The flowering world: a tale of duplications

Flowering plants contain many genes, most of which were created during the past 200 or so million years through small- and large-scale duplications. Paleo-polyploidy events, in particular, have been the subject of much recent research. There is a growing consensus that one or more genome doubling or...

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Published inTrends in plant science Vol. 14; no. 12; pp. 680 - 688
Main Authors Van de Peer, Yves, Fawcett, Jeffrey A., Proost, Sebastian, Sterck, Lieven, Vandepoele, Klaas
Format Journal Article
LanguageEnglish
Published Kidlington Elsevier Ltd 01.12.2009
[Kidlington, Oxford, UK]: Elsevier Science Ltd
Elsevier
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Abstract Flowering plants contain many genes, most of which were created during the past 200 or so million years through small- and large-scale duplications. Paleo-polyploidy events, in particular, have been the subject of much recent research. There is a growing consensus that one or more genome doubling or merging events occurred early during the evolution of the flowering plants, and that many lineages have since undergone additional, independent and more recent duplication events. Here, we review the difficulties in determining the number of genome duplications and discuss how the completion of some additional genome sequences of species occupying key phylogenetic positions has led to a better understanding of the timing of certain duplication events. This is important if we want to demonstrate the significance of genome duplications for the evolution and radiation of (different groups of) flowering plants.
AbstractList Flowering plants contain many genes, most of which were created during the past 200 or so million years through small- and large-scale duplications. Paleo-polyploidy events, in particular, have been the subject of much recent research. There is a growing consensus that one or more genome doubling or merging events occurred early during the evolution of the flowering plants, and that many lineages have since undergone additional, independent and more recent duplication events. Here, we review the difficulties in determining the number of genome duplications and discuss how the completion of some additional genome sequences of species occupying key phylogenetic positions has led to a better understanding of the timing of certain duplication events. This is important if we want to demonstrate the significance of genome duplications for the evolution and radiation of (different groups of) flowering plants.Flowering plants contain many genes, most of which were created during the past 200 or so million years through small- and large-scale duplications. Paleo-polyploidy events, in particular, have been the subject of much recent research. There is a growing consensus that one or more genome doubling or merging events occurred early during the evolution of the flowering plants, and that many lineages have since undergone additional, independent and more recent duplication events. Here, we review the difficulties in determining the number of genome duplications and discuss how the completion of some additional genome sequences of species occupying key phylogenetic positions has led to a better understanding of the timing of certain duplication events. This is important if we want to demonstrate the significance of genome duplications for the evolution and radiation of (different groups of) flowering plants.
Flowering plants contain many genes, most of which were created during the past 200 or so million years through small- and large-scale duplications. Paleo-polyploidy events, in particular, have been the subject of much recent research. There is a growing consensus that one or more genome doubling or merging events occurred early during the evolution of the flowering plants, and that many lineages have since undergone additional, independent and more recent duplication events. Here, we review the difficulties in determining the number of genome duplications and discuss how the completion of some additional genome sequences of species occupying key phylogenetic positions has led to a better understanding of the timing of certain duplication events. This is important if we want to demonstrate the significance of genome duplications for the evolution and radiation of (different groups of) flowering plants.
Author Vandepoele, Klaas
Sterck, Lieven
Fawcett, Jeffrey A.
Proost, Sebastian
Van de Peer, Yves
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Cites_doi 10.1038/nature01521
10.1080/10635150590945359
