_202501425 crossref_primary_10_1099_mgen_0_000723 crossref_primary_10_1186_s12915_023_01692_1 crossref_primary_10_1038_s41598_020_77279_5 crossref_primary_10_3767_persoonia_2023_50_05 crossref_primary_10_1016_j_vaccine_2022_06_082 crossref_primary_10_1264_jsme2_ME21018 crossref_primary_10_3390_pathogens10091133 crossref_primary_10_1016_j_syapm_2025_126590 crossref_primary_10_1080_00275514_2024_2430174 crossref_primary_10_1264_jsme2_ME21011 crossref_primary_10_1111_evo_14470 crossref_primary_10_1099_jgv_0_001491 crossref_primary_10_1038_s41467_024_47929_7 crossref_primary_10_1002_ajb2_70021 crossref_primary_10_3389_fmicb_2021_712106 crossref_primary_10_1038_s41437_023_00613_w crossref_primary_10_3390_plants11030426 crossref_primary_10_1038_s41586_023_06865_0 crossref_primary_10_1093_jmammal_gyae157 crossref_primary_10_1111_1755_0998_14050 crossref_primary_10_3389_fgene_2022_863617 crossref_primary_10_1098_rsos_220939 crossref_primary_10_1128_aac_01235_24 crossref_primary_10_1007_s11686_024_00976_y crossref_primary_10_1002_ece3_5605 crossref_primary_10_1128_mra_01184_23 crossref_primary_10_1128_spectrum_01570_22 crossref_primary_10_1080_23802359_2020_1768932 crossref_primary_10_1128_mra_00889_24 crossref_primary_10_3390_microorganisms12122450 crossref_primary_10_1080_23802359_2020_1869619 crossref_primary_10_3389_fmicb_2021_754698 crossref_primary_10_3390_v15071596 crossref_primary_10_1093_isd_ixac022 crossref_primary_10_1186_s43008_022_00088_0 crossref_primary_10_1093_dnares_dsad013 crossref_primary_10_1093_nar_gkad805 crossref_primary_10_1073_pnas_2414220121 crossref_primary_10_1007_s11557_024_01961_5 crossref_primary_10_1016_j_phymed_2024_156338 crossref_primary_10_1111_myc_13632 crossref_primary_10_3897_zookeys_1121_89539 crossref_primary_10_1007_s42991_023_00390_3 crossref_primary_10_1016_j_jgar_2022_03_002 crossref_primary_10_12657_folmal_031_019 crossref_primary_10_11646_zootaxa_4933_3_8 crossref_primary_10_1080_23802359_2022_2113753 crossref_primary_10_1007_s10228_024_00997_7 crossref_primary_10_13158_heia_35_1_2022_105 crossref_primary_10_1038_s41598_022_20701_x crossref_primary_10_1111_1462_2920_16394 crossref_primary_10_1007_s10530_024_03344_z crossref_primary_10_1111_jpy_13256 crossref_primary_10_3390_genes13050863 crossref_primary_10_1093_femsec_fiaa202 crossref_primary_10_1016_j_meegid_2020_104209 crossref_primary_10_1371_journal_pbio_3001676 crossref_primary_10_1002_vms3_710 crossref_primary_10_1080_23802359_2021_1967803 crossref_primary_10_1093_molbev_msad041 crossref_primary_10_1186_s12864_024_09978_6 crossref_primary_10_1126_sciadv_add3584 crossref_primary_10_1080_00275514_2022_2125712 crossref_primary_10_1111_eva_13246 crossref_primary_10_1128_AEM_00242_21 crossref_primary_10_1016_j_isci_2024_110300 crossref_primary_10_1007_s00441_024_03918_2 crossref_primary_10_1126_science_adp7978 crossref_primary_10_1111_1755_0998_14045 crossref_primary_10_1093_gigascience_giae091 crossref_primary_10_1111_jfb_15572 crossref_primary_10_1093_pnasnexus_pgab007 crossref_primary_10_3390_d16010018 crossref_primary_10_1898_1051_1733_103_1_81 crossref_primary_10_1094_PDIS_05_21_1039_RE crossref_primary_10_1038_s41598_022_26453_y crossref_primary_10_1080_23802359_2022_2158694 crossref_primary_10_3390_ijms20246219 crossref_primary_10_1007_s00253_025_13448_8 crossref_primary_10_1007_s13225_023_00530_7 crossref_primary_10_3897_phytokeys_211_87842 crossref_primary_10_1073_pnas_2206808120 crossref_primary_10_1128_spectrum_02048_24 crossref_primary_10_1080_00218839_2024_2314418 crossref_primary_10_1186_s12862_021_01923_5 crossref_primary_10_1093_aob_mcae207 crossref_primary_10_1111_nph_20432 crossref_primary_10_1016_j_ajic_2024_09_002 crossref_primary_10_1111_nph_19444 crossref_primary_10_1016_j_celrep_2021_109292 crossref_primary_10_1038_s41598_024_57827_z crossref_primary_10_1021_acs_jnatprod_1c00414 crossref_primary_10_1016_j_algal_2023_103141 crossref_primary_10_1007_s00606_021_01789_6 crossref_primary_10_3390_antibiotics11070883 crossref_primary_10_1016_j_funbio_2024_09_006 crossref_primary_10_3897_aiep_54_122366 crossref_primary_10_1007_s00705_022_05589_2 crossref_primary_10_1111_jpy_13220 crossref_primary_10_1206_3970_1 crossref_primary_10_1038_s42256_024_00935_2 crossref_primary_10_1016_j_fm_2024_104688 crossref_primary_10_1128_JCM_01236_21 crossref_primary_10_3389_fmars_2022_964114 crossref_primary_10_1111_cla_12561 crossref_primary_10_1111_1442_1984_12507 crossref_primary_10_1111_tpj_16854 crossref_primary_10_1371_journal_pcbi_1012591 crossref_primary_10_1080_23802359_2023_2288441 crossref_primary_10_1099_mgen_0_001078 crossref_primary_10_1002_aps3_11554 crossref_primary_10_3389_fbinf_2022_871393 crossref_primary_10_1111_febs_17377 crossref_primary_10_1002_aps3_11557 crossref_primary_10_3390_microorganisms11112819 crossref_primary_10_1016_j_ejop_2023_125990 crossref_primary_10_1590_0102_33062020abb0426 crossref_primary_10_1099_mgen_0_001089 crossref_primary_10_7554_eLife_60568 crossref_primary_10_1099_mgen_0_001095 crossref_primary_10_1016_j_algal_2024_103887 crossref_primary_10_1016_j_micres_2023_127536 crossref_primary_10_1094_MPMI_35_6 crossref_primary_10_1111_1365_2656_13969 crossref_primary_10_3390_molecules29020477 crossref_primary_10_1038_s41467_021_24126_4 crossref_primary_10_1093_molbev_msad080 crossref_primary_10_1073_pnas_2010761117 crossref_primary_10_1111_ele_14359 crossref_primary_10_1093_aob_mcae214 crossref_primary_10_7554_eLife_92362_4 crossref_primary_10_1016_j_fgb_2020_103435 crossref_primary_10_1126_science_adj7430 crossref_primary_10_1080_23802359_2019_1660282 crossref_primary_10_1007_s11686_022_00609_2 crossref_primary_10_1016_j_jip_2024_108198 crossref_primary_10_1111_1749_4877_12917 crossref_primary_10_3897_zookeys_1208_127135 crossref_primary_10_1111_jbi_14840 crossref_primary_10_1016_j_jip_2021_107687 crossref_primary_10_1128_mra_00444_22 crossref_primary_10_1600_036364424X17189138775920 crossref_primary_10_1038_s41396_022_01266_z crossref_primary_10_1080_22221751_2024_2361030 crossref_primary_10_1093_molbev_msz292 crossref_primary_10_1126_science_aba5256 crossref_primary_10_3390_jof6040282 crossref_primary_10_1038_s41467_020_14558_9 crossref_primary_10_3390_v16020252 crossref_primary_10_3389_fvets_2022_1069062 crossref_primary_10_3390_ijms25020809 crossref_primary_10_3724_ahr_2095_0357_2024_0018 crossref_primary_10_1093_gigascience_giae032 crossref_primary_10_1038_s42003_021_01799_7 crossref_primary_10_3389_fcell_2022_795273 crossref_primary_10_1038_s41586_021_04332_2 crossref_primary_10_1080_23802359_2020_1719928 crossref_primary_10_1270_jsbbs_22017 crossref_primary_10_1111_nph_18143 crossref_primary_10_1111_mec_16836 crossref_primary_10_1080_11263504_2023_2231947 crossref_primary_10_1093_jee_toad023 crossref_primary_10_3390_antibiotics13010038 crossref_primary_10_1080_14772000_2022_2049391 crossref_primary_10_1111_mec_16833 crossref_primary_10_1016_j_ibiod_2024_105748 crossref_primary_10_17116_molgen20224003132 crossref_primary_10_1111_jbi_14821 crossref_primary_10_1186_s12870_023_04718_6 crossref_primary_10_1038_s41586_021_04247_y crossref_primary_10_1016_j_cub_2024_10_025 crossref_primary_10_1186_s12879_021_05875_5 crossref_primary_10_1093_plankt_fbac069 crossref_primary_10_3390_microorganisms11102587 crossref_primary_10_3390_plants13060846 crossref_primary_10_12657_folmal_033_001 crossref_primary_10_1111_1462_2920_16314 crossref_primary_10_3897_zookeys_1232_142629 