Genome-Wide Association Studies of Image Traits Reveal Genetic Architecture of Drought Resistance in Rice
Understanding how plants respond to drought can benefit drought resistance (DR) breeding. Using a non-destructive phenotyping facility, 51 image-based traits (i-traits) for 507 rice accessions were extracted. These i-traits can be used to monitor drought responses and evaluate DR. High heritability...
Saved in:
Published in | Molecular plant Vol. 11; no. 6; pp. 789 - 805 |
---|---|
Main Authors | , , , , , , , , , , , , , , , , |
Format | Journal Article |
Language | English |
Published |
England
Elsevier Inc
04.06.2018
|
Subjects | |
Online Access | Get full text |
Cover
Loading…
Abstract | Understanding how plants respond to drought can benefit drought resistance (DR) breeding. Using a non-destructive phenotyping facility, 51 image-based traits (i-traits) for 507 rice accessions were extracted. These i-traits can be used to monitor drought responses and evaluate DR. High heritability and large variation of these traits was observed under drought stress in the natural population. A genome-wide association study (GWAS) of i-traits and traditional DR traits identified 470 association loci, some containing known DR-related genes. Of these 470 loci, 443 loci (94%) were identified using i-traits, 437 loci (93%) co-localized with previously reported DR-related quantitative trait loci, and 313 loci (66.6%) were reproducibly identified by GWAS in different years. Association networks, established based on GWAS results, revealed hub i-traits and hub loci. This demonstrates the feasibility and necessity of dissecting the complex DR trait into heritable and simple i-traits. As proof of principle, we illustrated the power of this integrated approach to identify previously unreported DR-related genes. OsPP15 was associated with a hub i-trait, and its role in DR was confirmed by genetic transformation experiments. Furthermore, i-traits can be used for DR linkage analyses, and 69 i-trait locus associations were identified by both GWAS and linkage analysis of a recombinant inbred line population. Finally, we confirmed the relevance of i-traits to DR in the field. Our study provides a promising novel approach for the genetic dissection and discovery of causal genes for DR.
A set of highly heritable image traits was identified to monitor dynamic drought responses and to evaluate drought resistance (DR) in rice. GWAS of the image-based and traditional traits revealed a comprehensive genetic architecture of DR in rice. Several image traits are closely correlated to DR in the field and have high potential to be indicative traits in DR breeding. |
---|---|
AbstractList | Understanding how plants respond to drought can benefit drought resistance (DR) breeding. Using a non-destructive phenotyping facility, 51 image-based traits (i-traits) for 507 rice accessions were extracted. These i-traits can be used to monitor drought responses and evaluate DR. High heritability and large variation of these traits was observed under drought stress in the natural population. A genome-wide association study (GWAS) of i-traits and traditional DR traits identified 470 association loci, some containing known DR-related genes. Of these 470 loci, 443 loci (94%) were identified using i-traits, 437 loci (93%) co-localized with previously reported DR-related quantitative trait loci, and 313 loci (66.6%) were reproducibly identified by GWAS in different years. Association networks, established based on GWAS results, revealed hub i-traits and hub loci. This demonstrates the feasibility and necessity of dissecting the complex DR trait into heritable and simple i-traits. As proof of principle, we illustrated the power of this integrated approach to identify previously unreported DR-related genes. OsPP15 was associated with a hub i-trait, and its role in DR was confirmed by genetic transformation experiments. Furthermore, i-traits can be used for DR linkage analyses, and 69 i-trait locus associations were identified by both GWAS and linkage analysis of a recombinant inbred line population. Finally, we confirmed the relevance of i-traits to DR in the