10.1101/gr.4825606
10.1631/jzus.2005.B0087
10.1186/gb-2006-7-5-r43
10.1016/j.tig.2005.07.008
10.1098/rspb.2001.1782
10.1101/gr.1589103
10.1126/science.1153917
10.1146/annurev.arplant.043008.092122
10.1101/gr.3681406
10.1111/j.1469-8137.2005.01347.x
10.1016/j.pbi.2007.01.004
10.1073/pnas.0507782103
10.1093/molbev/msn187
10.1104/pp.104.054700
10.1073/pnas.212522399
10.1073/pnas.0501102102
10.1196/annals.1438.005
10.1016/j.palaeo.2005.07.006
10.1007/s12042-008-9017-y
10.1038/nature06856
10.1101/gr.080978.108
10.1105/tpc.014019
10.3732/ajb.0800126
10.1038/nature01771
10.1105/tpc.021410
10.1371/journal.pone.0001326
10.1073/pnas.0901994106
10.1016/S0378-1119(02)00689-3
10.1038/nature06148
10.1101/gr.4708406
10.1186/1471-2148-6-32
10.1186/1471-2164-9-58
10.1101/gr.2179004
10.1093/molbev/msl197
10.1105/tpc.021345
10.1101/gr.081026.108
10.1146/annurev.arplant.043008.092039
10.1073/pnas.0900906106
10.1105/tpc.106.041111
10.1073/pnas.0708072104
10.3732/ajb.0800079
10.1016/j.tig.2004.07.008
10.1111/j.0014-3820.2005.tb01775.x
10.1139/g04-047
10.1038/nrg2600
10.1142/S0219720009004199
10.1073/pnas.0603228103
10.1093/dnares/dsn008
10.1534/genetics.104.037770
10.1093/bioinformatics/btm449
10.1073/pnas.0709121104
10.1016/S0168-9525(02)02796-8
10.1093/nar/gkm965
10.1038/nrg1449
10.1016/j.tree.2005.07.008
10.1073/pnas.0307901101
10.1016/j.cell.2007.04.004
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Issue 12
Keywords Duplication
Flowering
Plant sciences
Language English
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References Veron (bib11) 2007; 24
Simillion (bib61) 2008; 24
Cui (bib22) 2006; 16
Krylov (bib60) 2003; 13
Sato (bib48) 2008; 15
Simillion (bib8) 2002; 99
Jaillon (bib12) 2007; 449
Lyons (bib25) 2008; 1
Paterson (bib19) 2005; 165
Zhang (bib20) 2005; 6B
Davis, Petrov (bib57) 2005; 21
Zheng (bib40) 2009; 7
Chapman (bib54) 2006; 103
Ming (bib13) 2008; 452
Vandepoele, Van de Peer (bib51) 2005; 137
Paterson (bib31) 2004; 101
Tang (bib17) 2008; 18
Schlueter (bib27) 2004; 47
Vandepoele (bib34) 2002; 18
Tanaka (bib50) 2008; 36
Fawcett (bib29) 2009; 106
Cannon (bib41) 2006; 103
Van de Peer (bib35) 2004; 5
Velasco (bib18) 2007; 2
Freeling (bib33) 2008; 18
Van de Peer (bib44) 2009; 10
Bell (bib23) 2005; 59
Barker (bib24) 2008; 25
Blanc, Wolfe (bib53) 2004; 16
Wikström (bib14) 2001; 268
Papp (bib59) 2003; 424
Soltis (bib5) 2009; 96
Sterck (bib49) 2007; 10
Schranz, Mitchell-Olds (bib55) 2006; 18
Bowers (bib7) 2003; 422
Soltis, Burleigh (bib32) 2009; 106
Seoighe, Gehring (bib52) 2004; 20
Tang (bib36) 2008; 320
Soltis, Soltis (bib38) 2009; 60
Simillion (bib37) 2004; 14
Crepet, Niklas (bib3) 2009; 96
Freeling (bib6) 2009; 60
Swarbreck (bib47) 2008; 36
Vandepoele (bib21) 2003; 15
Zahn (bib9) 2005; 169
Moore (bib2) 2007; 104
Tuskan (bib30) 2006; 313
Jansen (bib16) 2007; 104
Friis (bib1) 2006; 232
Blanc, Wolfe (bib26) 2004; 16
Soltis (bib46) 2008; 1133
Van de Peer (bib43) 2002; 295
Thomas (bib39) 2006; 16
Bowman (bib45) 2007; 129
Lescot (bib28) 2008; 9
Pfeil (bib42) 2005; 54
Maere (bib10) 2005; 102
Blomme (bib56) 2006; 7
Freeling, Thomas (bib58) 2006; 16
De Bodt (bib4) 2005; 20
Jansen (bib15) 2006; 6
Fawcett (10.1016/j.tplants.2009.09.001_bib29) 2009; 106
Tang (10.1016/j.tplants.2009.09.001_bib17) 2008; 18
Tuskan (10.1016/j.tplants.2009.09.001_bib30) 2006; 313
Tanaka (10.1016/j.tplants.2009.09.001_bib50) 2008; 36
Cui (10.1016/j.tplants.2009.09.001_bib22) 2006; 16
Soltis (10.1016/j.tplants.2009.09.001_bib32) 2009; 106
Tang (10.1016/j.tplants.2009.09.001_bib36) 2008; 320
Crepet (10.1016/j.tplants.2009.09.001_bib3) 2009; 96
Pfeil (10.1016/j.tplants.2009.09.001_bib42) 2005; 54
Bowers (10.1016/j.tplants.2009.09.001_bib7) 2003; 422
Krylov (10.1016/j.tplants.2009.09.001_bib60) 2003; 13
Van de Peer (10.1016/j.tplants.2009.09.001_bib44) 2009; 10
Seoighe (10.1016/j.tplants.2009.09.001_bib52) 2004; 20
Bowman (10.1016/j.tplants.2009.09.001_bib45) 2007; 129
Simillion (10.1016/j.tplants.2009.09.001_bib8) 2002; 99
Veron (10.1016/j.tplants.2009.09.001_bib11) 2007; 24
Wikström (10.1016/j.tplants.2009.09.001_bib14) 2001; 268
Jansen (10.1016/j.tplants.2009.09.001_bib16) 2007; 104
Lescot (10.1016/j.tplants.2009.09.001_bib28) 2008; 9
Freeling (10.1016/j.tplants.2009.09.001_bib6) 2009; 60
Blomme (10.1016/j.tplants.2009.09.001_bib56) 2006; 7
Blanc (10.1016/j.tplants.2009.09.001_bib53) 2004; 16
Zheng (10.1016/j.tplants.2009.09.001_bib40) 2009; 7
Bell (10.1016/j.tplants.2009.09.001_bib23) 2005; 59
Moore (10.1016/j.tplants.2009.09.001_bib2) 2007; 104
Thomas (10.1016/j.tplants.2009.09.001_bib39) 2006; 16
Vandepoele (10.1016/j.tplants.2009.09.001_bib51) 2005; 137
Freeling (10.1016/j.tplants.2009.09.001_bib33) 2008; 18