crossref_primary_10_1093_bioinformatics_btz799 crossref_primary_10_3390_ijms232213881 crossref_primary_10_1080_00380768_2022_2029220 crossref_primary_10_1093_ve_veae011 crossref_primary_10_3390_microorganisms9020345 crossref_primary_10_1002_lno_12693 crossref_primary_10_1016_j_ygeno_2021_05_019 crossref_primary_10_1099_ijsem_0_005979 crossref_primary_10_1111_cla_12558 crossref_primary_10_3343_alm_2021_41_5_489 crossref_primary_10_3390_plants12040930 crossref_primary_10_1111_ivb_12379 crossref_primary_10_1186_s12864_023_09785_5 crossref_primary_10_1371_journal_pgen_1011118 crossref_primary_10_1128_mSphere_01233_20 crossref_primary_10_1089_mdr_2023_0150 crossref_primary_10_3897_mycokeys_98_104156 crossref_primary_10_1002_ps_7676 crossref_primary_10_1080_23802359_2023_2259040 crossref_primary_10_3389_fpubh_2022_786060 crossref_primary_10_1038_s41467_023_43964_y crossref_primary_10_1111_mpp_70071 crossref_primary_10_1016_j_xplc_2023_100767 crossref_primary_10_25225_jvb_24009 crossref_primary_10_1094_PHYTO_04_22_0128_R crossref_primary_10_1186_s12915_021_01041_0 crossref_primary_10_1007_s11557_025_02031_0 crossref_primary_10_1371_journal_pntd_0010714 crossref_primary_10_1111_1755_0998_13599 crossref_primary_10_3390_ijms232213876 crossref_primary_10_1016_j_cobme_2023_100469 crossref_primary_10_25226_bboc_v143i2_2023_a3 crossref_primary_10_3201_eid2609_201495 crossref_primary_10_1016_j_cub_2019_10_044 crossref_primary_10_3897_mycokeys_108_128033 crossref_primary_10_1093_aob_mcac088 crossref_primary_10_1186_s13071_023_05875_1 crossref_primary_10_3390_vetsci12010051 crossref_primary_10_1128_msystems_00038_23 crossref_primary_10_1093_bioinformatics_btad540 crossref_primary_10_1016_j_syapm_2023_126420 crossref_primary_10_1111_1462_2920_15490 crossref_primary_10_1128_spectrum_02355_23 crossref_primary_10_1093_mollus_eyad020 crossref_primary_10_1007_s12526_024_01489_7 crossref_primary_10_1007_s13127_020_00458_9 crossref_primary_10_3389_fmicb_2022_1071385 crossref_primary_10_1111_tpj_15908 crossref_primary_10_3389_fmicb_2022_926514 crossref_primary_10_3389_fvets_2023_1055432 crossref_primary_10_1038_s41598_024_61796_8 crossref_primary_10_3390_d16040237 crossref_primary_10_3390_v14102161 crossref_primary_10_1007_s10228_023_00908_2 crossref_primary_10_1038_s41586_024_07651_2 crossref_primary_10_1038_s41467_020_16626_6 crossref_primary_10_1093_mollus_eyad011 crossref_primary_10_3390_genes14040823 crossref_primary_10_1128_spectrum_01774_23 crossref_primary_10_1007_s00606_024_01902_5 crossref_primary_10_3390_v16091425 crossref_primary_10_1186_s12862_022_02041_6 crossref_primary_10_1093_gigascience_giae063 crossref_primary_10_1126_science_add8655 crossref_primary_10_1016_j_avrs_2023_100130 crossref_primary_10_3389_fmicb_2023_1161926 crossref_primary_10_1016_j_funbio_2021_07_003 crossref_primary_10_1016_j_ympev_2023_107979 crossref_primary_10_1016_j_ympev_2023_107978 crossref_primary_10_1186_s12934_024_02420_2 crossref_primary_10_1038_s41598_024_84432_x crossref_primary_10_1016_j_ympev_2022_107682 crossref_primary_10_1186_s12915_023_01556_8 crossref_primary_10_1016_j_ecss_2022_107742 crossref_primary_10_3390_genes15060790 crossref_primary_10_1128_msphere_00505_24 crossref_primary_10_1111_1755_0998_13149 crossref_primary_10_3390_life14121591 crossref_primary_10_1186_s41232_020_00126_7 crossref_primary_10_1099_ijsem_0_005546 crossref_primary_10_3389_fmicb_2021_601490 crossref_primary_10_3390_v15010133 crossref_primary_10_1017_S0022149X25000173 crossref_primary_10_1021_acscatal_0c00754 crossref_primary_10_1093_gigascience_giae055 crossref_primary_10_3390_jof8111205 crossref_primary_10_3390_genes13111979 crossref_primary_10_1093_mollus_eyad008 crossref_primary_10_1007_s11557_024_02011_w crossref_primary_10_1038_s41396_021_01025_6 crossref_primary_10_1016_j_ympev_2022_107685 crossref_primary_10_1021_acsomega_0c03983 crossref_primary_10_1016_j_ympev_2023_107990 crossref_primary_10_3390_v16020267 crossref_primary_10_1093_ismejo_wrae129 crossref_primary_10_1007_s11103_022_01320_6 crossref_primary_10_1016_j_xplc_2023_100729 crossref_primary_10_1093_bioinformatics_btab399 crossref_primary_10_1080_09670262_2023_2279547 crossref_primary_10_1016_j_chom_2021_06_006 crossref_primary_10_1038_s41598_024_70713_y crossref_primary_10_1111_jfb_14204 crossref_primary_10_1080_23802359_2024_2444595 crossref_primary_10_3390_plants12112213 crossref_primary_10_3767_persoonia_2023_51_08 crossref_primary_10_1099_mgen_0_000694 crossref_primary_10_1093_molbev_msaa304 crossref_primary_10_1093_bioinformatics_btac134 crossref_primary_10_1099_mgen_0_000691 crossref_primary_10_3390_biom15030409 crossref_primary_10_1002_ajb2_16226 crossref_primary_10_11646_zootaxa_5536_3_1 crossref_primary_10_1186_s12879_023_08156_5 crossref_primary_10_1016_j_ympev_2023_107944 crossref_primary_10_3897_mycokeys_112_136158 crossref_primary_10_11646_zootaxa_5536_3_5 crossref_primary_10_3389_fmicb_2023_1211999 crossref_primary_10_1186_s40249_024_01244_x crossref_primary_10_1080_23802359_2021_1970632 crossref_primary_10_1111_syen_12507 crossref_primary_10_3389_fmicb_2021_636986 crossref_primary_10_1016_j_meegid_2022_105326 crossref_primary_10_1099_ijsem_0_004217 crossref_primary_10_1242_jcs_262042 crossref_primary_10_1111_jse_12744 crossref_primary_10_1016_j_resmic_2023_104029 crossref_primary_10_1080_23802359_2019_1644551 crossref_primary_10_1111_pre_12559 crossref_primary_10_1093_gbe_evac076 crossref_primary_10_3390_plants11233228 crossref_primary_10_3389_fmicb_2022_903024 crossref_primary_10_3390_microorganisms10061229 crossref_primary_10_1007_s10452_025_10172_3 crossref_primary_10_1016_j_ympev_2021_107379 crossref_primary_10_1080_23802359_2025_2475845 crossref_primary_10_1016_j_ympev_2022_107677 crossref_primary_10_1016_j_ympev_2023_107932 crossref_primary_10_1186_s12862_021_01798_6 crossref_primary_10_1038_s41467_022_32993_8 crossref_primary_10_1016_j_ympev_2022_107673 crossref_primary_10_3390_microorganisms9030666 crossref_primary_10_1021_acs_est_3c10945 crossref_primary_10_3390_ijms241813670 crossref_primary_10_3897_phytokeys_249_138951 crossref_primary_10_7717_peerj_14924 crossref_primary_10_1080_00318884_2024_2400036 crossref_primary_10_1080_23802359_2019_1688123 crossref_primary_10_1111_acv_12553 crossref_primary_10_3389_fcimb_2022_1063406 crossref_primary_10_1111_mec_17635 crossref_primary_10_1016_j_funbio_2023_10_005 crossref_primary_10_1093_gbe_evac044 crossref_primary_10_1016_j_ympev_2023_107969 crossref_primary_10_1093_sysbio_syab094 crossref_primary_10_1038_s41598_023_34086_y crossref_primary_10_1093_ismejo_wrae211 crossref_primary_10_1016_j_ympev_2023_107964 crossref_primary_10_1186_s12864_022_08336_8 crossref_primary_10_1128_jb_00298_24 crossref_primary_10_1186_s12870_024_06003_6 crossref_primary_10_1016_j_cub_2021_09_059 crossref_primary_10_1371_journal_pntd_0010791 crossref_primary_10_1093_molbev_msaa316 crossref_primary_10_1186_s12862_022_02014_9 crossref_primary_10_1093_molbev_msaa315 crossref_primary_10_1093_molbev_msaa314 crossref_primary_10_1002_ece3_70216 crossref_primary_10_3389_fmars_2022_1070341 crossref_primary_10_3390_insects13060561 crossref_primary_10_3390_fermentation10080422 crossref_primary_10_1186_s12985_023_02250_5 crossref_primary_10_1002_jmor_21770 crossref_primary_10_1016_j_ejop_2023_126005 crossref_primary_10_1360_SSV_2023_0229 crossref_primary_10_1016_j_ejop_2023_126009 crossref_primary_10_3390_cells11040631 crossref_primary_10_3201_eid2611_200087 