field. Our study provides a promising novel approach for the genetic dissection and discovery of causal genes for DR. Understanding how plants respond to drought can benefit drought resistance (DR) breeding. Using a non-destructive phenotyping facility, 51 image-based traits (i-traits) for 507 rice accessions were extracted. These i-traits can be used to monitor drought responses and evaluate DR. High heritability and large variation of these traits was observed under drought stress in the natural population. A genome-wide association study (GWAS) of i-traits and traditional DR traits identified 470 association loci, some containing known DR-related genes. Of these 470 loci, 443 loci (94%) were identified using i-traits, 437 loci (93%) co-localized with previously reported DR-related quantitative trait loci, and 313 loci (66.6%) were reproducibly identified by GWAS in different years. Association networks, established based on GWAS results, revealed hub i-traits and hub loci. This demonstrates the feasibility and necessity of dissecting the complex DR trait into heritable and simple i-traits. As proof of principle, we illustrated the power of this integrated approach to identify previously unreported DR-related genes. OsPP15 was associated with a hub i-trait, and its role in DR was confirmed by genetic transformation experiments. Furthermore, i-traits can be used for DR linkage analyses, and 69 i-trait locus associations were identified by both GWAS and linkage analysis of a recombinant inbred line population. Finally, we confirmed the relevance of i-traits to DR in the field. Our study provides a promising novel approach for the genetic dissection and discovery of causal genes for DR. A set of highly heritable image traits was identified to monitor dynamic drought responses and to evaluate drought resistance (DR) in rice. GWAS of the image-based and traditional traits revealed a comprehensive genetic architecture of DR in rice. Several image traits are closely correlated to DR in the field and have high potential to be indicative traits in DR breeding. |
Author | Hu, Honghong Yang, Wanneng Tu, Haifu Luo, Lijun Feng, Hui Ma, Xiaosong Chang, Yu Huang, Chenglong Guo, Zilong Yang, Peng Chen, Guoxing Zhao, Hu Liu, Qian Liu, Hongyan Xiong, Lizhong Xiong, Fang Jiang, Ni |
Author_xml | – sequence: 1 givenname: Zilong surname: Guo fullname: Guo, Zilong organization: National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan 430070, China – sequence: 2 givenname: Wanneng surname: Yang fullname: Yang, Wanneng email: ywn@mail.hzau.edu.cn organization: National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan 430070, China – sequence: 3 givenname: Yu surname: Chang fullname: Chang, Yu organization: National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan 430070, China – sequence: 4 givenname: Xiaosong surname: Ma fullname: Ma, Xiaosong organization: Shanghai Agrobiological Gene Center, Shanghai 201106, China – sequence: 5 givenname: Haifu surname: Tu fullname: Tu, Haifu organization: National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan 430070, China – sequence: 6 givenname: Fang surname: Xiong fullname: Xiong, Fang organization: National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan 430070, China – sequence: 7 givenname: Ni surname: Jiang fullname: Jiang, Ni organization: Britton Chance Center for Biomedical Photonics, Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, Wuhan 430074, China – sequence: 8 givenname: Hui surname: Feng fullname: Feng, Hui organization: Hubei Key Laboratory of Agricultural Bioinformatics, Huazhong Agricultural University, Wuhan 430070, China – sequence: 9 givenname: Chenglong surname: Huang fullname: Huang, Chenglong organization: College of Engineering, Huazhong Agricultural University, Wuhan 430070, China – sequence: 10 givenname: Peng surname: Yang fullname: Yang, Peng organization: College of Engineering, Huazhong Agricultural University, Wuhan 430070, China – sequence: 11 givenname: Hu surname: Zhao fullname: Zhao, Hu organization: National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan 430070, China – sequence: 12 givenname: Guoxing surname: Chen fullname: Chen, Guoxing organization: MOA Key Laboratory of Crop Ecophysiology and Farming System in the Middle Reaches of the Yangtze River, Huazhong Agricultural University, Wuhan 430070, China – sequence: 13 givenname: Hongyan surname: Liu fullname: Liu, Hongyan organization: Shanghai Agrobiological Gene Center, Shanghai 201106, China – sequence: 14 givenname: Lijun surname: Luo fullname: Luo, Lijun organization: Shanghai Agrobiological Gene Center, Shanghai 201106, China – sequence: 15 givenname: Honghong surname: Hu fullname: Hu, Honghong organization: National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan 430070, China – sequence: 16 givenname: Qian surname: Liu fullname: Liu, Qian organization: Britton Chance Center for Biomedical Photonics, Wuhan National Laboratory for Optoelectronics, Huazhong University of Science and Technology, Wuhan 430074, China – sequence: 17 givenname: Lizhong surname: Xiong fullname: Xiong, Lizhong email: lizhongx@mail.hzau.edu.cn organization: National Key Laboratory of Crop Genetic Improvement and National Center of Plant Gene Research (Wuhan), Huazhong Agricultural University, Wuhan 430070, China |
BackLink | https://www.ncbi.nlm.nih.gov/pubmed/29614319$$D View this record in MEDLINE/PubMed |
BookMark | eNp9kMtKxDAUhoMo3l_AhWTppjVJ27QFN4N3EAQvuAxpckbP0DZjkg749mYYdenqPyHff-B8B2R7dCMQcsJZzhmX54t8cP0yF4w3OSvyFFtkn9eVyNpG1ttplnWZCVaJPXIQwoIxyRpZ7JI90UpeFrzdJ3gLoxsge0MLdBaCM6gjupE-x8kiBOrm9H7Q70BfvMYY6BOsQPc01SCioTNvPjCCiZOHNXvl3fT-ERMWMEQ9GqA40ic0cER25roPcPyTh-T15vrl8i57eLy9v5w9ZKbiVcxEYbSuK24kM50uWZqha6FqpS1lBS3UYHVdQtnZFkTZdEX6q4yAOefpaYtDcrbZu_Tuc4IQ1YDBQN_rEdwUlGCC1wVrmiahYoMa70LwMFdLj4P2X4oztVasFmqtWK0VK1aoFKl0-rN_6gawf5Vfpwm42ACQrlwheBUMQjJh0SdRyjr8b_83FX-Pvw |
CitedBy_id | crossref_primary_10_1007_s11427_019_1682_6 crossref_primary_10_1016_j_tplants_2021_07_015 crossref_primary_10_3390_microorganisms11020331 crossref_primary_10_1111_nph_17580 crossref_primary_10_1007_s00122_023_04303_3 crossref_primary_10_1007_s00122_020_03691_0 crossref_primary_10_1007_s00122_021_03978_w crossref_primary_10_1007_s11033_022_08036_2 crossref_primary_10_1016_j_plantsci_2024_112129 crossref_primary_10_1016_j_cpb_2024_100331 crossref_primary_10_1007_s11032_021_01223_2 crossref_primary_10_3390_su142114339 crossref_primary_10_1093_jxb_ery373 crossref_primary_10_1002_pld3_413 crossref_primary_10_1016_j_cj_2021_03_015 crossref_primary_10_3389_fbioe_2024_1338276 crossref_primary_10_13005_bbra_2988 crossref_primary_10_1007_s11427_021_2131_6 crossref_primary_10_1111_pbi_13431 crossref_primary_10_1016_j_ncrops_2024_100029 crossref_primary_10_1016_j_tplants_2023_07_005 crossref_primary_10_3389_fpls_2018_01249 crossref_primary_10_34133_plantphenomics_0200 crossref_primary_10_1002_csc2_21019 crossref_primary_10_1016_j_ygeno_2021_03_016 crossref_primary_10_3389_fpls_2022_857149 crossref_primary_10_1007_s11032_019_1073_5 crossref_primary_10_1016_j_isci_2021_102846 crossref_primary_10_1111_pce_14656 crossref_primary_10_1016_j_stress_2022_100058 crossref_primary_10_1016_j_cj_2023_05_002 crossref_primary_10_1093_g3journal_jkae026 crossref_primary_10_1016_j_jia_2024_03_079 crossref_primary_10_3389_fpls_2023_1223782 crossref_primary_10_1016_j_xplc_2021_100165 crossref_primary_10_1093_jxb_erad316 crossref_primary_10_1016_j_copbio_2020_01_010 crossref_primary_10_3390_plants11192663 crossref_primary_10_1016_j_tplants_2022_12_010 crossref_primary_10_3389_fbinf_2022_1027457 crossref_primary_10_1111_pce_13577 crossref_primary_10_1134_S1021443722010095 crossref_primary_10_1016_j_jia_2023_07_021 crossref_primary_10_1016_j_molp_2022_06_003 crossref_primary_10_1111_pbi_13100 crossref_primary_10_1016_j_xplc_2021_100209 crossref_primary_10_1186_s13059_021_02377_0 crossref_primary_10_1016_j_xplc_2022_100344 crossref_primary_10_1186_s12284_018_0258_6 crossref_primary_10_1093_aob_mcz041 crossref_primary_10_1007_s11032_019_0980_9 crossref_primary_10_1016_j_molp_2021_05_001 crossref_primary_10_1007_s11032_019_1057_5 crossref_primary_10_1111_pbi_13509 crossref_primary_10_3389_fpls_2018_01223 crossref_primary_10_1016_j_cj_2020_02_003 crossref_primary_10_1016_j_ocsci_2021_01_001 crossref_primary_10_1016_j_ocsci_2021_01_002 