Van de Peer (10.1016/j.tplants.2009.09.001_bib35) 2004; 5
Soltis (10.1016/j.tplants.2009.09.001_bib5) 2009; 96
Papp (10.1016/j.tplants.2009.09.001_bib59) 2003; 424
Lyons (10.1016/j.tplants.2009.09.001_bib25) 2008; 1
Paterson (10.1016/j.tplants.2009.09.001_bib31) 2004; 101
Vandepoele (10.1016/j.tplants.2009.09.001_bib21) 2003; 15
Maere (10.1016/j.tplants.2009.09.001_bib10) 2005; 102
Jansen (10.1016/j.tplants.2009.09.001_bib15) 2006; 6
Velasco (10.1016/j.tplants.2009.09.001_bib18) 2007; 2
Barker (10.1016/j.tplants.2009.09.001_bib24) 2008; 25
Soltis (10.1016/j.tplants.2009.09.001_bib46) 2008; 1133
Friis (10.1016/j.tplants.2009.09.001_bib1) 2006; 232
Paterson (10.1016/j.tplants.2009.09.001_bib19) 2005; 165
Simillion (10.1016/j.tplants.2009.09.001_bib61) 2008; 24
Soltis (10.1016/j.tplants.2009.09.001_bib38) 2009; 60
Chapman (10.1016/j.tplants.2009.09.001_bib54) 2006; 103
Vandepoele (10.1016/j.tplants.2009.09.001_bib34) 2002; 18
Ming (10.1016/j.tplants.2009.09.001_bib13) 2008; 452
De Bodt (10.1016/j.tplants.2009.09.001_bib4) 2005; 20
Schranz (10.1016/j.tplants.2009.09.001_bib55) 2006; 18
Simillion (10.1016/j.tplants.2009.09.001_bib37) 2004; 14
Sato (10.1016/j.tplants.2009.09.001_bib48) 2008; 15
Schlueter (10.1016/j.tplants.2009.09.001_bib27) 2004; 47
Zhang (10.1016/j.tplants.2009.09.001_bib20) 2005; 6B
Van de Peer (10.1016/j.tplants.2009.09.001_bib43) 2002; 295
Freeling (10.1016/j.tplants.2009.09.001_bib58) 2006; 16
Blanc (10.1016/j.tplants.2009.09.001_bib26) 2004; 16
Jaillon (10.1016/j.tplants.2009.09.001_bib12) 2007; 449
Cannon (10.1016/j.tplants.2009.09.001_bib41) 2006; 103
Swarbreck (10.1016/j.tplants.2009.09.001_bib47) 2008; 36
Zahn (10.1016/j.tplants.2009.09.001_bib9) 2005; 169
Davis (10.1016/j.tplants.2009.09.001_bib57) 2005; 21
Sterck (10.1016/j.tplants.2009.09.001_bib49) 2007; 10
References_xml – volume: 18
  start-page: 606
  year: 2002
  end-page: 608
  ident: bib34
  article-title: Detecting the undetectable: uncovering duplicated segments in
  publication-title: Trends Genet.
– volume: 101
  start-page: 9903
  year: 2004
  end-page: 9908
  ident: bib31
  article-title: Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics
  publication-title: Proc. Natl. Acad. Sci. U. S. A.
– volume: 320
  start-page: 486
  year: 2008
  end-page: 488
  ident: bib36
  article-title: Synteny and collinearity in plant genomes
  publication-title: Science
– volume: 106
  start-page: 5455
  year: 2009
  end-page: 5456
  ident: bib32
  article-title: Surviving the K-T mass extinction: new perspectives of polyploidization in angiosperms
  publication-title: Proc. Natl. Acad. Sci. U. S. A.
– volume: 24
  start-page: 127
  year: 2008
  end-page: 128
  ident: bib61
  article-title: i-ADHoRe 2.0: an improved tool to detect degenerated genomic homology using genomic profiles
  publication-title: Bioinformatics
– volume: 16
  start-page: 1667
  year: 2004
  end-page: 1678
  ident: bib26
  article-title: Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes
  publication-title: Plant Cell
– volume: 129
  start-page: 229
  year: 2007
  end-page: 234
  ident: bib45
  article-title: Green genes-comparative genomics of the green branch of life
  publication-title: Cell
– volume: 102
  start-page: 5454
  year: 2005
  end-page: 5459
  ident: bib10
  article-title: Modeling gene and genome duplications in eukaryotes
  publication-title: Proc. Natl. Acad. Sci. U. S. A.
– volume: 20
  start-page: 461
  year: 2004
  end-page: 464
  ident: bib52
  article-title: Genome duplication led to highly selective expansion of the
  publication-title: Trends Genet.
– volume: 232
  start-page: 251
  year: 2006
  end-page: 293
  ident: bib1
  article-title: Cretaceous angiosperm flowers: innovation and evolution in plant reproduction
  publication-title: Palaeogeogr. Palaeocl.
– volume: 16
  start-page: 934
  year: 2006
  end-page: 946
  ident: bib39
  article-title: Following tetraploidy in an
  publication-title: Genome Res.
– volume: 268
  start-page: 2211
  year: 2001
  end-page: 2220
  ident: bib14
  article-title: Evolution of the angiosperms: calibrating the family tree
  publication-title: Proc. R Soc. Lond. B
– volume: 103
  start-page: 14959
  year: 2006
  end-page: 14964
  ident: bib41
  article-title: Legume genome evolution viewed through the
  publication-title: Proc. Natl. Acad. Sci. U. S. A.
– volume: 9
  start-page: 58
  year: 2008
  ident: bib28
  article-title: Insights into the
  publication-title: BMC Genomics
– volume: 20
  start-page: 591
  year: 2005
  end-page: 597
  ident: bib4
  article-title: Genome duplication and the origin of angiosperms
  publication-title: Trends Ecol. Evol.