crossref_primary_10_1038_s41467_021_21380_4 crossref_primary_10_1099_mgen_0_000659 crossref_primary_10_12688_wellcomeopenres_17891_1 crossref_primary_10_1016_j_crpvbd_2022_100078 crossref_primary_10_3390_biology12050707 crossref_primary_10_1111_jfb_14713 crossref_primary_10_1093_g3journal_jkad196 crossref_primary_10_1093_g3journal_jkae042 crossref_primary_10_1093_bioinformatics_btae361 crossref_primary_10_1002_ece3_70262 crossref_primary_10_1038_s41598_025_88011_6 crossref_primary_10_1093_gbe_evae200 crossref_primary_10_3390_jof10090600 crossref_primary_10_3390_microorganisms10101934 crossref_primary_10_1016_j_ttbdis_2022_102027 crossref_primary_10_1016_j_ttbdis_2022_102026 crossref_primary_10_1016_j_ympev_2022_107620 crossref_primary_10_1111_zsc_12418 crossref_primary_10_1016_j_protis_2022_125870 crossref_primary_10_1016_j_ympev_2024_108277 crossref_primary_10_1080_23802359_2020_1859341 crossref_primary_10_1007_s00705_021_05169_w crossref_primary_10_1242_bio_059072 crossref_primary_10_1038_s41467_022_31511_0 crossref_primary_10_1016_j_ympev_2021_107330 crossref_primary_10_3390_ijms24109100 crossref_primary_10_1093_bioinformatics_btac186 crossref_primary_10_3390_jof10090602 crossref_primary_10_1093_gigascience_giab075 crossref_primary_10_1038_s41467_024_53920_z crossref_primary_10_1038_s41559_024_02456_y crossref_primary_10_1007_s40203_024_00246_9 crossref_primary_10_1016_j_ygeno_2022_110521 crossref_primary_10_1093_biolinnean_blae028 crossref_primary_10_1016_j_ympev_2024_108281 crossref_primary_10_1016_j_ympev_2024_108283 crossref_primary_10_1080_23802359_2023_2180311 crossref_primary_10_1016_j_funbio_2024_101528 crossref_primary_10_1186_s12862_020_01713_5 crossref_primary_10_1111_mec_16747 crossref_primary_10_1038_s41467_023_36222_8 crossref_primary_10_1080_23802359_2022_2070038 crossref_primary_10_1099_jgv_0_001518 crossref_primary_10_1016_j_funbio_2024_05_011 crossref_primary_10_1186_s13073_020_00814_6 crossref_primary_10_1186_s12915_024_01935_9 crossref_primary_10_12688_f1000research_26452_1 crossref_primary_10_3389_fmicb_2021_680620 crossref_primary_10_1016_j_ympev_2023_107928 crossref_primary_10_3389_fevo_2022_873100 crossref_primary_10_1101_gr_276885_122 crossref_primary_10_1128_aac_00670_24 crossref_primary_10_1007_s00284_023_03499_3 crossref_primary_10_1016_j_ympev_2021_107321 crossref_primary_10_3390_jof8080825 crossref_primary_10_1073_pnas_2219469120 crossref_primary_10_1128_AEM_01903_19 crossref_primary_10_1016_j_cris_2024_100084 crossref_primary_10_1016_j_ibmb_2024_104115 crossref_primary_10_1093_molbev_msab203 crossref_primary_10_1128_aem_00354_24 crossref_primary_10_3389_fmicb_2023_1168507 crossref_primary_10_1007_s11259_023_10111_3 crossref_primary_10_1111_1755_0998_13675 crossref_primary_10_1093_gbe_evac009 crossref_primary_10_1002_ajb2_1693 crossref_primary_10_1007_s11557_023_01928_y crossref_primary_10_1292_jvms_24_0295 crossref_primary_10_1038_s41598_023_47378_0 crossref_primary_10_1111_tbed_14536 crossref_primary_10_1016_j_ympev_2024_108236 crossref_primary_10_3390_genes13050909 crossref_primary_10_1038_s41467_024_54427_3 crossref_primary_10_1128_spectrum_04139_23 crossref_primary_10_1073_pnas_2310585120 crossref_primary_10_1111_jzs_12465 crossref_primary_10_1534_g3_119_400826 crossref_primary_10_1128_AEM_01748_21 crossref_primary_10_3897_herpetozoa_35_e94745 crossref_primary_10_1128_aem_01725_24 crossref_primary_10_1016_j_aquaculture_2024_741982 crossref_primary_10_1111_syen_12592 crossref_primary_10_1093_gbe_evab133 crossref_primary_10_1099_jgv_0_002033 crossref_primary_10_1016_j_sajb_2023_08_032 crossref_primary_10_1186_s13071_023_05892_0 crossref_primary_10_1038_s41598_023_45377_9 crossref_primary_10_1111_nph_19804 crossref_primary_10_1128_JVI_01813_19 crossref_primary_10_1111_tpj_16480 crossref_primary_10_1111_jeb_13948 crossref_primary_10_1111_jpy_13302 crossref_primary_10_3389_fmicb_2024_1432240 crossref_primary_10_1038_s41467_024_48595_5 crossref_primary_10_3390_microorganisms10010031 crossref_primary_10_3390_vetsci10090530 crossref_primary_10_1007_s13225_021_00486_6 crossref_primary_10_1099_jgv_0_002042 crossref_primary_10_11646_zootaxa_5569_3_5 crossref_primary_10_1093_mmy_myad041 crossref_primary_10_1002_jcb_30156 crossref_primary_10_3390_vetsci9090450 crossref_primary_10_1111_1749_4877_12538 crossref_primary_10_1099_ijsem_0_006481 crossref_primary_10_1038_s41586_023_06136_y crossref_primary_10_1080_00318884_2021_1959743 crossref_primary_10_1177_10406387221075607 crossref_primary_10_1186_s13059_022_02813_9 crossref_primary_10_1080_03014460_2021_1942984 crossref_primary_10_1093_molbev_msac105 crossref_primary_10_1128_MRA_00249_21 crossref_primary_10_1093_zoolinnean_zlaa176 crossref_primary_10_1017_ice_2023_85 crossref_primary_10_1080_24750263_2024_2409908 crossref_primary_10_1007_s12600_024_01205_y crossref_primary_10_1093_sysbio_syab011 crossref_primary_10_1186_s12864_022_08452_5 crossref_primary_10_1002_bies_202200190 crossref_primary_10_1111_mec_17232 crossref_primary_10_1016_j_mib_2021_08_005 crossref_primary_10_1016_j_xgen_2022_100133 crossref_primary_10_1111_1440_1703_12458 crossref_primary_10_1111_jph_13198 crossref_primary_10_1007_s00338_024_02466_z crossref_primary_10_1111_jpy_13307 crossref_primary_10_3390_agronomy11122434 crossref_primary_10_3390_ijms24021586 crossref_primary_10_1111_eva_13765 crossref_primary_10_1007_s10096_021_04379_z crossref_primary_10_1099_mgen_0_000648 crossref_primary_10_3389_fpls_2020_588856 crossref_primary_10_3390_v12111309 crossref_primary_10_1371_journal_ppat_1012692 crossref_primary_10_7717_peerj_10155 crossref_primary_10_32604_phyton_2025_061424 crossref_primary_10_3354_dao03691 crossref_primary_10_1007_s11104_021_05103_8 crossref_primary_10_1016_j_tice_2023_102255 crossref_primary_10_1038_s41396_020_00773_1 crossref_primary_10_47371_mycosci_2024_02_006 crossref_primary_10_1080_09670262_2020_1780635 crossref_primary_10_1111_pbi_14033 crossref_primary_10_1007_s00284_020_02227_5 crossref_primary_10_1080_00275514_2023_2186743 crossref_primary_10_3372_wi_50_50109 crossref_primary_10_1080_22221751_2022_2071174 crossref_primary_10_1016_j_cub_2022_06_094 crossref_primary_10_1016_j_watres_2024_121333 crossref_primary_10_1002_jmv_29902 crossref_primary_10_1080_14772000_2023_2200306 crossref_primary_10_1016_j_rsci_2023_02_003 crossref_primary_10_1111_zsc_12491 crossref_primary_10_1038_s41598_020_79359_y crossref_primary_10_1371_journal_pone_0308030 crossref_primary_10_1007_s42770_024_01449_0 crossref_primary_10_1111_nph_16338 crossref_primary_10_3390_insects12100871 crossref_primary_10_12782_specdiv_28_199 crossref_primary_10_1038_s41559_022_01744_9 crossref_primary_10_1038_s41467_024_52337_y crossref_primary_10_1093_molbev_msac112 crossref_primary_10_3389_fmicb_2021_721395 crossref_primary_10_1038_s41598_024_78452_w crossref_primary_10_1093_molbev_msac114 crossref_primary_10_1093_molbev_msab266 crossref_primary_10_1016_j_scienta_2023_112193 crossref_primary_10_1111_mec_17687 crossref_primary_10_1186_s40850_022_00111_2 crossref_primary_10_1038_s42003_024_05961_9 crossref_primary_10_1128_aac_01083_22 crossref_primary_10_1007_s00284_024_03708_7 crossref_primary_10_1093_hr_uhad038 crossref_primary_10_1128_mra_00293_22 crossref_primary_10_1016_j_jmb_2023_168331 crossref_primary_10_3390_insects11100679 crossref_primary_10_1093_molbev_msac144 crossref_primary_10_3390_microorganisms11010031 crossref_primary_10_5252_cryptogamie_algologie2022v43a9 crossref_primary_10_1016_j_celrep_2020_108185 