crossref_primary_10_3390_genes14071461 crossref_primary_10_9787_PBB_2021_9_2_104 crossref_primary_10_1098_rsob_210353 crossref_primary_10_1186_s12284_024_00684_1 crossref_primary_10_1016_j_molp_2023_07_009 crossref_primary_10_1007_s00122_023_04283_4 crossref_primary_10_1016_j_molp_2022_03_009 crossref_primary_10_1017_S1479262121000551 crossref_primary_10_15446_abc_v28n3_98891 crossref_primary_10_1111_jipb_13451 crossref_primary_10_1111_nph_18068 crossref_primary_10_1016_j_molp_2021_11_007 crossref_primary_10_3389_fpls_2019_01682 crossref_primary_10_3390_agronomy10050621 crossref_primary_10_3389_fpls_2021_772708 crossref_primary_10_1007_s10681_022_03088_8 crossref_primary_10_1093_jxb_erac242 crossref_primary_10_1016_j_plantsci_2023_111624 crossref_primary_10_3390_agronomy14020279 crossref_primary_10_1111_pce_14485 crossref_primary_10_3390_horticulturae9010001 crossref_primary_10_3389_fpls_2019_00982 crossref_primary_10_1007_s00122_019_03473_3 crossref_primary_10_1016_j_molp_2020_01_008 crossref_primary_10_1186_s13007_022_00970_3 crossref_primary_10_3390_genes12050718 crossref_primary_10_3390_plants12132549 crossref_primary_10_7831_ras_8_0_28 crossref_primary_10_1016_j_compag_2021_106001 crossref_primary_10_1002_bies_202100109 crossref_primary_10_1007_s11427_021_2024_0 crossref_primary_10_1007_s44154_021_00011_4 crossref_primary_10_1016_j_molp_2022_11_016 crossref_primary_10_1111_ppl_14349 crossref_primary_10_1038_s41467_024_46754_2 crossref_primary_10_1016_j_jplph_2022_153657 crossref_primary_10_1093_plphys_kiab431 crossref_primary_10_3389_fpls_2023_1214801 crossref_primary_10_3389_fpls_2021_752730 crossref_primary_10_1038_s41467_022_31844_w crossref_primary_10_1007_s00425_020_03436_9 crossref_primary_10_1016_j_jare_2021_05_002 crossref_primary_10_1093_plcell_koac248 crossref_primary_10_1007_s44154_024_00150_4 crossref_primary_10_3389_fpls_2021_563953 crossref_primary_10_3389_fpls_2023_1298083 crossref_primary_10_3390_agriculture14050723 crossref_primary_10_1111_pbr_13119 crossref_primary_10_1111_tpj_15619 crossref_primary_10_1111_ppl_13547 crossref_primary_10_1111_tpj_14139 crossref_primary_10_1371_journal_pone_0225383 crossref_primary_10_3389_fpls_2021_678862 crossref_primary_10_1016_j_cj_2022_09_015 crossref_primary_10_3390_ijms23031065 |
Cites_doi | 10.1093/nar/gks1105 10.1093/jxb/erq201 10.1093/nar/gkh105 10.1007/s00439-011-1118-2 10.1073/pnas.1120813109 10.1126/science.8197457 10.1016/0378-3774(83)90084-7 10.1007/s10529-008-9811-5 10.1016/j.molp.2015.02.014 10.1038/ncomms6087 10.1093/nar/gkv253 10.1016/j.pbi.2013.02.003 10.1038/srep02442 10.1007/s00122-005-0040-1 10.1105/tpc.114.129601 10.1038/ng.3007 10.1104/pp.113.226019 10.1093/nar/gku894 10.1071/FP11101 10.1371/journal.pone.0116646 10.1038/ng.1018 10.1093/jxb/erv405 10.1007/s00018-014-1767-0 10.1126/science.1183700 10.1073/pnas.1515919112 10.1046/j.1365-313X.1994.6020271.x 10.1104/pp.103.035527 10.1101/gr.1239303 10.1007/s12284-010-9041-z 10.1093/jxb/erv176 10.1038/nmeth.1681 10.3835/plantgenome2016.07.0064 10.1146/annurev-arplant-042809-112209 10.1038/ncomms10527 10.1023/A:1014805625790 10.1086/519795 10.1073/pnas.0708013104 10.1038/ng.695 10.1146/annurev-arplant-050213-035715 10.1073/pnas.1705884114 10.1105/tpc.15.00910 10.1038/nmeth.1318 10.1038/ng.2484 10.1534/genetics.105.045062 10.1146/annurev-arplant-050213-040000 10.1093/bioinformatics/bth457 10.1111/pce.12516 10.1038/517006a 10.1093/jxb/erv100 10.1111/pce.12800 10.1038/ng.3636 10.1007/s00122-014-2377-9 10.1186/1471-2164-9-516 10.1104/pp.113.224014 10.1038/ncomms1467 10.1007/s004380051120 10.1371/journal.pone.0111988 10.1080/10473289.2007.10465292 10.1007/s00122-005-0111-3 10.1016/j.plaphy.2011.09.012 |
ContentType | Journal Article |
Copyright | 2018 The Author Copyright © 2018 The Author. Published by Elsevier Inc. All rights reserved. |
Copyright_xml | – notice: 2018 The Author – notice: Copyright © 2018 The Author. Published by Elsevier Inc. All rights reserved. |
DBID | 6I. AAFTH CGR CUY CVF ECM EIF NPM AAYXX CITATION 7X8 |
DOI | 10.1016/j.molp.2018.03.018 |
DatabaseName | ScienceDirect Open Access Titles Elsevier:ScienceDirect:Open Access Medline MEDLINE MEDLINE (Ovid) MEDLINE MEDLINE PubMed CrossRef MEDLINE - Academic |