– volume: 169
  start-page: 2209
  year: 2005
  end-page: 2223
  ident: bib9
  article-title: The evolution of the SEPALLATA subfamily of MADS-box genes: a preangiosperm origin with multiple duplications throughout angiosperm history
  publication-title: Genetics
– volume: 16
  start-page: 805
  year: 2006
  end-page: 814
  ident: bib58
  article-title: Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity
  publication-title: Genome Res.
– volume: 99
  start-page: 13627
  year: 2002
  end-page: 13632
  ident: bib8
  article-title: The hidden duplication past of
  publication-title: Proc. Natl. Acad. Sci. U. S. A.
– volume: 10
  start-page: 199
  year: 2007
  end-page: 203
  ident: bib49
  article-title: How many genes are there in plants (… and why are they there)?
  publication-title: Curr. Opin. Plant Biol.
– volume: 6B
  start-page: 87
  year: 2005
  end-page: 90
  ident: bib20
  article-title: Two ancient rounds of polyploidy in rice genome
  publication-title: J. Zhejiang Univ. Sci.
– volume: 15
  start-page: 227
  year: 2008
  end-page: 239
  ident: bib48
  article-title: Genome Structure of the Legume
  publication-title: Lotus japonicus. DNA Res.
– volume: 106
  start-page: 5737
  year: 2009
  end-page: 5742
  ident: bib29
  article-title: Plants with double genomes might have had a better chance to survive the Cretaceous- Tertiary extinction event
  publication-title: Proc. Natl. Acad. Sci. U. S. A.
– volume: 104
  start-page: 19369
  year: 2007
  end-page: 19374
  ident: bib16
  article-title: Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns
  publication-title: Proc. Natl. Acad. Sci. U. S. A.
– volume: 16
  start-page: 738
  year: 2006
  end-page: 749
  ident: bib22
  article-title: Widespread genome duplications throughout the history of flowering plants
  publication-title: Genome Res.
– volume: 137
  start-page: 31
  year: 2005
  end-page: 42
  ident: bib51
  article-title: Exploring the plant transcriptome through phylogenetic profiling
  publication-title: Plant Phys.
– volume: 5
  start-page: 752
  year: 2004
  end-page: 763
  ident: bib35
  article-title: Computational approaches to unveiling ancient genome duplications
  publication-title: Nat. Rev. Genet.
– volume: 36
  start-page: D1028
  year: 2008
  end-page: 1033
  ident: bib50
  article-title: The Rice Annotation Project Database (RAP-DB): 2008 update
  publication-title: Nucleic Acids Res.
– volume: 103
  start-page: 2730
  year: 2006
  end-page: 2735
  ident: bib54
  article-title: Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication
  publication-title: Proc. Natl. Acad. Sci. U. S. A.
– volume: 18
  start-page: 1944
  year: 2008
  end-page: 1954
  ident: bib17
  article-title: Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps
  publication-title: Genome Res.
– volume: 1
  start-page: 181
  year: 2008
  end-page: 190
  ident: bib25
  article-title: The value of nonmodel genomes and an example using SynMap within CoGe to dissect the hexaploidy that predates the rosids
  publication-title: Tropical Plant Biol.
– volume: 54
  start-page: 441
  year: 2005
  end-page: 454
  ident: bib42
  article-title: Placing paleopolyploidy in relation to taxon divergence: a phylogenetic analysis in legumes using 39 gene families
  publication-title: Syst. Biol.
– volume: 18
  start-page: 1152
  year: 2006
  end-page: 1165
  ident: bib55
  article-title: Independent ancient polyploidy events in the sister families Brassicaceae and Cleomaceae
  publication-title: Plant Cell
– volume: 10
  start-page: 725
  year: 2009
  end-page: 732
  ident: bib44
  article-title: The evolutionary significance of ancient genome duplications
  publication-title: Nat. Rev. Genet.
– volume: 16
  start-page: 1679
  year: 2004
  end-page: 1691
  ident: bib53
  article-title: Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution
  publication-title: Plant Cell
– volume: 313
  start-page: 1596
  year: 2006
  end-page: 1604
  ident: bib30
  article-title: The genome of black cottonwood
  publication-title: Populus trichocarpa (Torr. & Gray). Science
– volume: 1133
  start-page: 3
  year: 2008
  end-page: 25
  ident: bib46
  article-title: Origin and early evolution of angiosperms
  publication-title: Ann. NY Acad. Sci.
– volume: 60
  start-page: 433
  year: 2009
  end-page: 453
  ident: bib6
  article-title: Bias in plant gene content following different sorts of duplication: tandem, whole-genome segmental, or by transposition
  publication-title: Annu. Rev. Plant. Biol.
– volume: 452
  start-page: 991
  year: 2008
  end-page: 996
  ident: bib13
  article-title: The draft genome of the transgenic tropical fruit tree papaya (
  publication-title: Nature
– volume: 96
  start-page: 336
  year: 2009
  end-page: 348
  ident: bib5
  article-title: Polyploidy and angiosperm diversification
  publication-title: Am. J. Bot.
– volume: 6
  start-page: 32
  year: 2006
  ident: bib15
  article-title: Phylogenetic analyses of
  publication-title: BMC Evol. Biol.
– volume: 165
  start-page: 658
  year: 2005
  end-page: 661
  ident: bib19
  article-title: Ancient duplication of cereal genomes
  publication-title: New Phytol.
