Structure of a methyl-coenzyme M reductase from Black Sea mats that oxidize methane anaerobically
The anaerobic oxidation of methane (AOM) with sulphate, an area currently generating great interest in microbiology, is accomplished by consortia of methanotrophic archaea (ANME) and sulphate-reducing bacteria. The enzyme activating methane in methanotrophic archaea has tentatively been identified a...
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Published in | Nature (London) Vol. 481; no. 7379; pp. 98 - 101 |
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Main Authors | , , , , , , |
Format | Journal Article |
Language | English |
Published |
England
Nature Publishing Group
05.01.2012
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Subjects | |
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Abstract | The anaerobic oxidation of methane (AOM) with sulphate, an area currently generating great interest in microbiology, is accomplished by consortia of methanotrophic archaea (ANME) and sulphate-reducing bacteria. The enzyme activating methane in methanotrophic archaea has tentatively been identified as a homologue of methyl-coenzyme M reductase (MCR) that catalyses the methane-forming step in methanogenic archaea. Here we report an X-ray structure of the 280 kDa heterohexameric ANME-1 MCR complex. It was crystallized uniquely from a protein ensemble purified from consortia of microorganisms collected with a submersible from a Black Sea mat catalysing AOM with sulphate. Crystals grown from the heterogeneous sample diffract to 2.1 Å resolution and consist of a single ANME-1 MCR population, demonstrating the strong selective power of crystallization. The structure revealed ANME-1 MCR in complex with coenzyme M and coenzyme B, indicating the same substrates for MCR from methanotrophic and methanogenic archaea. Differences between the highly similar structures of ANME-1 MCR and methanogenic MCR include a F(430) modification, a cysteine-rich patch and an altered post-translational amino acid modification pattern, which may tune the enzymes for their functions in different biological contexts. |
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AbstractList | The anaerobic oxidation of methane (AOM) with sulphate, an area currently generating great interest in microbiology, is accomplished by consortia of methanotrophic archaea (ANME) and sulphate-reducing bacteria (1,2). The enzyme activating methane in methanotrophic archaea has tentatively been identified as a homologue of methyl-coenzyme M reductase (MCR) that catalyses the methane-forming step in methanogenic archaea (3,4).Here we report an X-ray structure of the 280 kDa heterohexameric ANME-1MCR complex. It was crystallized uniquely from a protein ensemble purified from consortia of microorganisms collected with a submersible from a Black Sea mat catalysing AOM with sulphate (4). Crystals grown from the heterogeneous sample diffract to 2.1 A resolution and consist of a single ANME-1 MCR population, demonstrating the strong selective power of crystallization. The structure revealed ANME-1 MCR in complex with coenzyme M and coenzyme B, indicating the same substrates for MCR from methanotrophic and methanogenic archaea. Differences between the highly similar structures of ANME-1 MCR and methanogenic MCR include a [F.sub.430] modification, a cysteine-rich patch and an altered post-translational amino acid modification pattern, which may tune the enzymes for their functions in different biological contexts. The anaerobic oxidation of methane (AOM) with sulphate, an area currently generating great interest in microbiology, is accomplished by consortia of methanotrophic archaea (ANME) and sulphate-reducing bacteria. The enzyme activating methane in methano-trophic archaea has tentatively been identified as a homologue of methyl-coenzyme M reductase (MCR) that catalyses the methane-forming step in methanogenic archaea. Here we report an X-ray structure of the 280 kDa heterohexameric ANME-1 MCR complex. It was crystallized uniquely from a protein ensemble purified from consortia of microorganisms collected with a submersible from a Black Sea mat catalysing AOM with sulphate. Crystals grown from the heterogeneous sample diffract to 2.1 Å resolution and consist of a single ANME-1 MCR population, demonstrating the strong selective power of crystallization. The structure revealed ANME-1 MCR in complex with coenzyme M and coenzyme B, indicating the same substrates for MCR from methanotrophic and methanogenic archaea. Differences between the highly similar structures of ANME-1 MCR and methanogenic MCR include a F^sub 430^ modification, a cysteine-rich patch and an altered post-translational amino acid modification pattern, which may tune the enzymes for their functions in different biological contexts. [PUBLICATION ABSTRACT] The anaerobic oxidation of methane (AOM) with sulphate, an area currently generating great interest in microbiology, is accomplished by consortia of methanotrophic archaea (ANME) and sulphate-reducing bacteria. The enzyme activating methane in methanotrophic archaea has tentatively been identified as a homologue of methyl-coenzyme M reductase (MCR) that catalyses the methane-forming step in methanogenic archaea. Here we report an X-ray structure of the 280 kDa heterohexameric ANME-1 MCR complex. It was crystallized uniquely from a protein ensemble purified from consortia of microorganisms collected with a submersible from a Black Sea mat catalysing AOM with sulphate. Crystals grown from the heterogeneous sample diffract to 2.1 Å resolution and consist of a single ANME-1 MCR population, demonstrating the strong selective power of crystallization. The structure revealed ANME-1 MCR in complex with coenzyme M and coenzyme B, indicating the same substrates for MCR from methanotrophic and methanogenic archaea. Differences between the highly similar structures of ANME-1 MCR and methanogenic MCR include a F(430) modification, a cysteine-rich patch and an altered post-translational amino acid modification pattern, which may tune the enzymes for their functions in different biological contexts. |
Audience | Academic |
Author | Ermler, Ulrich Shima, Seigo Demmer, Ulrike Krueger, Martin Weinert, Tobias Kahnt, Jörg Thauer, Rudolf K |
Author_xml | – sequence: 1 givenname: Seigo surname: Shima fullname: Shima, Seigo email: shima@mpi-marburg.mpg.de organization: Max Planck Institute for Terrestrial Microbiology, Karl-Frisch-Strasse 10, D-35043 Marburg, Germany. shima@mpi-marburg.mpg.de – sequence: 2 givenname: Martin surname: Krueger fullname: Krueger, Martin – sequence: 3 givenname: Tobias surname: Weinert fullname: Weinert, Tobias – sequence: 4 givenname: Ulrike surname: Demmer fullname: Demmer, Ulrike – sequence: 5 givenname: Jörg surname: Kahnt fullname: Kahnt, Jörg – sequence: 6 givenname: Rudolf K surname: Thauer fullname: Thauer, Rudolf K – sequence: 7 givenname: Ulrich surname: Ermler fullname: Ermler, Ulrich |
BackLink | https://www.ncbi.nlm.nih.gov/pubmed/22121022$$D View this record in MEDLINE/PubMed |
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CODEN | NATUAS |
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Snippet | The anaerobic oxidation of methane (AOM) with sulphate, an area currently generating great interest in microbiology, is accomplished by consortia of... |
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SubjectTerms | Amino acids Anaerobiosis Archaea - enzymology Archaea - isolation & purification Archaea - metabolism Biocatalysis Black Sea Catalytic Domain Chemical structure Coenzymes - chemistry Coenzymes - metabolism Crystal lattices Crystal structure Crystallization Crystallography, X-Ray Crystals Cysteine - metabolism Environmental aspects Enzymes Expeditions Methane Methane - metabolism Methods Methyl groups Microbial mats Microbiology Microorganisms Models, Molecular Oxidation-Reduction Oxidoreductases - chemistry Oxidoreductases - metabolism Properties Prostheses Protein Conformation Proteins Seawater - microbiology Ships Sulfate reduction Sulfates Sulfates - metabolism |
Title | Structure of a methyl-coenzyme M reductase from Black Sea mats that oxidize methane anaerobically |
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