DatabaseTitle | MEDLINE Medline Complete MEDLINE with Full Text PubMed MEDLINE (Ovid) CrossRef MEDLINE - Academic |
DatabaseTitleList | MEDLINE MEDLINE - Academic |
Database_xml | – sequence: 1 dbid: NPM name: PubMed url: https://proxy.k.utb.cz/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed sourceTypes: Index Database – sequence: 2 dbid: EIF name: MEDLINE url: https://proxy.k.utb.cz/login?url=https://www.webofscience.com/wos/medline/basic-search sourceTypes: Index Database |
DeliveryMethod | fulltext_linktorsrc |
Discipline | Botany |
EISSN | 1752-9867 |
EndPage | 805 |
ExternalDocumentID | 10_1016_j_molp_2018_03_018 29614319 S1674205218301266 |
Genre | Research Support, Non-U.S. Gov't Journal Article |
GroupedDBID | --- --M .2P .I3 0R~ 123 2WC 4.4 457 53G 6I. 7-5 70D 8P~ AABVA AACTN AAEDW AAFTH AAIAV AAIKJ AAIYJ AAKOC AALRI AAOAW AATLK AAVLN AAXUO ABGRD ABJNI ABMAC ABNKS ABVKL ABYKQ ABZBJ ACDAQ ACGFS ACPRK ACRLP ADBBV ADEYI ADEZE ADFTL ADOCK ADZTZ AEBSH AEGPL AEKER AENEX AEXQZ AFKWA AFRAH AFTJW AFXIZ AGKEF AGUBO AHMBA AHXPO AIEXJ AIJHB AIKHN AITUG AJBFU AJOXV AKHUL ALMA_UNASSIGNED_HOLDINGS AMFUW AMRAJ AXJTR BKOJK BLXMC CS3 CZ4 DU5 E3Z EBS EE~ EFJIC EFLBG EJD ESX F5P F9B FDB FIRID FYGXN GBLVA H5~ HW0 HZ~ IOX IXB KOM M-Z M41 M49 N9A NCXOZ NU- O9- OAUVE OK1 P2P PQQKQ Q1. RCE RD5 ROL RW1 RXO SPCBC SSA SSZ T5K TR2 W8F X7H ~91 ~G- 0SF AAEDT AAHBH AAMRU AAQFI AAXKI ADVLN AKRWK CGR CUY CVF ECM EIF NPM 1RT AAYXX ABFNM ABXDB AGHFR CITATION CKLRP CW9 EDH H13 O0~ OVD TEORI 7X8 |
ID | FETCH-LOGICAL-c515t-23caa751c60cba40a75eb9e596d465e9e7eda74e4bd9e248b3e595c2ef11248d3 |
IEDL.DBID | ABVKL |
ISSN | 1674-2052 |
IngestDate | Fri Aug 16 11:23:32 EDT 2024 Thu Sep 26 17:35:43 EDT 2024 Wed Oct 16 00:50:27 EDT 2024 Fri Feb 23 02:27:17 EST 2024 |
IsDoiOpenAccess | true |
IsOpenAccess | true |
IsPeerReviewed | true |
IsScholarly | true |
Issue | 6 |
Keywords | drought response drought resistance GWAS rice image-based trait natural variation |
Language | English |
License | This article is made available under the Elsevier license. Copyright © 2018 The Author. Published by Elsevier Inc. All rights reserved. |
LinkModel | DirectLink |
MergedId | FETCHMERGED-LOGICAL-c515t-23caa751c60cba40a75eb9e596d465e9e7eda74e4bd9e248b3e595c2ef11248d3 |
Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 |
OpenAccessLink | https://www.sciencedirect.com/science/article/pii/S1674205218301266 |
PMID | 29614319 |
PQID | 2021730888 |
PQPubID | 23479 |
PageCount | 17 |
ParticipantIDs | proquest_miscellaneous_2021730888 crossref_primary_10_1016_j_molp_2018_03_018 pubmed_primary_29614319 elsevier_sciencedirect_doi_10_1016_j_molp_2018_03_018 |
PublicationCentury | 2000 |
PublicationDate | 2018-06-04 |
PublicationDateYYYYMMDD | 2018-06-04 |
PublicationDate_xml | – month: 06 year: 2018 text: 2018-06-04 day: 04 |
PublicationDecade | 2010 |
PublicationPlace | England |
PublicationPlace_xml | – name: England |
PublicationTitle | Molecular plant |
PublicationTitleAlternate | Mol Plant |
PublicationYear | 2018 |
Publisher | Elsevier Inc |
Publisher_xml | – name: Elsevier Inc |
References | Duggal, Gillanders, Holmes, Bailey-Wilson (bib18) 2008; 9 Wang, Basten, Zeng (bib47) 2010 Yue, Xue, Xiong, Yu, Luo, Cui, Jin, Xing, Zhang (bib57) 2006; 172 Wang, Xie, Xing, Yan, Meng, Li, Fu, Xu, Lian, Yu (bib48) 2015; 8 Verslues, Lasky, Juenger, Liu, Kumar (bib46) 2014; 164 Campbell, Du, Liu, Brien, Berger, Zhang, Walia (bib10) 2017; 10 Cai, Jiang, Ye, Chu, Xu, Zhang, Zhu (bib9) 2015; 10 Huang, Wei, Sang, Zhao, Feng, Zhao, Li, Zhu, Lu, Zhang (bib28) 2010; 42 Purcell, Neale, Todd-Brown, Thomas, Ferreira, Bender, Maller, Sklar, de Bakker, Daly (bib40) 2007; 81 Deng, Wang, Liu, Cheng, Xue (bib17) 2014; 9 Shannon, Markiel, Ozier, Baliga, Wang, Ramage, Amin, Schwikowski, Ideker (bib44) 2003; 13 Lanceras, Pantuwan, Jongdee, Toojinda (bib32) 2004; 135 Xing, Zhang (bib52) 2010; 61 Blum (bib6) 2011; 38 Wang, Wang, Liu, Ferjani, Li, Yan, Yang, Qin (bib49) 2016; 48 Huang, Zhao, Wei, Li, Wang, Zhao, Li, Guo, Deng, Zhu (bib29) 2011; 44 Hu, Xiong (bib26) 2014; 65 Chen, Meng, Zhang, Xia, Wang (bib11) 2008; 30 Yue, Xiong, Xue, Xing, Luo, Xu (bib56) 2005; 111 Busemeyer, Ruckelshausen, Moller, Melchinger, Alheit, Maurer, Hahn, Weissmann, Reif, Wurschum (bib8) 2013; 3 Neumann, Klukas, Friedel, Rischbeck, Chen, Entzian, Stein, Graner, Kilian (bib38) 2015; 38 Chen, Gao, Xie, Gong, Lu, Wang, Li, Liu, Zhang, Dong (bib13) 2014; 46 Lee, Oh, Yang, Shin, Hwang, Kim, Kim, Shim, Shim, Ronald (bib33) 2015; 43 Li, Peng, Yang, Wang, Fu, Wang, Han, Chai, Guo, Yang (bib35) 2013; 45 Hiei, Ohta, Komari, Kumashiro (bib25) 1994; 6 Tester, Langridge (bib45) 2010; 327 Blum (bib7) 2017; 40 Fang, Xiong (bib20) 2015; 72 Zou, Mei, Liu, Liu, Hu, Yu, Li, Wu, Luo (bib61) 2005; 112 Meyer, Leube, Grill (bib37) 1994; 264 Yang, Guo, Huang, Wang, Jiang, Feng, Chen, Liu, Xiong (bib54) 2015; 66 Zhao, Tung, Eizenga, Wright, Ali, Price, Norton, Islam, Reynolds, Mezey (bib59) 2011; 2 Rosenow, Quiseberry, Wendt, Clark (bib42) 1983; 7 Ruiz, Rouard, Raboin, Lartaud, Lagoda, Courtois (bib43) 2004; 32 Johnson, Cummins, Lim, Slabas, Knight (bib30) 2015; 66 Xie, Wang, Yuan, Yao, Lyu, Zhao, Yang, Li, Zhang, Yuan (bib51) 2015; 112 Barrett, Fry, Maller, Daly (bib3) 2005; 21 Alam, Mace, van Oosterom, Cruickshank, Hunt, Hammer, Jordan (bib1) 2014; 127 Gibson, Young, Chuang, Venter, Hutchison, Smith (bib22) 2009; 6 Huang, Han (bib27) 2014; 65 Kalladan, Lasky, Chang, Sharma, Juenger, Verslues (bib31) 2017; 114 Yonemaru, Yamamoto, Fukuoka, Uga, Hori, Yano (bib55) 2010; 3 Zhao, Yao, Ouyang, Yang, Wang, Lian, Xing, Chen, Xie (bib60) 2015; 43 Fukao, Xiong (bib21) 2013; 16 Yang, Guo, Huang, Duan, Chen, Jiang, Fang, Feng, Xie, Lian (bib53) 2014; 5 Bechtold, Penfold, Jenkins, Legaie, Moore, Lawson, Matthews, Vialet-Chabrand, Baxter, Subramaniam (bib4) 2016; 28 Hallmark, Souleyrette, Lamptey (bib23) 2007; 57 Chen, Neumann, Friedel, Kilian, Chen, Altmann, Klukas (bib12) 2014; 26 Cui, Zhang, Zhang, Xu, Zhu, Duan, Wu (bib16) 2011; 49 Hamelin, Sempere, Jouffe, Ruiz (bib24) 2013; 41 Lippert, Listgarten, Liu, Kadie, Davidson, Heckerman (bib36) 2011; 8 Zhang (bib58) 2007; 104 Crasta, Xu, Rosenow, Mullet, Nguyen (bib14) 1999; 262 Riedelsheimer, Lisec, Czedik-Eysenberg, Sulpice, Flis, Grieder, Altmann, Stitt, Willmitzer, Melchinger (bib41) 2012; 109 Eliasson (bib19) 2015; 517 Price, Townend, Jones, Audebert, Courtois (bib39) 2002; 48 Xiao, Cheng, Li, Xiao, Xu, Wang (bib50) 2013; 163 Bac-Molenaar, Vreugdenhil, Granier, Keurentjes (bib2) 2015; 66 Crowell, Korniliev, Falcao, Ismail, Gregorio, Mezey, McCouch (bib15) 2016; 7 Li, Yeung, Cherny, Sham (bib34) 2012; 131 Berger, Parent, Tester (bib5) 2010; 61 Kalladan (10.1016/j.molp.2018.03.018_bib31) 2017; 114 Meyer (10.1016/j.molp.2018.03.018_bib37) 1994; 264 Yonemaru (10.1016/j.molp.2018.03.018_bib55) 2010; 3 Duggal (10.1016/j.molp.2018.03.018_bib18) 2008; 9 Xing (10.1016/j.molp.2018.03.018_bib52) 2010; 61 Alam (10.1016/j.molp.2018.03.018_bib1) 2014; 127 Riedelsheimer (10.1016/j.molp.2018.03.018_bib41) 2012; 109 Chen (10.1016/j.molp.2018.03.018_bib11) 2008; 30 Wang (10.1016/j.molp.2018.03.018_bib49) 2016; 48 Zhao (10.1016/j.molp.2018.03.018_bib59) 2011; 2 Tester (10.1016/j.molp.2018.03.018_bib45) 2010; 327 Hu (10.1016/j.molp.2018.03.018_bib26) 2014; 65 Huang (10.1016/j.molp.2018.03.018_bib28) 2010; 42 Zou (10.1016/j.molp.2018.03.018_bib61) 2005; 112 Busemeyer (10.1016/j.molp.2018.03.018_bib8) 2013; 3 Chen (10.1016/j.molp.2018.03.018_bib12) 2014; 26 Ruiz (10.1016/j.molp.2018.03.018_bib43) 2004; 32 Purcell (10.1016/j.molp.2018.03.018_bib40) 2007; 81 Rosenow (10.1016/j.molp.2018.03.018_bib42) 1983; 7 Xie (10.1016/j.molp.2018.03.018_bib51) 2015; 112 Hamelin (10.1016/j.molp.2018.03.018_bib24) 2013; 41 Fukao (10.1016/j.molp.2018.03.018_bib21) 2013; 16 Barrett (10.1016/j.molp.2018.03.018_bib3) 2005; 21 Xiao (10.1016/j.molp.2018.03.018_bib50) 2013; 163 Yang (10.1016/j.molp.2018.03.018_bib53) 2014; 5 Crasta (10.1016/j.molp.2018.03.018_bib14) 1999; 262 Johnson (10.1016/j.molp.2018.03.018_bib30) 2015; 66 Fang (10.1016/j.molp.2018.03.018_bib20) 2015; 72 Lippert (10.1016/j.molp.2018.03.018_bib36) 2011; 8 Huang (10.1016/j.molp.2018.03.018_bib27) 2014; 65 Bac-Molenaar (10.1016/j.molp.2018.03.018_bib2) 2015; 66 Cui (10.1016/j.molp.2018.03.018_bib16) 2011; 49 Deng (10.1016/j.molp.2018.03.018_bib17) 