– volume: 25
  start-page: 2445
  year: 2008
  end-page: 2455
  ident: bib24
  article-title: Multiple paleopolyploidizations during the evolution of the Compositae reveal parallel patterns of duplicate gene retention after millions of years
  publication-title: Mol. Biol. Evol.
– volume: 47
  start-page: 868
  year: 2004
  end-page: 876
  ident: bib27
  article-title: Mining EST databases to resolve evolutionary events in major crop species
  publication-title: Genome
– volume: 18
  start-page: 1924
  year: 2008
  end-page: 1937
  ident: bib33
  article-title: Many or most genes in
  publication-title: Genome Res.
– volume: 36
  start-page: D1009
  year: 2008
  end-page: 1014
  ident: bib47
  article-title: The
  publication-title: Nucleic Acids Res.
– volume: 60
  start-page: 561
  year: 2009
  end-page: 588
  ident: bib38
  article-title: The role of hybridization in plant speciation
  publication-title: Annu. Rev. Plant Biol.
– volume: 24
  start-page: 670
  year: 2007
  end-page: 678
  ident: bib11
  article-title: Evidence of interaction network evolution by whole-genome duplications: a case study in MADS-box proteins
  publication-title: Mol. Biol. Evol.
– volume: 15
  start-page: 2192
  year: 2003
  end-page: 2202
  ident: bib21
  article-title: Evidence that rice and other cereals are ancient aneuploids
  publication-title: Plant Cell
– volume: 449
  start-page: 463
  year: 2007
  end-page: 467
  ident: bib12
  article-title: The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
  publication-title: Nature
– volume: 7
  start-page: 499
  year: 2009
  end-page: 520
  ident: bib40
  article-title: Gene loss under neighborhood selection following whole genome duplication and the reconstruction of the ancestral
  publication-title: J. Bioinform. Comput. Biol.
– volume: 295
  start-page: 205
  year: 2002
  end-page: 211
  ident: bib43
  article-title: Dealing with saturation at the amino acid level: a case study based on anciently duplicated zebrafish genes
  publication-title: Gene
– volume: 13
  start-page: 2229
  year: 2003
  end-page: 2235
  ident: bib60
  article-title: Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution
  publication-title: Genome Res.
– volume: 14
  start-page: 1095
  year: 2004
  end-page: 1106
  ident: bib37
  article-title: Building genomic profiles for uncovering segmental homology in the twilight zone
  publication-title: Genome Res.
– volume: 96
  start-page: 366
  year: 2009
  end-page: 381
  ident: bib3
  article-title: Darwin's second “abominable mystery”: why are there so many angiosperm species?
  publication-title: Amer. J. Bot.
– volume: 7
  start-page: R43
  year: 2006
  ident: bib56
  article-title: The gain and loss of genes during 600 million years of vertebrate evolution
  publication-title: Genome Biol.
– volume: 2
  start-page: e1326
  year: 2007
  ident: bib18
  article-title: A high quality draft consensus sequence of the genome of a heterozygous grapevine variety
  publication-title: PLoS ONE
– volume: 104
  start-page: 19363
  year: 2007
  end-page: 19368
  ident: bib2
  article-title: Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms
  publication-title: Proc. Natl. Acad. Sci. U. S. A.
– volume: 422
  start-page: 433
  year: 2003
  end-page: 438
  ident: bib7
  article-title: Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events
  publication-title: Nature
– volume: 59
  start-page: 1245
  year: 2005
  end-page: 1258
  ident: bib23
  article-title: The age of the angiosperms: a molecular timescale without a clock
  publication-title: Evolution
– volume: 21
  start-page: 548
  year: 2005
  end-page: 551
  ident: bib57
  article-title: Do disparate mechanisms of duplication add similar genes to the genome?
  publication-title: Trends Genet.
– volume: 424
  start-page: 194
  year: 2003
  end-page: 197
  ident: bib59
  article-title: Dosage sensitivity and the evolution of gene families in yeast
  publication-title: Nature
– volume: 422
  start-page: 433
  year: 2003
  ident: 10.1016/j.tplants.2009.09.001_bib7
  article-title: Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events
  publication-title: Nature
  doi: 10.1038/nature01521
– volume: 54
  start-page: 441
  year: 2005
  ident: 10.1016/j.tplants.2009.09.001_bib42
  article-title: Placing paleopolyploidy in relation to taxon divergence: a phylogenetic analysis in legumes using 39 gene families
  publication-title: Syst. Biol.
  doi: 10.1080/10635150590945359
– volume: 16
  start-page: 738
  year: 2006
  ident: 10.1016/j.tplants.2009.09.001_bib22
  article-title: Widespread genome duplications throughout the history of flowering plants
  publication-title: Genome Res.
  doi: 10.1101/gr.4825606
– volume: 6B
  start-page: 87
  year: 2005
  ident: 10.1016/j.tplants.2009.09.001_bib20
  article-title: Two ancient rounds of polyploidy in rice genome
  publication-title: J. Zhejiang Univ. Sci.
  doi: 10.1631/jzus.2005.B0087
– volume: 7
  start-page: R43
  year: 2006
  ident: 10.1016/j.tplants.2009.09.001_bib56
  article-title: The gain and loss of genes during 600 million years of vertebrate evolution
  publication-title: Genome Biol.
  doi: 10.1186/gb-2006-7-5-r43
– volume: 21
  start-page: 548
  year: 2005
  ident: 10.1016/j.tplants.2009.09.001_bib57
  article-title: Do disparate mechanisms of duplication add similar genes to the genome?