crossref_primary_10_1093_molbev_msac148 crossref_primary_10_3897_mycokeys_107_125571 crossref_primary_10_1371_journal_pbio_3002606 crossref_primary_10_1093_sysbio_syab052 crossref_primary_10_1186_s13059_020_1926_6 crossref_primary_10_3389_fmicb_2023_1204838 crossref_primary_10_1038_s41598_023_39339_4 crossref_primary_10_1007_s11557_024_01978_w crossref_primary_10_1038_s41598_024_59423_7 crossref_primary_10_3390_v15061244 crossref_primary_10_3390_v16081276 crossref_primary_10_1016_j_cub_2024_09_084 crossref_primary_10_1038_s41588_024_01867_8 crossref_primary_10_1371_journal_pgen_1010743 crossref_primary_10_1007_s00438_021_01829_3 crossref_primary_10_1155_2024_6366170 crossref_primary_10_1093_hr_uhae355 crossref_primary_10_12782_specdiv_28_177 crossref_primary_10_1089_cmb_2022_0357 crossref_primary_10_1099_ijsem_0_006073 crossref_primary_10_1111_nph_17649 crossref_primary_10_3390_antibiotics12030579 crossref_primary_10_1093_zoolinnean_zlaa147 crossref_primary_10_3390_ijms252212140 crossref_primary_10_3390_microorganisms9081792 crossref_primary_10_1093_sysbio_syab042 crossref_primary_10_1128_jcm_00042_24 crossref_primary_10_3897_subtbiol_50_134387 crossref_primary_10_1080_23802359_2020_1846470 crossref_primary_10_7554_eLife_86409 crossref_primary_10_1007_s00705_022_05464_0 crossref_primary_10_1111_pce_14588 crossref_primary_10_3390_v12111344 crossref_primary_10_3390_antibiotics11101357 crossref_primary_10_1128_spectrum_03570_22 crossref_primary_10_1111_syen_12566 crossref_primary_10_1038_s41467_025_57575_2 crossref_primary_10_18473_lepi_76i3_a2 crossref_primary_10_3390_insects11100677 crossref_primary_10_1126_science_abg0821 crossref_primary_10_3389_fbioe_2023_1197175 crossref_primary_10_1093_dnares_dsac037 crossref_primary_10_1128_aem_01109_23 crossref_primary_10_7554_eLife_50465 crossref_primary_10_1016_j_marpolbul_2020_111221 crossref_primary_10_3201_eid2806_211746 crossref_primary_10_1016_j_scitotenv_2024_177302 crossref_primary_10_1038_s41467_024_47282_9 crossref_primary_10_1093_zoolinnean_zlac058 crossref_primary_10_3389_fmicb_2020_01597 crossref_primary_10_1371_journal_pone_0289070 crossref_primary_10_1093_zoolinnean_zlac055 crossref_primary_10_3390_insects14010009 crossref_primary_10_1126_science_adf1323 crossref_primary_10_3989_ajbm_584 crossref_primary_10_1016_j_ijbiomac_2023_124907 crossref_primary_10_3389_fmicb_2024_1320014 crossref_primary_10_5852_ejt_2022_836_1921 crossref_primary_10_7554_eLife_73346 crossref_primary_10_1007_s00300_023_03136_6 crossref_primary_10_1111_jpy_13127 crossref_primary_10_1093_molbev_msae215 crossref_primary_10_1128_msystems_00847_23 crossref_primary_10_1080_23802359_2020_1789516 crossref_primary_10_1016_j_steroids_2024_109557 crossref_primary_10_3389_fmicb_2021_662575 crossref_primary_10_7554_eLife_84006 crossref_primary_10_1080_23802359_2022_2135407 crossref_primary_10_1093_zoolinnean_zlac069 crossref_primary_10_1038_s41576_023_00620_x crossref_primary_10_1093_molbev_msae219 crossref_primary_10_1007_s00606_024_01909_y crossref_primary_10_2744_CCB_1387_1 crossref_primary_10_1016_j_meegid_2020_104351 crossref_primary_10_1111_omi_12434 crossref_primary_10_1094_PDIS_04_24_0829_PDN crossref_primary_10_1094_PHYTO_01_23_0024_R crossref_primary_10_1007_s11557_021_01766_w crossref_primary_10_1007_s00436_020_06945_4 crossref_primary_10_3389_fimmu_2024_1505032 crossref_primary_10_1016_j_cbpa_2022_111283 crossref_primary_10_1016_j_funbio_2021_11_001 crossref_primary_10_47371_mycosci_2022_12_004 crossref_primary_10_3390_antibiotics11081006 crossref_primary_10_1002_arch_21914 crossref_primary_10_1002_edn3_401 crossref_primary_10_1084_jem_20211220 crossref_primary_10_1007_s00035_021_00268_5 crossref_primary_10_3390_jmse10050598 crossref_primary_10_1093_dnares_dsac050 crossref_primary_10_1080_23802359_2024_2405528 crossref_primary_10_1093_bioinformatics_btab863 crossref_primary_10_1080_23802359_2020_1776647 crossref_primary_10_1007_s10658_024_02915_z crossref_primary_10_5586_asbp_8935 crossref_primary_10_1093_molbev_msae238 crossref_primary_10_1128_msphere_00098_23 crossref_primary_10_1038_s42003_020_1094_y crossref_primary_10_1093_molbev_msae232 crossref_primary_10_3389_fpls_2022_960133 crossref_primary_10_3897_zse_101_143936 crossref_primary_10_3389_fpls_2022_947164 crossref_primary_10_1002_ece3_5991 crossref_primary_10_26508_lsa_202101271 crossref_primary_10_1016_j_actatropica_2021_106116 crossref_primary_10_1128_jvi_00990_23 crossref_primary_10_1186_s12866_024_03490_3 crossref_primary_10_7717_peerj_16890 crossref_primary_10_1656_045_028_m1801 crossref_primary_10_3390_ijms24054907 crossref_primary_10_7717_peerj_9259 crossref_primary_10_1021_acs_chemrev_0c01226 crossref_primary_10_55959_MSU0027_1403_BB_2023_128_5_63_71 crossref_primary_10_1007_s12225_024_10205_4 crossref_primary_10_1099_mgen_0_000928 crossref_primary_10_3897_zookeys_1146_95004 crossref_primary_10_1080_14772000_2023_2174611 crossref_primary_10_1093_femspd_ftaa010 crossref_primary_10_1371_journal_pone_0291393 crossref_primary_10_1093_jac_dkae052 crossref_primary_10_1093_zoolinnean_zlac017 crossref_primary_10_1038_s41467_022_34794_5 crossref_primary_10_1186_s40168_024_02026_1 crossref_primary_10_1016_j_jasrep_2024_104592 crossref_primary_10_1080_23802359_2020_1800428 crossref_primary_10_1128_AEM_01706_21 crossref_primary_10_3390_microorganisms11122967 crossref_primary_10_1007_s13127_024_00639_w crossref_primary_10_1038_s41598_019_46509_w crossref_primary_10_3389_fmicb_2024_1393824 crossref_primary_10_1126_science_abk3112 crossref_primary_10_1111_eva_13350 crossref_primary_10_1007_s12041_022_01405_7 crossref_primary_10_1016_j_ijfoodmicro_2025_111081 crossref_primary_10_1111_1744_7917_13324 crossref_primary_10_1093_femsle_fnae074 crossref_primary_10_3390_ijms23094971 crossref_primary_10_1016_j_ijfoodmicro_2025_111085 crossref_primary_10_1128_spectrum_02381_23 crossref_primary_10_1002_aps3_11442 crossref_primary_10_2108_zs220023 crossref_primary_10_1094_MPMI_34_2 crossref_primary_10_3389_fmicb_2022_968416 crossref_primary_10_11646_zootaxa_5589_1_29 crossref_primary_10_1371_journal_ppat_1008455 crossref_primary_10_1371_journal_ppat_1009304 crossref_primary_10_1016_j_ecoenv_2023_115852 crossref_primary_10_1038_s41597_024_04360_3 crossref_primary_10_18699_vjgb_24_79 crossref_primary_10_3390_agronomy10060829 crossref_primary_10_1080_23802359_2021_1931507 crossref_primary_10_1111_tpj_15889 crossref_primary_10_3390_jof10080583 crossref_primary_10_1093_jmammal_gyae067 crossref_primary_10_1073_pnas_2023575118 crossref_primary_10_1094_PDIS_10_23_2223_RE crossref_primary_10_3390_en14051414 crossref_primary_10_1093_molbev_msac085 crossref_primary_10_1093_jambio_lxae135 crossref_primary_10_1007_s00227_022_04142_8 crossref_primary_10_1038_s41467_022_28121_1 crossref_primary_10_1093_aob_mcad018 crossref_primary_10_1093_dnares_dsac012 crossref_primary_10_1093_botlinnean_boad002 crossref_primary_10_1093_bioinformatics_btz874 crossref_primary_10_3390_biology13120979 crossref_primary_10_1128_mbio_03420_24 crossref_primary_10_1038_s41564_022_01305_7 crossref_primary_10_1016_j_molp_2024_08_003 crossref_primary_10_1073_pnas_2214729120 crossref_primary_10_11646_zootaxa_5443_3_2 crossref_primary_10_1093_aob_mcad008 crossref_primary_10_1093_bioinformatics_btaa588 crossref_primary_10_1038_s41598_023_28476_5 crossref_primary_10_1093_dnares_dsac026 crossref_primary_10_1099_ijsem_0_004715 crossref_primary_10_1007_s00425_024_04558_0 