2014; 9 Li (10.1016/j.molp.2018.03.018_bib35) 2013; 45 Blum (10.1016/j.molp.2018.03.018_bib6) 2011; 38 Wang (10.1016/j.molp.2018.03.018_bib48) 2015; 8 Wang (10.1016/j.molp.2018.03.018_bib47) 2010 Gibson (10.1016/j.molp.2018.03.018_bib22) 2009; 6 Lee (10.1016/j.molp.2018.03.018_bib33) 2015; 43 Li (10.1016/j.molp.2018.03.018_bib34) 2012; 131 Yue (10.1016/j.molp.2018.03.018_bib57) 2006; 172 Berger (10.1016/j.molp.2018.03.018_bib5) 2010; 61 Zhang (10.1016/j.molp.2018.03.018_bib58) 2007; 104 Hallmark (10.1016/j.molp.2018.03.018_bib23) 2007; 57 Huang (10.1016/j.molp.2018.03.018_bib29) 2011; 44 Bechtold (10.1016/j.molp.2018.03.018_bib4) 2016; 28 Price (10.1016/j.molp.2018.03.018_bib39) 2002; 48 Hiei (10.1016/j.molp.2018.03.018_bib25) 1994; 6 Blum (10.1016/j.molp.2018.03.018_bib7) 2017; 40 Lanceras (10.1016/j.molp.2018.03.018_bib32) 2004; 135 Cai (10.1016/j.molp.2018.03.018_bib9) 2015; 10 Zhao (10.1016/j.molp.2018.03.018_bib60) 2015; 43 Yue (10.1016/j.molp.2018.03.018_bib56) 2005; 111 Shannon (10.1016/j.molp.2018.03.018_bib44) 2003; 13 Yang (10.1016/j.molp.2018.03.018_bib54) 2015; 66 Crowell (10.1016/j.molp.2018.03.018_bib15) 2016; 7 Chen (10.1016/j.molp.2018.03.018_bib13) 2014; 46 Neumann (10.1016/j.molp.2018.03.018_bib38) 2015; 38 Verslues (10.1016/j.molp.2018.03.018_bib46) 2014; 164 Campbell (10.1016/j.molp.2018.03.018_bib10) 2017; 10 Eliasson (10.1016/j.molp.2018.03.018_bib19) 2015; 517 |
References_xml | – volume: 43 start-page: W122 year: 2015 end-page: W127 ident: bib33 article-title: RiceNet v2: an improved network prioritization server for rice genes publication-title: Nucleic Acids Res. contributor: fullname: Ronald – volume: 6 start-page: 343 year: 2009 end-page: 345 ident: bib22 article-title: Enzymatic assembly of DNA molecules up to several hundred kilobases publication-title: Nat. Methods contributor: fullname: Smith – volume: 3 start-page: 194 year: 2010 end-page: 203 ident: bib55 article-title: Q-TARO: QTL annotation rice online database publication-title: Rice contributor: fullname: Yano – volume: 42 start-page: 961 year: 2010 end-page: 967 ident: bib28 article-title: Genome-wide association studies of 14 agronomic traits in rice landraces publication-title: Nat. Genet. contributor: fullname: Zhang – volume: 21 start-page: 263 year: 2005 end-page: 265 ident: bib3 article-title: Haploview: analysis and visualization of LD and haplotype maps publication-title: Bioinformatics contributor: fullname: Daly – volume: 57 start-page: 4 year: 2007 end-page: 13 ident: bib23 article-title: Use of n-fold cross-validation to evaluate three methods to calculate heavy truck annual average daily traffic and vehicle miles traveled publication-title: J. Air Waste Manag. Assoc. contributor: fullname: Lamptey – volume: 65 start-page: 531 year: 2014 end-page: 551 ident: bib27 article-title: Natural variations and genome-wide association studies in crop plants publication-title: Annu. Rev. Plant Biol. contributor: fullname: Han – volume: 327 start-page: 818 year: 2010 end-page: 822 ident: bib45 article-title: Breeding technologies to increase crop production in a changing world publication-title: Science contributor: fullname: Langridge – volume: 112 start-page: E5411 year: 2015 end-page: E5419 ident: bib51 article-title: Breeding signatures of rice improvement revealed by a genomic variation map from a large germplasm collection publication-title: Proc. Natl. Acad. Sci. USA contributor: fullname: Yuan – volume: 131 start-page: 747 year: 2012 end-page: 756 ident: bib34 article-title: Evaluating the effective numbers of independent tests and significant p-value thresholds in commercial genotyping arrays and public imputation reference datasets publication-title: Hum. Genet. contributor: fullname: Sham – volume: 45 start-page: 43 year: 2013 end-page: 50 ident: bib35 article-title: Genome-wide association study dissects the genetic architecture of oil biosynthesis in maize kernels publication-title: Nat. Genet. contributor: fullname: Yang – volume: 28 start-page: 345 year: 2016 end-page: 366 ident: bib4 article-title: Time-series transcriptomics reveals that AGAMOUS-LIKE22 affects primary metabolism and