  publication-title: Trends Genet.
  doi: 10.1016/j.tig.2005.07.008
– volume: 268
  start-page: 2211
  year: 2001
  ident: 10.1016/j.tplants.2009.09.001_bib14
  article-title: Evolution of the angiosperms: calibrating the family tree
  publication-title: Proc. R Soc. Lond. B
  doi: 10.1098/rspb.2001.1782
– volume: 13
  start-page: 2229
  year: 2003
  ident: 10.1016/j.tplants.2009.09.001_bib60
  article-title: Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution
  publication-title: Genome Res.
  doi: 10.1101/gr.1589103
– volume: 320
  start-page: 486
  year: 2008
  ident: 10.1016/j.tplants.2009.09.001_bib36
  article-title: Synteny and collinearity in plant genomes
  publication-title: Science
  doi: 10.1126/science.1153917
– volume: 60
  start-page: 433
  year: 2009
  ident: 10.1016/j.tplants.2009.09.001_bib6
  article-title: Bias in plant gene content following different sorts of duplication: tandem, whole-genome segmental, or by transposition
  publication-title: Annu. Rev. Plant. Biol.
  doi: 10.1146/annurev.arplant.043008.092122
– volume: 16
  start-page: 805
  year: 2006
  ident: 10.1016/j.tplants.2009.09.001_bib58
  article-title: Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity
  publication-title: Genome Res.
  doi: 10.1101/gr.3681406
– volume: 165
  start-page: 658
  year: 2005
  ident: 10.1016/j.tplants.2009.09.001_bib19
  article-title: Ancient duplication of cereal genomes
  publication-title: New Phytol.
  doi: 10.1111/j.1469-8137.2005.01347.x
– volume: 10
  start-page: 199
  year: 2007
  ident: 10.1016/j.tplants.2009.09.001_bib49
  article-title: How many genes are there in plants (… and why are they there)?
  publication-title: Curr. Opin. Plant Biol.
  doi: 10.1016/j.pbi.2007.01.004
– volume: 103
  start-page: 2730
  year: 2006
  ident: 10.1016/j.tplants.2009.09.001_bib54
  article-title: Buffering of crucial functions by paleologous duplicated genes may contribute cyclicality to angiosperm genome duplication
  publication-title: Proc. Natl. Acad. Sci. U. S. A.
  doi: 10.1073/pnas.0507782103
– volume: 25
  start-page: 2445
  year: 2008
  ident: 10.1016/j.tplants.2009.09.001_bib24
  article-title: Multiple paleopolyploidizations during the evolution of the Compositae reveal parallel patterns of duplicate gene retention after millions of years
  publication-title: Mol. Biol. Evol.
  doi: 10.1093/molbev/msn187
– volume: 137
  start-page: 31
  year: 2005
  ident: 10.1016/j.tplants.2009.09.001_bib51
  article-title: Exploring the plant transcriptome through phylogenetic profiling
  publication-title: Plant Phys.
  doi: 10.1104/pp.104.054700
– volume: 99
  start-page: 13627
  year: 2002
  ident: 10.1016/j.tplants.2009.09.001_bib8
  article-title: The hidden duplication past of Arabidopsis thaliana
  publication-title: Proc. Natl. Acad. Sci. U. S. A.
  doi: 10.1073/pnas.212522399
– volume: 102
  start-page: 5454
  year: 2005
  ident: 10.1016/j.tplants.2009.09.001_bib10
  article-title: Modeling gene and genome duplications in eukaryotes
  publication-title: Proc. Natl. Acad. Sci. U. S. A.
  doi: 10.1073/pnas.0501102102
– volume: 1133
  start-page: 3
  year: 2008
  ident: 10.1016/j.tplants.2009.09.001_bib46
  article-title: Origin and early evolution of angiosperms
  publication-title: Ann. NY Acad. Sci.
  doi: 10.1196/annals.1438.005
– volume: 232
  start-page: 251
  year: 2006
  ident: 10.1016/j.tplants.2009.09.001_bib1
  article-title: Cretaceous angiosperm flowers: innovation and evolution in plant reproduction
  publication-title: Palaeogeogr. Palaeocl.
  doi: 10.1016/j.palaeo.2005.07.006
– volume: 1
  start-page: 181
  year: 2008
  ident: 10.1016/j.tplants.2009.09.001_bib25
  article-title: The value of nonmodel genomes and an example using SynMap within CoGe to dissect the hexaploidy that predates the rosids
  publication-title: Tropical Plant Biol.
  doi: 10.1007/s12042-008-9017-y
– volume: 452
  start-page: 991
  year: 2008
  ident: 10.1016/j.tplants.2009.09.001_bib13
  article-title: The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)
  publication-title: Nature
  doi: 10.1038/nature06856
– volume: 18
  start-page: 1944
  year: 2008
  ident: 10.1016/j.tplants.2009.09.001_bib17
  article-title: Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps
  publication-title: Genome Res.
  doi: 10.1101/gr.080978.108
– volume: 15
  start-page: 2192
  year: 2003
  ident: 10.1016/j.tplants.2009.09.001_bib21
  article-title: Evidence that rice and other cereals are ancient aneuploids
  publication-title: Plant Cell
  doi: 10.1105/tpc.014019
– volume: 96
  start-page: 366
  year: 2009
  ident: 10.1016/j.tplants.2009.09.001_bib3
  article-title: Darwin's second “abominable mystery”: why are there so many angiosperm species?