crossref_primary_10_1093_bioinformatics_btaa582 crossref_primary_10_3390_biom11121761 crossref_primary_10_1126_science_adn4955 crossref_primary_10_3389_fcell_2022_827454 crossref_primary_10_2139_ssrn_4156142 crossref_primary_10_1111_btp_70021 crossref_primary_10_3314_mmj_21_00014 crossref_primary_10_1080_00318884_2021_2024710 crossref_primary_10_1128_jvi_00921_22 crossref_primary_10_3390_d15121212 crossref_primary_10_1093_g3journal_jkab342 crossref_primary_10_3390_microorganisms11112717 crossref_primary_10_1093_botlinnean_boad022 crossref_primary_10_1016_j_simyco_2020_05_002 crossref_primary_10_1128_aac_01395_21 crossref_primary_10_1080_23802359_2023_2169572 crossref_primary_10_1007_s10750_020_04179_0 crossref_primary_10_1002_ece3_9487 crossref_primary_10_1016_j_bbalip_2024_159498 crossref_primary_10_1016_j_cmi_2023_07_024 crossref_primary_10_1094_PDIS_07_23_1396_SR crossref_primary_10_1094_PDIS_09_23_1827_RE crossref_primary_10_1111_1755_0998_13240 crossref_primary_10_1016_j_jhazmat_2024_135473 crossref_primary_10_1111_1755_0998_13243 crossref_primary_10_1038_s41597_023_02109_y crossref_primary_10_1080_15627020_2021_2007418 crossref_primary_10_1093_ve_vead024 crossref_primary_10_1093_ve_vead019 crossref_primary_10_1002_cpz1_680 crossref_primary_10_1099_ijsem_0_004753 crossref_primary_10_1038_s41437_022_00499_0 crossref_primary_10_1038_s41557_024_01576_z crossref_primary_10_1080_23802359_2019_1703590 crossref_primary_10_2108_zs220060 crossref_primary_10_1007_s10228_021_00856_9 crossref_primary_10_1016_j_heliyon_2023_e12895 crossref_primary_10_1128_mBio_00967_21 crossref_primary_10_1038_s41467_023_43186_2 crossref_primary_10_1128_mbio_03691_21 crossref_primary_10_1371_journal_pone_0287281 crossref_primary_10_1080_22221751_2021_2011618 crossref_primary_10_1016_j_ympev_2022_107393 crossref_primary_10_1097_INF_0000000000004346 crossref_primary_10_3390_pathogens13040299 crossref_primary_10_26508_lsa_202201474 crossref_primary_10_1111_1755_0998_13255 crossref_primary_10_1080_23802359_2020_1735271 crossref_primary_10_1080_00318884_2023_2292908 crossref_primary_10_1016_j_micres_2024_127747 crossref_primary_10_1186_s43008_021_00077_9 crossref_primary_10_1038_s41598_021_99172_5 crossref_primary_10_1093_ismejo_wrae062 crossref_primary_10_1093_aob_mcad033 crossref_primary_10_1038_s41591_024_03183_4 crossref_primary_10_3390_microorganisms10122426 crossref_primary_10_1038_s41467_020_20149_5 crossref_primary_10_1051_kmae_2024011 crossref_primary_10_1038_s42003_024_06296_1 crossref_primary_10_1080_15563650_2021_1928165 crossref_primary_10_1111_1442_1984_12479 crossref_primary_10_1093_aob_mcad060 crossref_primary_10_1007_s13127_022_00552_0 crossref_primary_10_1007_s12602_022_09999_1 crossref_primary_10_1093_biolinnean_blaf006 crossref_primary_10_1002_ppp3_10326 crossref_primary_10_1016_j_ympev_2025_108295 crossref_primary_10_1186_s12864_024_11194_1 crossref_primary_10_1073_pnas_2319679121 crossref_primary_10_3390_v13112190 crossref_primary_10_1016_j_ttbdis_2021_101726 crossref_primary_10_11646_zootaxa_5594_2_10 crossref_primary_10_3201_eid2703_203839 crossref_primary_10_1016_j_xplc_2024_100944 crossref_primary_10_1038_s41586_022_04757_3 crossref_primary_10_1128_spectrum_03416_23 crossref_primary_10_3390_biology11121779 crossref_primary_10_1086_730857 crossref_primary_10_1093_mollus_eyae006 crossref_primary_10_1007_s00300_024_03282_5 crossref_primary_10_1038_s41467_024_53533_6 crossref_primary_10_1128_mra_01151_21 crossref_primary_10_1016_j_protis_2022_125908 crossref_primary_10_1007_s00705_021_05299_1 crossref_primary_10_1093_femsyr_foac044 crossref_primary_10_1038_s41477_023_01555_1 crossref_primary_10_3390_agronomy14071519 crossref_primary_10_1007_s11557_023_01876_7 crossref_primary_10_1007_s00705_021_05068_0 crossref_primary_10_1016_j_lana_2022_100186 crossref_primary_10_1111_1442_1984_12482 crossref_primary_10_1016_j_ympev_2025_108287 crossref_primary_10_3390_v14102251 crossref_primary_10_3389_fmicb_2022_863123 crossref_primary_10_1016_j_ympev_2025_108285 crossref_primary_10_1186_s13104_023_06507_8 crossref_primary_10_1016_j_biocontrol_2021_104729 crossref_primary_10_1016_j_isci_2023_108252 crossref_primary_10_3389_fmicb_2023_1166013 crossref_primary_10_3390_life12122005 crossref_primary_10_1002_ece3_9043 crossref_primary_10_1007_s10592_020_01326_x crossref_primary_10_1016_j_ppees_2024_125811 crossref_primary_10_1186_s12864_021_07861_2 crossref_primary_10_1016_j_pathol_2020_06_006 crossref_primary_10_1186_s40168_024_01897_8 crossref_primary_10_1111_2041_210X_13512 crossref_primary_10_1016_j_funbio_2023_09_005 crossref_primary_10_1016_j_hpj_2024_01_016 crossref_primary_10_1093_genetics_iyad024 crossref_primary_10_1080_13235818_2022_2129943 crossref_primary_10_1093_cid_ciaa1236 crossref_primary_10_1111_mec_15824 crossref_primary_10_1111_nph_20148 crossref_primary_10_1128_aem_00599_24 crossref_primary_10_26508_lsa_202201439 crossref_primary_10_1186_s12870_024_05083_8 crossref_primary_10_1016_j_ijbiomac_2023_126738 crossref_primary_10_7717_peerj_18255 crossref_primary_10_1016_j_ejphar_2025_177312 crossref_primary_10_1016_j_tube_2023_102376 crossref_primary_10_3897_BDJ_12_e125570 crossref_primary_10_1093_infdis_jiad258 crossref_primary_10_1007_s10327_021_01005_w crossref_primary_10_1007_s00705_024_06066_8 crossref_primary_10_1016_j_sbi_2021_04_001 crossref_primary_10_1016_j_celrep_2021_108916 crossref_primary_10_1093_ve_veac115 crossref_primary_10_3390_biology12050663 crossref_primary_10_3897_zookeys_1156_96698 crossref_primary_10_1186_s12866_021_02419_4 crossref_primary_10_1111_zsc_12705 crossref_primary_10_3389_fmicb_2024_1356025 crossref_primary_10_1038_s41598_021_93320_7 crossref_primary_10_3897_zookeys_1205_125014 crossref_primary_10_7554_eLife_78695 crossref_primary_10_1038_s41541_024_01058_w crossref_primary_10_1038_s41522_021_00216_5 crossref_primary_10_1016_j_meegid_2021_105135 crossref_primary_10_3389_fmars_2023_1109655 crossref_primary_10_1093_bioinformatics_btad692 crossref_primary_10_1007_s11557_021_01735_3 crossref_primary_10_1128_aem_01368_22 crossref_primary_10_1134_S1062360424700164 crossref_primary_10_1016_j_ijid_2022_05_010 crossref_primary_10_1093_g3journal_jkac285 crossref_primary_10_3390_microorganisms10061177 crossref_primary_10_1128_aem_00929_23 crossref_primary_10_3390_jmse13020223 crossref_primary_10_1007_s13127_021_00531_x crossref_primary_10_3201_eid3008_240021 crossref_primary_10_1099_mgen_0_001373 crossref_primary_10_1111_nph_18284 crossref_primary_10_1099_ijsem_0_005649 crossref_primary_10_1186_s12870_024_05996_4 crossref_primary_10_1093_aob_mcad099 crossref_primary_10_3897_mycokeys_87_73082 crossref_primary_10_1073_pnas_2318704121 crossref_primary_10_1093_g3journal_jkad125 crossref_primary_10_1016_j_aqrep_2024_102496 crossref_primary_10_1007_s00284_025_04147_8 crossref_primary_10_3897_zookeys_1186_112796 crossref_primary_10_1111_1758_2229_13000 crossref_primary_10_1128_msystems_00544_21 crossref_primary_10_1111_jipb_13415 crossref_primary_10_1093_bioinformatics_btac252 crossref_primary_10_1155_2021_7226353 crossref_primary_10_1016_j_cub_2024_01_070 crossref_primary_10_1111_1755_0998_13762 crossref_primary_10_3390_v15020442 crossref_primary_10_1093_gbe_evad038 crossref_primary_10_1071_IS24040 crossref_primary_10_3389_fgene_2021_825742 crossref_primary_10_1099_ijsem_0_005683 crossref_primary_10_1093_ismejo_wrae110 crossref_primary_10_1021_acsomega_4c01897 crossref_primary_10_3897_zse_96_52484 