  publication-title: Amer. J. Bot.
  doi: 10.3732/ajb.0800126
– volume: 424
  start-page: 194
  year: 2003
  ident: 10.1016/j.tplants.2009.09.001_bib59
  article-title: Dosage sensitivity and the evolution of gene families in yeast
  publication-title: Nature
  doi: 10.1038/nature01771
– volume: 16
  start-page: 1679
  year: 2004
  ident: 10.1016/j.tplants.2009.09.001_bib53
  article-title: Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution
  publication-title: Plant Cell
  doi: 10.1105/tpc.021410
– volume: 2
  start-page: e1326
  year: 2007
  ident: 10.1016/j.tplants.2009.09.001_bib18
  article-title: A high quality draft consensus sequence of the genome of a heterozygous grapevine variety
  publication-title: PLoS ONE
  doi: 10.1371/journal.pone.0001326
– volume: 106
  start-page: 5455
  year: 2009
  ident: 10.1016/j.tplants.2009.09.001_bib32
  article-title: Surviving the K-T mass extinction: new perspectives of polyploidization in angiosperms
  publication-title: Proc. Natl. Acad. Sci. U. S. A.
  doi: 10.1073/pnas.0901994106
– volume: 295
  start-page: 205
  year: 2002
  ident: 10.1016/j.tplants.2009.09.001_bib43
  article-title: Dealing with saturation at the amino acid level: a case study based on anciently duplicated zebrafish genes
  publication-title: Gene
  doi: 10.1016/S0378-1119(02)00689-3
– volume: 449
  start-page: 463
  year: 2007
  ident: 10.1016/j.tplants.2009.09.001_bib12
  article-title: The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
  publication-title: Nature
  doi: 10.1038/nature06148
– volume: 16
  start-page: 934
  year: 2006
  ident: 10.1016/j.tplants.2009.09.001_bib39
  article-title: Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes
  publication-title: Genome Res.
  doi: 10.1101/gr.4708406
– volume: 6
  start-page: 32
  year: 2006
  ident: 10.1016/j.tplants.2009.09.001_bib15
  article-title: Phylogenetic analyses of Vitis (Vitaceae) based on complete chloroplast genome sequences: effects of taxon sampling and phylogenetic methods on resolving relationships among rosids
  publication-title: BMC Evol. Biol.
  doi: 10.1186/1471-2148-6-32
– volume: 36
  start-page: D1028
  year: 2008
  ident: 10.1016/j.tplants.2009.09.001_bib50
  article-title: The Rice Annotation Project Database (RAP-DB): 2008 update
  publication-title: Nucleic Acids Res.
– volume: 9
  start-page: 58
  year: 2008
  ident: 10.1016/j.tplants.2009.09.001_bib28
  article-title: Insights into the Musa genome: syntenic relationships to rice and between Musa species
  publication-title: BMC Genomics
  doi: 10.1186/1471-2164-9-58
– volume: 14
  start-page: 1095
  year: 2004
  ident: 10.1016/j.tplants.2009.09.001_bib37
  article-title: Building genomic profiles for uncovering segmental homology in the twilight zone
  publication-title: Genome Res.
  doi: 10.1101/gr.2179004
– volume: 24
  start-page: 670
  year: 2007
  ident: 10.1016/j.tplants.2009.09.001_bib11
  article-title: Evidence of interaction network evolution by whole-genome duplications: a case study in MADS-box proteins
  publication-title: Mol. Biol. Evol.
  doi: 10.1093/molbev/msl197
– volume: 16
  start-page: 1667
  year: 2004
  ident: 10.1016/j.tplants.2009.09.001_bib26
  article-title: Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes
  publication-title: Plant Cell
  doi: 10.1105/tpc.021345
– volume: 18
  start-page: 1924
  year: 2008
  ident: 10.1016/j.tplants.2009.09.001_bib33
  article-title: Many or most genes in Arabidopsis transposed after the origin of the order Brassicales
  publication-title: Genome Res.
  doi: 10.1101/gr.081026.108
– volume: 60
  start-page: 561
  year: 2009
  ident: 10.1016/j.tplants.2009.09.001_bib38
  article-title: The role of hybridization in plant speciation
  publication-title: Annu. Rev. Plant Biol.
  doi: 10.1146/annurev.arplant.043008.092039
– volume: 106
  start-page: 5737
  year: 2009
  ident: 10.1016/j.tplants.2009.09.001_bib29
  article-title: Plants with double genomes might have had a better chance to survive the Cretaceous- Tertiary extinction event
  publication-title: Proc. Natl. Acad. Sci. U. S. A.
  doi: 10.1073/pnas.0900906106
– volume: 18
  start-page: 1152
  year: 2006
  ident: 10.1016/j.tplants.2009.09.001_bib55
  article-title: Independent ancient polyploidy events in the sister families Brassicaceae and Cleomaceae
  publication-title: Plant Cell
  doi: 10.1105/tpc.106.041111
– volume: 104
  start-page: 19363
  year: 2007
  ident: 10.1016/j.tplants.2009.09.001_bib2
  article-title: Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms
  publication-title: Proc. Natl. Acad. Sci. U. S. A.
  doi: 10.1073/pnas.0708072104
– volume: 96
  start-page: 336
  year: 2009
  ident: 10.1016/j.tplants.2009.09.001_bib5
  article-title: Polyploidy and angiosperm diversification
  publication-title: Am. J. Bot.