crossref_primary_10_1016_j_ydbio_2022_06_003 crossref_primary_10_1038_s41545_024_00350_5 crossref_primary_10_1002_ece3_11148 crossref_primary_10_1038_s41477_024_01892_9 crossref_primary_10_7717_peerj_13720 crossref_primary_10_1093_cid_ciab358 crossref_primary_10_1111_imb_12841 crossref_primary_10_1111_nph_19079 crossref_primary_10_1128_AEM_02350_19 crossref_primary_10_1186_s43008_023_00121_w crossref_primary_10_1093_sysbio_syac031 crossref_primary_10_1111_1755_0998_13770 crossref_primary_10_1007_s12275_020_0325_8 crossref_primary_10_1186_s12864_022_09049_8 crossref_primary_10_1099_mgen_0_000581 crossref_primary_10_1016_j_scitotenv_2021_147988 crossref_primary_10_1080_23802359_2022_2154622 crossref_primary_10_1099_ijsem_0_006515 crossref_primary_10_7554_eLife_93629_3 crossref_primary_10_3389_fmicb_2023_1133917 crossref_primary_10_3390_jof8070701 crossref_primary_10_1002_ece3_9536 crossref_primary_10_1007_s00705_023_05764_z crossref_primary_10_1099_ijsem_0_006523 crossref_primary_10_3390_microorganisms12050875 crossref_primary_10_3390_vetsci8090180 crossref_primary_10_1093_gbe_evad041 crossref_primary_10_1038_s41564_022_01268_9 crossref_primary_10_1093_evolut_qpad010 crossref_primary_10_3390_genes15030300 crossref_primary_10_1016_j_jbc_2021_100927 crossref_primary_10_1016_j_isci_2023_106893 crossref_primary_10_1016_j_jare_2024_07_023 crossref_primary_10_1093_sysbio_syac064 crossref_primary_10_1021_acs_jchemed_1c00022 crossref_primary_10_1099_mgen_0_000593 crossref_primary_10_1007_s11356_023_26220_0 crossref_primary_10_3389_fpls_2021_637009 crossref_primary_10_1080_23802359_2020_1734494 crossref_primary_10_1111_mec_17515 crossref_primary_10_1016_j_marpolbul_2024_116490 crossref_primary_10_1038_s41598_023_40322_2 crossref_primary_10_2139_ssrn_3606774 crossref_primary_10_1007_s42991_022_00312_9 crossref_primary_10_1099_ijsem_0_006553 crossref_primary_10_1007_s00284_024_03622_y crossref_primary_10_3389_fevo_2022_829989 crossref_primary_10_31857_S0042875223030098 crossref_primary_10_1111_syen_12414 crossref_primary_10_1111_efp_12757 crossref_primary_10_1128_spectrum_00867_24 crossref_primary_10_1093_sysbio_syac056 crossref_primary_10_1111_mec_16654 crossref_primary_10_1600_036364424X17110456120677 crossref_primary_10_1038_s41559_022_01838_4 crossref_primary_10_1038_s41467_024_53756_7 crossref_primary_10_1002_ajb2_16352 crossref_primary_10_1007_s00338_021_02072_3 crossref_primary_10_1002_aqc_3953 crossref_primary_10_1093_gbe_evad028 crossref_primary_10_1093_gbe_evac175 crossref_primary_10_1093_gbe_evad025 crossref_primary_10_1099_ijsem_0_006543 crossref_primary_10_3389_fmicb_2022_894241 crossref_primary_10_1002_ajb2_16350 crossref_primary_10_1080_03736687_2023_2239997 crossref_primary_10_1128_jvi_01803_22 crossref_primary_10_1093_gbe_evac170 crossref_primary_10_1111_1462_2920_15893 crossref_primary_10_1007_s11105_025_01528_y crossref_primary_10_1080_23802359_2023_2252942 crossref_primary_10_1038_s42003_022_03645_w crossref_primary_10_3897_asp_81_e98141 crossref_primary_10_1007_s11270_024_07571_x crossref_primary_10_1111_pre_12466 crossref_primary_10_46234_ccdcw2024_086 crossref_primary_10_1093_gbe_evac147 crossref_primary_10_11646_zootaxa_5311_2_6 crossref_primary_10_3897_subtbiol_46_110269 crossref_primary_10_1002_ajb2_16381 crossref_primary_10_1038_s41477_022_01146_6 crossref_primary_10_1371_journal_pone_0274342 crossref_primary_10_1099_ijsem_0_006575 crossref_primary_10_3390_insects13050403 crossref_primary_10_7554_eLife_89277_3 crossref_primary_10_1186_s12864_021_07590_6 crossref_primary_10_1007_s10695_023_01192_7 crossref_primary_10_1093_g3journal_jkad077 crossref_primary_10_1093_jxb_erae026 crossref_primary_10_1111_imb_12885 crossref_primary_10_1016_j_isci_2023_108665 crossref_primary_10_3390_v15020410 crossref_primary_10_1016_j_pld_2023_03_005 crossref_primary_10_1186_s43008_022_00104_3 crossref_primary_10_1016_j_jgar_2022_01_008 crossref_primary_10_1016_j_plantsci_2020_110792 crossref_primary_10_1128_msphere_00845_24 crossref_primary_10_1038_s41598_023_39652_y crossref_primary_10_1093_gbe_evad002 crossref_primary_10_1590_1678_4685_gmb_2023_0331 crossref_primary_10_3390_d15020249 crossref_primary_10_1038_s41597_021_01015_5 crossref_primary_10_1016_j_flora_2025_152713 crossref_primary_10_3114_sim_2022_104_01 crossref_primary_10_1111_tbed_13588 crossref_primary_10_1128_spectrum_01964_23 crossref_primary_10_1038_s41564_023_01472_1 crossref_primary_10_1186_s12915_024_02108_4 crossref_primary_10_1111_mec_15770 crossref_primary_10_1016_j_virol_2022_03_011 crossref_primary_10_1016_j_isci_2023_107307 crossref_primary_10_1093_biolinnean_blae121 crossref_primary_10_1093_gbe_evac127 crossref_primary_10_1093_gbe_evab274 crossref_primary_10_1038_s41586_022_05559_3 crossref_primary_10_1007_s00248_022_02099_1 crossref_primary_10_1128_spectrum_04165_22 crossref_primary_10_3389_fmicb_2024_1456993 crossref_primary_10_1186_s12864_022_08791_3 crossref_primary_10_1111_mec_16617 crossref_primary_10_1128_spectrum_03298_24 crossref_primary_10_1093_molbev_msaa235 crossref_primary_10_1093_cid_ciab770 crossref_primary_10_1111_gcb_16119 crossref_primary_10_1016_j_csbj_2023_01_030 crossref_primary_10_1038_s41598_024_69882_7 crossref_primary_10_1038_s43705_021_00061_9 crossref_primary_10_1093_gbe_evac129 crossref_primary_10_7717_peerj_10234 crossref_primary_10_1099_mgen_0_000565 crossref_primary_10_1099_ijsem_0_006104 crossref_primary_10_1038_s41598_023_32587_4 crossref_primary_10_1038_s41467_025_55834_w crossref_primary_10_1038_s41598_021_88603_y crossref_primary_10_1128_spectrum_01919_22 crossref_primary_10_1093_evolut_qpad035 crossref_primary_10_1038_s41559_023_02301_8 crossref_primary_10_1016_j_phytochem_2021_112668 crossref_primary_10_1038_s43705_023_00228_6 crossref_primary_10_1073_pnas_2318857121 crossref_primary_10_1038_s41598_022_13706_z crossref_primary_10_1093_zoolinnean_zlab121 crossref_primary_10_1007_s00606_021_01760_5 crossref_primary_10_3390_plants13152160 crossref_primary_10_1007_s11557_023_01912_6 crossref_primary_10_1073_pnas_2312371121 crossref_primary_10_1007_s12600_020_00844_1 crossref_primary_10_1371_journal_pone_0275623 crossref_primary_10_1128_mSystems_00316_20 crossref_primary_10_1016_j_chom_2022_03_001 crossref_primary_10_1111_1744_7917_13364 crossref_primary_10_1071_IS20088 crossref_primary_10_1093_plphys_kiac467 crossref_primary_10_1099_ijsem_0_006132 crossref_primary_10_1186_s12864_024_10082_y crossref_primary_10_1600_036364423X17000842213560 crossref_primary_10_3390_microorganisms11071779 crossref_primary_10_1600_036364423X17000842213579 crossref_primary_10_3390_v14112500 crossref_primary_10_1186_s12864_023_09195_7 crossref_primary_10_3390_vaccines11061044 crossref_primary_10_1670_21_043 crossref_primary_10_3389_fgene_2023_1289811 crossref_primary_10_1371_journal_pntd_0011145 crossref_primary_10_3390_d16060337 crossref_primary_10_1111_mec_16270 crossref_primary_10_1007_s12602_024_10259_7 crossref_primary_10_1016_j_ijbiomac_2024_129232 crossref_primary_10_1093_plphys_kiae634 crossref_primary_10_1007_s10764_021_00212_8 crossref_primary_10_1080_23802359_2024_2412225 crossref_primary_10_1093_gbe_evab260 crossref_primary_10_1186_s12866_021_02228_9 crossref_primary_10_3389_fmicb_2023_1335173 crossref_primary_10_1080_0028825X_2025_2454607 crossref_primary_10_1007_s10142_024_01316_z crossref_primary_10_1534_g3_119_400724 crossref_primary_10_1073_pnas_2020457119 crossref_primary_10_1111_syen_12493 crossref_primary_10_1038_s41467_024_46680_3 