  doi: 10.3732/ajb.0800079
– volume: 20
  start-page: 461
  year: 2004
  ident: 10.1016/j.tplants.2009.09.001_bib52
  article-title: Genome duplication led to highly selective expansion of the Arabidopsis thaliana proteome
  publication-title: Trends Genet.
  doi: 10.1016/j.tig.2004.07.008
– volume: 59
  start-page: 1245
  year: 2005
  ident: 10.1016/j.tplants.2009.09.001_bib23
  article-title: The age of the angiosperms: a molecular timescale without a clock
  publication-title: Evolution
  doi: 10.1111/j.0014-3820.2005.tb01775.x
– volume: 47
  start-page: 868
  year: 2004
  ident: 10.1016/j.tplants.2009.09.001_bib27
  article-title: Mining EST databases to resolve evolutionary events in major crop species
  publication-title: Genome
  doi: 10.1139/g04-047
– volume: 10
  start-page: 725
  year: 2009
  ident: 10.1016/j.tplants.2009.09.001_bib44
  article-title: The evolutionary significance of ancient genome duplications
  publication-title: Nat. Rev. Genet.
  doi: 10.1038/nrg2600
– volume: 313
  start-page: 1596
  year: 2006
  ident: 10.1016/j.tplants.2009.09.001_bib30
  article-title: The genome of black cottonwood
  publication-title: Populus trichocarpa (Torr. & Gray). Science
– volume: 7
  start-page: 499
  year: 2009
  ident: 10.1016/j.tplants.2009.09.001_bib40
  article-title: Gene loss under neighborhood selection following whole genome duplication and the reconstruction of the ancestral Populus genome
  publication-title: J. Bioinform. Comput. Biol.
  doi: 10.1142/S0219720009004199
– volume: 103
  start-page: 14959
  year: 2006
  ident: 10.1016/j.tplants.2009.09.001_bib41
  article-title: Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes
  publication-title: Proc. Natl. Acad. Sci. U. S. A.
  doi: 10.1073/pnas.0603228103
– volume: 15
  start-page: 227
  year: 2008
  ident: 10.1016/j.tplants.2009.09.001_bib48
  article-title: Genome Structure of the Legume
  publication-title: Lotus japonicus. DNA Res.
  doi: 10.1093/dnares/dsn008
– volume: 169
  start-page: 2209
  year: 2005
  ident: 10.1016/j.tplants.2009.09.001_bib9
  article-title: The evolution of the SEPALLATA subfamily of MADS-box genes: a preangiosperm origin with multiple duplications throughout angiosperm history
  publication-title: Genetics
  doi: 10.1534/genetics.104.037770
– volume: 24
  start-page: 127
  year: 2008
  ident: 10.1016/j.tplants.2009.09.001_bib61
  article-title: i-ADHoRe 2.0: an improved tool to detect degenerated genomic homology using genomic profiles
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btm449
– volume: 104
  start-page: 19369
  year: 2007
  ident: 10.1016/j.tplants.2009.09.001_bib16
  article-title: Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns
  publication-title: Proc. Natl. Acad. Sci. U. S. A.
  doi: 10.1073/pnas.0709121104
– volume: 18
  start-page: 606
  year: 2002
  ident: 10.1016/j.tplants.2009.09.001_bib34
  article-title: Detecting the undetectable: uncovering duplicated segments in Arabidopsis by comparison with rice
  publication-title: Trends Genet.
  doi: 10.1016/S0168-9525(02)02796-8
– volume: 36
  start-page: D1009
  year: 2008
  ident: 10.1016/j.tplants.2009.09.001_bib47
  article-title: The Arabidopsis Information Resource (TAIR): gene structure and function annotation
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkm965
– volume: 5
  start-page: 752
  year: 2004
  ident: 10.1016/j.tplants.2009.09.001_bib35
  article-title: Computational approaches to unveiling ancient genome duplications
  publication-title: Nat. Rev. Genet.
  doi: 10.1038/nrg1449
– volume: 20
  start-page: 591
  year: 2005
  ident: 10.1016/j.tplants.2009.09.001_bib4
  article-title: Genome duplication and the origin of angiosperms
  publication-title: Trends Ecol. Evol.
  doi: 10.1016/j.tree.2005.07.008
– volume: 101
  start-page: 9903
  year: 2004
  ident: 10.1016/j.tplants.2009.09.001_bib31
  article-title: Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics
  publication-title: Proc. Natl. Acad. Sci. U. S. A.
  doi: 10.1073/pnas.0307901101
– volume: 129
  start-page: 229
  year: 2007
  ident: 10.1016/j.tplants.2009.09.001_bib45
  article-title: Green genes-comparative genomics of the green branch of life
  publication-title: Cell
  doi: 10.1016/j.cell.2007.04.004
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Snippet Flowering plants contain many genes, most of which were created during the past 200 or so million years through small- and large-scale duplications....
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SubjectTerms Biological and medical sciences
classification
Evolution, Molecular
flowering
Fundamental and applied biological sciences. Psychology
Gene Duplication
genetics
Genome, Plant
Genome, Plant - genetics
literature reviews
Magnoliopsida
Magnoliopsida - classification
Magnoliopsida - genetics
Models, Genetic
Phylogeny
Polyploidy
Time Factors
Title The flowering world: a tale of duplications
URI https://dx.doi.org/10.1016/j.tplants.2009.09.001
https://www.ncbi.nlm.nih.gov/pubmed/19818673
https://www.proquest.com/docview/46449087
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Volume 14
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