crossref_primary_10_1016_j_vaccine_2022_03_026 crossref_primary_10_1094_PHYTOFR_05_23_0058_FI crossref_primary_10_3201_eid2712_211488 crossref_primary_10_1080_23802359_2022_2107457 crossref_primary_10_1093_plphys_kiac444 crossref_primary_10_3897_zookeys_1221_131258 crossref_primary_10_1128_mra_00292_22 crossref_primary_10_1093_molbev_msaa291 crossref_primary_10_1038_s41467_020_19200_2 crossref_primary_10_1128_msphere_00127_24 crossref_primary_10_1186_s40168_021_01108_8 crossref_primary_10_1007_s12526_022_01310_3 crossref_primary_10_1007_s10228_024_01006_7 crossref_primary_10_1371_journal_ppat_1012579 crossref_primary_10_3389_fpls_2023_1270052 crossref_primary_10_1093_zoolinnean_zlac002 crossref_primary_10_1016_j_jbc_2023_105110 crossref_primary_10_1038_s41598_021_90145_2 crossref_primary_10_1111_ina_12777 crossref_primary_10_1038_s41477_021_00964_4 crossref_primary_10_3390_jmse10111567 crossref_primary_10_1007_s13127_021_00490_3 crossref_primary_10_1371_journal_pgen_1009820 crossref_primary_10_1093_gbe_evab242 crossref_primary_10_3390_d17010008 crossref_primary_10_1111_1749_4877_12676 crossref_primary_10_1099_ijsem_0_005293 crossref_primary_10_1080_23802359_2022_2107462 crossref_primary_10_1093_molbev_msab154 crossref_primary_10_1186_s13059_021_02583_w crossref_primary_10_1007_s00248_021_01686_y crossref_primary_10_3390_microorganisms10102063 crossref_primary_10_1002_arch_21971 crossref_primary_10_1016_j_jasrep_2024_104633 crossref_primary_10_1080_23802359_2023_2196359 crossref_primary_10_1590_1678_4685_gmb_2020_0301 crossref_primary_10_3390_ijms22115556 crossref_primary_10_1038_s41467_022_28806_7 crossref_primary_10_1111_ppa_13625 crossref_primary_10_3390_ani10071157 crossref_primary_10_1016_j_virusres_2024_199473 crossref_primary_10_1038_s41467_021_23741_5 crossref_primary_10_1038_s42003_024_06247_w crossref_primary_10_1002_tafs_10439 crossref_primary_10_3897_zookeys_1121_84171 crossref_primary_10_1093_molbev_msaa297 crossref_primary_10_1002_ece3_11103 crossref_primary_10_1099_mgen_0_000945 crossref_primary_10_1016_j_jasrep_2023_104349 crossref_primary_10_1111_mec_17564 crossref_primary_10_1038_s41467_025_56150_z crossref_primary_10_47371_mycosci_2023_1_004 crossref_primary_10_1128_jvi_00997_24 crossref_primary_10_5852_ejt_2021_750_1369 crossref_primary_10_1016_j_asd_2020_101007 crossref_primary_10_1186_s12864_023_09734_2 crossref_primary_10_1093_bioinformatics_btae096 crossref_primary_10_3390_pathogens12070891 crossref_primary_10_3390_v14030629 crossref_primary_10_1186_s13071_022_05191_0 crossref_primary_10_1080_23802359_2022_2107443 crossref_primary_10_1038_s41467_024_54152_x crossref_primary_10_1093_hr_uhae005 crossref_primary_10_1093_molbev_msab151 crossref_primary_10_3390_genes13030399 crossref_primary_10_1007_s00705_020_04859_1 crossref_primary_10_3390_d17010061 crossref_primary_10_1093_sysbio_syac029 crossref_primary_10_3390_biom13010110 crossref_primary_10_3390_ijms25115967 crossref_primary_10_1002_ajb2_16327 crossref_primary_10_1007_s00227_022_04088_x crossref_primary_10_1093_molbev_msae208 crossref_primary_10_1093_dnares_dsaf002 crossref_primary_10_3389_fpls_2022_1030647 crossref_primary_10_1128_msphere_00297_22 crossref_primary_10_3389_fmicb_2019_03028 crossref_primary_10_3390_microorganisms10081540 crossref_primary_10_1017_S0025315422001114 crossref_primary_10_1007_s00239_020_09982_w crossref_primary_10_1038_s41477_019_0486_9 crossref_primary_10_1111_mec_17549 crossref_primary_10_3389_fpls_2024_1415059 crossref_primary_10_3390_v16071133 crossref_primary_10_1099_mgen_0_000963 crossref_primary_10_3389_fgene_2024_1414074 crossref_primary_10_1007_s00239_021_10011_7 crossref_primary_10_1038_s41467_020_19355_y crossref_primary_10_1002_pro_4702 crossref_primary_10_1093_biolinnean_blaa166 crossref_primary_10_1371_journal_pone_0252973 crossref_primary_10_1002_pro_4701 crossref_primary_10_1007_s00705_020_04570_1 crossref_primary_10_1093_sysbio_syac012 crossref_primary_10_1002_tax_13245 crossref_primary_10_1098_rsob_230196 crossref_primary_10_1080_17429145_2022_2081369 crossref_primary_10_1016_j_cell_2021_02_008 crossref_primary_10_1007_s10228_023_00913_5
Cites_doi	10.1093/sysbio/syy054 10.1093/molbev/msx302 10.1007/s00239-010-9362-y 10.1093/sysbio/syq010 10.1371/journal.pone.0009490 10.1093/bioinformatics/btv184 10.1093/bioinformatics/bty384 10.1126/science.1206357 10.1093/molbev/mss112 10.1093/molbev/msu300 10.1093/bioinformatics/btu033 10.1093/genetics/139.2.993 10.1038/s41586-018-0043-0 10.1093/bioinformatics/btn445
ContentType	Journal Article
Copyright	The Author(s) 2019. Published by Oxford University Press. 2019 The Author(s) 2019. Published by Oxford University Press.
Copyright_xml	– notice: The Author(s) 2019. Published by Oxford University Press. 2019 – notice: The Author(s) 2019. Published by Oxford University Press.
DBID	TOX AAYXX CITATION NPM 7X8 5PM
DOI	10.1093/bioinformatics/btz305
DatabaseName	Oxford Journals Open Access Collection CrossRef PubMed MEDLINE - Academic PubMed Central (Full Participant titles)
DatabaseTitle	CrossRef PubMed MEDLINE - Academic
DatabaseTitleList	MEDLINE - Academic PubMed
Database_xml	– sequence: 1 dbid: NPM name: PubMed url: https://proxy.k.utb.cz/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed sourceTypes: Index Database – sequence: 2 dbid: TOX name: Oxford Journals Open Access Collection url: https://academic.oup.com/journals/ sourceTypes: Publisher
DeliveryMethod	fulltext_linktorsrc
Discipline	Biology
EISSN	1460-2059 1367-4811
EndPage	4455
ExternalDocumentID	PMC6821337 31070718 10_1093_bioinformatics_btz305 10.1093/bioinformatics/btz305
Genre	Journal Article
GrantInformation_xml	– fundername: Klaus Tschira Foundation funderid: 10.13039/501100007316 – fundername: ; ;
GroupedDBID	-~X .2P 5GY AAMVS ABJNI ABPTD ACGFS ADZXQ ALMA_UNASSIGNED_HOLDINGS F5P HW0 Q5Y RD5 TLC TN5 TOX WH7 --- -E4 .DC .I3 0R~ 23N 2WC 4.4 48X 53G 5WA 70D AAIJN AAIMJ AAJKP AAKPC AAMDB AAOGV AAPQZ AAPXW AAUQX AAVAP AAVLN AAYXX ABEJV ABEUO ABGNP ABIXL ABNKS ABPQP ABQLI ABWST ABXVV ABZBJ ACIWK ACPRK ACUFI ACUXJ ACYTK ADBBV ADEYI ADEZT ADFTL ADGKP ADGZP ADHKW ADHZD ADMLS ADOCK ADPDF ADRDM ADRTK ADVEK ADYVW ADZTZ AECKG AEGPL AEJOX AEKKA AEKSI AELWJ AEMDU AENEX AENZO AEPUE AETBJ AEWNT AFFZL AFGWE AFIYH AFOFC AFRAH AGINJ AGKEF AGQXC AGSYK AHMBA AHXPO AIJHB AJEEA AJEUX AKHUL AKWXX ALTZX ALUQC AMNDL APIBT APWMN ARIXL ASPBG AVWKF AXUDD AYOIW AZVOD BAWUL BAYMD BHONS BQDIO BQUQU BSWAC BTQHN C45 CDBKE CITATION CS3 CZ4 DAKXR DIK DILTD DU5 D~K EBD EBS EE~ EMOBN F9B FEDTE FHSFR FLIZI FLUFQ FOEOM FQBLK GAUVT GJXCC GROUPED_DOAJ GX1 H13 H5~ HAR HZ~ IOX J21 JXSIZ KAQDR KOP KQ8 KSI KSN M-Z MK~ ML0 N9A NGC NLBLG NMDNZ NOMLY NU- O9- OAWHX ODMLO OJQWA OK1 OVD OVEED P2P PAFKI PEELM PQQKQ Q1. R44 RNS ROL RPM RUSNO RW1 RXO SV3 TEORI TJP TR2 W8F WOQ X7H YAYTL YKOAZ YXANX ZKX ~91 ~KM ADRIX AFXEN BCRHZ EJD M49 NPM ROX 7X8 5PM
ID	FETCH-LOGICAL-c518t-e311956f348544462894f184a5f09f21a436c99be6734a99b264c4473a3fa3813
IEDL.DBID	TOX
ISSN	1367-4803 1367-4811
IngestDate	Thu Aug 21 14:07:30 EDT 2025 Fri Jul 11 06:01:33 EDT 2025 Wed Feb 19 02:35:13 EST 2025 Tue Jul 01 02:33:48 EDT 2025 Thu Apr 24 23:12:08 EDT 2025 Wed Apr 02 07:02:00 EDT 2025
IsDoiOpenAccess	true
IsOpenAccess	true
IsPeerReviewed	true
IsScholarly	true
Issue	21
Language	English
License	This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com http://creativecommons.org/licenses/by-nc/4.0 The Author(s) 2019. Published by Oxford University Press.
LinkModel	DirectLink
MergedId	FETCHMERGED-LOGICAL-c518t-e311956f348544462894f184a5f09f21a436c99be6734a99b264c4473a3fa3813
Notes	ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23
ORCID	0000-0001-5482-3932 0000-0001-7394-2718
OpenAccessLink	https://dx.doi.org/10.1093/bioinformatics/btz305
PMID	31070718
PQID	2231924031
PQPubID	23479
PageCount	3
ParticipantIDs	pubmedcentral_primary_oai_pubmedcentral_nih_gov_6821337 proquest_miscellaneous_2231924031 pubmed_primary_31070718 crossref_citationtrail_10_1093_bioinformatics_btz305 crossref_primary_10_1093_bioinformatics_btz305 oup_primary_10_1093_bioinformatics_btz305
ProviderPackageCode	CITATION AAYXX
PublicationCentury	2000
PublicationDate	2019-11-01
PublicationDateYYYYMMDD	2019-11-01
PublicationDate_xml	– month: 11 year: 2019 text: 2019-11-01 day: 01
PublicationDecade	2010
PublicationPlace	England
PublicationPlace_xml	– name: England
PublicationTitle	Bioinformatics
PublicationTitleAlternate	Bioinformatics
PublicationYear	2019
Publisher	Oxford University Press
Publisher_xml	– name: Oxford University Press
References	Lemoine (2023062712474076400_btz305-B11) 2018; 556 Le (2023062712474076400_btz305-B9) 2008; 24 Sanderson (2023062712474076400_btz305-B14) 2011; 333 Biczok (2023062712474076400_btz305-B3) 2017; 34 Barbera (2023062712474076400_btz305-B2) 2018; 68 Stamatakis (2023062712474076400_btz305-B15) 2006 Le (2023062712474076400_btz305-B10) 2012; 29 Price (2023062712474076400_btz305-B13) 2010; 5 Yang (2023062712474076400_btz305-B17) 1995; 139 Fletcher (2023062712474076400_btz305-B4) 1987 Zhou (2023062712474076400_btz305-B18) 2018; 35 Guindon (2023062712474076400_btz305-B5) 2010; 59 Kobert (2023062712474076400_btz305-B6) 2014 Baele (2023062712474076400_btz305-B1) 2010; 71 Nguyen (2023062712474076400_btz305-B12) 2015; 32 Stamatakis (2023062712474076400_btz305-B16) 2014; 30 Kozlov (2023062712474076400_btz305-B8) 2015; 31 Kobert (2023062712474076400_btz305-B7) 2017; 66
References_xml	– volume: 68 start-page: 365 year: 2018 ident: 2023062712474076400_btz305-B2 article-title: EPA-ng: massively parallel evolutionary placement of genetic sequences publication-title: Syst. Biol doi: 10.1093/sysbio/syy054 – volume-title: Practical Methods of Optimization year: 1987 ident: 2023062712474076400_btz305-B4 – year: 2006 ident: 2023062712474076400_btz305-B15 – volume: 35 start-page: 486 year: 2018 ident: 2023062712474076400_btz305-B18 article-title: Evaluating fast maximum likelihood-based phylogenetic programs using empirical phylogenomic data sets publication-title: Mol. Biol. Evol doi: 10.1093/molbev/msx302 – volume: 71 start-page: 34 year: 2010 ident: 2023062712474076400_btz305-B1 article-title: Using non-reversible context-dependent evolutionary models to study substitution patterns in primate non-coding sequences publication-title: J. Mol. Evol doi: 10.1007/s00239-010-9362-y – volume: 66 start-page: 205 year: 2017 ident: 2023062712474076400_btz305-B7 article-title: Efficient detection of repeating sites to accelerate phylogenetic likelihood calculations publication-title: Syst. Biol – volume: 59 start-page: 307 year: 2010 ident: 2023062712474076400_btz305-B5 article-title: New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0 publication-title: Syst. Biol doi: 10.1093/sysbio/syq010 – volume: 5 start-page: 1 year: 2010 ident: 2023062712474076400_btz305-B13 article-title: FastTree 2 – approximately maximum-likelihood trees for large alignments publication-title: PLoS One doi: 10.1371/journal.pone.0009490 – volume: 31 start-page: 2577 year: 2015 ident: 2023062712474076400_btz305-B8 article-title: ExaML version 3: a tool for phylogenomic analyses on supercomputers publication-title: Bioinformatics doi: 10.1093/bioinformatics/btv184 – volume: 34 start-page: 3399 year: 2017 ident: 2023062712474076400_btz305-B3 article-title: Two C++ libraries for counting trees on a phylogenetic terrace publication-title: Bioinformatics doi: 10.1093/bioinformatics/bty384 – volume: 333 start-page: 448 year: 2011 ident: 2023062712474076400_btz305-B14 article-title: Terraces in phylogenetic tree space publication-title: Science doi: 10.1126/science.1206357 – volume: 29 start-page: 2921 year: 2012 ident: 2023062712474076400_btz305-B10 article-title: Modeling protein evolution with several amino acid replacement matrices depending on site rates publication-title: Mol. Biol. Evol doi: 10.1093/molbev/mss112 – volume: 32 start-page: 268 year: 2015 ident: 2023062712474076400_btz305-B12 article-title: IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies publication-title: Mol. Biol. Evol doi: 10.1093/molbev/msu300 – volume: 30 start-page: 1312 year: 2014 ident: 2023062712474076400_btz305-B16 article-title: RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies publication-title: Bioinformatics doi: 10.1093/bioinformatics/btu033 – volume: 139 start-page: 993 year: 1995 ident: 2023062712474076400_btz305-B17 article-title: A space-time process model for the evolution of DNA sequences publication-title: Genetics doi: 10.1093/genetics/139.2.993 – start-page: 204 volume-title: Algorithms in Bioinformatics, Volume 8701 of Lecture Notes in Computer Science year: 2014 ident: 2023062712474076400_btz305-B6 – volume: 556 start-page: 452 year: 2018 ident: 2023062712474076400_btz305-B11 article-title: Renewing Felsensteinen phylogenetic bootstrap in the era of big data publication-title: Nature doi: 10.1038/s41586-018-0043-0 – volume: 24 start-page: 2317 year: 2008 ident: 2023062712474076400_btz305-B9 article-title: Empirical profile mixture models for phylogenetic reconstruction publication-title: Bioinformatics doi: 10.1093/bioinformatics/btn445
SSID	ssj0051444 ssj0005056
Score	2.731113
Snippet	Abstract Motivation Phylogenies are important for fundamental biological research, but also have numerous applications in biotechnology, agriculture and... Phylogenies are important for fundamental biological research, but also have numerous applications in biotechnology, agriculture, and medicine. Finding the... Phylogenies are important for fundamental biological research, but also have numerous applications in biotechnology, agriculture and medicine. Finding the...
SourceID	pubmedcentral proquest pubmed crossref oup
SourceType	Open Access Repository Aggregation Database Index Database Enrichment Source Publisher
StartPage	4453
SubjectTerms	Applications Notes
Title	RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference
URI	https://www.ncbi.nlm.nih.gov/pubmed/31070718 https://www.proquest.com/docview/2231924031 https://pubmed.ncbi.nlm.nih.gov/PMC6821337
Volume	35
hasFullText	1
inHoldings	1
isFullTextHit
isPrint
link	http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwlV3dS8MwEA8yEHwRv61fRPBFsNo2adP4NsQp4gfIBnsrSZtisWvFdaD-9V6Wdq6CqG8tTdJw1-Z-l8v9DqEj1w8ZWFJpKyeM9dZNbPOYKdsT0lFcCS6FTk6-uw-uB_Rm6A8XkNPkwnwP4XNyJrOyJhHVxMVnsvogU9JSMMSaLL__MPw60-FoZhhzA0iAmpK2mtk7dEiTv_PTkC3L1Mp2mwOd389Ozhmj3gparlEk7hq1r6IFVayhRVNX8n0dRY_dt7tb-_7qHAucinF1gsegC50lhUWRYL0zYaea4TjJ33FVljmGaeKReMtGkxHOs2eVZ5rvGIMSYEhYD-FFOGuSAzfQoHfZv7i260oKduy7YWUropndgpTQ0AepBOBl0RR8O-GnDk89V1ASxJxLFTBCBVwATIopZUSQVIBNJ5uoU5SF2kbY5SIOJFNuAsjAS6jkCWduQojwXJV4zEK0kWIU1zTjutpFHplwN4nawo-M8C10Ouv2Yng2futwDCr6a9vDRpER_D06JCIKVU7GEYAj7YHCymahLaPY2ZAAfBkAsNBCrKXyWQPNzN1-UmRPU4buIPTA92c7_5jjLloCLMZNmuMe6lSvE7UPeKeSB9Nv_BOKJwN2
linkProvider	Oxford University Press
openUrl	ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=RAxML-NG%3A+a+fast%2C+scalable+and+user-friendly+tool+for+maximum+likelihood+phylogenetic+inference&rft.jtitle=Bioinformatics+%28Oxford%2C+England%29&rft.au=Kozlov%2C+Alexey+M&rft.au=Darriba%2C+Diego&rft.au=Flouri%2C+Tom%C3%A1%C5%A1&rft.au=Morel%2C+Benoit&rft.date=2019-11-01&rft.pub=Oxford+University+Press&rft.issn=1367-4803&rft.eissn=1367-4811&rft.volume=35&rft.issue=21&rft.spage=4453&rft.epage=4455&rft_id=info:doi/10.1093%2Fbioinformatics%2Fbtz305&rft_id=info%3Apmid%2F31070718&rft.externalDocID=PMC6821337
thumbnail_l	http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1367-4803&client=summon
thumbnail_m	http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1367-4803&client=summon
thumbnail_s	http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1367-4803&client=summon