developmental processes in drought-stressed publication-title: Plant Cell contributor: fullname: Subramaniam – volume: 9 start-page: e111988 year: 2014 ident: bib17 article-title: HemI: A toolkit for illustrating heatmaps publication-title: PLoS One contributor: fullname: Xue – volume: 10 start-page: e0116646 year: 2015 ident: bib9 article-title: A key ABA catabolic gene, OsABA8ox3, is involved in drought stress resistance in rice publication-title: PLoS One contributor: fullname: Zhu – volume: 16 start-page: 196 year: 2013 end-page: 204 ident: bib21 article-title: Genetic mechanisms conferring adaptation to submergence and drought in rice: simple or complex? publication-title: Curr. Opin. Plant Biol. contributor: fullname: Xiong – volume: 3 start-page: 2442 year: 2013 ident: bib8 article-title: Precision phenotyping of biomass accumulation in triticale reveals temporal genetic patterns of regulation publication-title: Sci. Rep. contributor: fullname: Wurschum – volume: 46 start-page: 714 year: 2014 end-page: 721 ident: bib13 article-title: Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism publication-title: Nat. Genet. contributor: fullname: Dong – volume: 40 start-page: 4 year: 2017 end-page: 10 ident: bib7 article-title: Osmotic adjustment is a prime drought stress adaptive engine in support of plant production publication-title: Plant Cell Environ. contributor: fullname: Blum – volume: 66 start-page: 5605 year: 2015 end-page: 5615 ident: bib54 article-title: Genome-wide association study of rice ( publication-title: J. Exp. Bot. contributor: fullname: Xiong – volume: 109 start-page: 8872 year: 2012 end-page: 8877 ident: bib41 article-title: Genome-wide association mapping of leaf metabolic profiles for dissecting complex traits in maize publication-title: Proc. Natl. Acad. Sci. USA contributor: fullname: Melchinger – volume: 48 start-page: 683 year: 2002 end-page: 695 ident: bib39 article-title: Mapping QTLs associated with drought avoidance in upland rice grown in the Philippines and West Africa publication-title: Plant Mol. Biol. contributor: fullname: Courtois – volume: 61 start-page: 3519 year: 2010 end-page: 3528 ident: bib5 article-title: High-throughput shoot imaging to study drought responses publication-title: J. Exp. Bot. contributor: fullname: Tester – volume: 262 start-page: 579 year: 1999 end-page: 588 ident: bib14 article-title: Mapping of post-flowering drought resistance traits in grain sorghum: association between QTLs influencing premature senescence and maturity publication-title: Mol. Gen. Genet. contributor: fullname: Nguyen – volume: 41 start-page: D1172 year: 2013 end-page: D1175 ident: bib24 article-title: TropGeneDB, the multi-tropical crop information system updated and extended publication-title: Nucleic Acids Res. contributor: fullname: Ruiz – volume: 32 start-page: D364 year: 2004 end-page: D367 ident: bib43 article-title: TropGENE-DB, a multi-tropical crop information system publication-title: Nucleic Acids Res. contributor: fullname: Courtois – volume: 48 start-page: 1233 year: 2016 end-page: 1241 ident: bib49 article-title: Genetic variation in publication-title: Nat. Genet. contributor: fullname: Qin – volume: 172 start-page: 1213 year: 2006 end-page: 1228 ident: bib57 article-title: Genetic basis of drought resistance at reproductive stage in rice: separation of drought tolerance from drought avoidance publication-title: Genetics contributor: fullname: Zhang – volume: 264 start-page: 1452 year: 1994 end-page: 1455 ident: bib37 article-title: A protein phosphatase 2C involved in ABA signal transduction in publication-title: Science contributor: fullname: Grill – volume: 7 start-page: 207 year: 1983 end-page: 222 ident: bib42 article-title: Drought tolerant sorghum and cotton germplasm publication-title: Agr. Water Manag. contributor: fullname: Clark – volume: 81 start-page: 559 year: 2007 end-page: 575 ident: bib40 article-title: PLINK: a tool set for whole-genome association and population-based linkage analyses publication-title: Am. J. Hum. Genet. contributor: fullname: Daly – volume: 8 start-page: 833 year: 2011 end-page: 835 ident: bib36 article-title: FaST linear mixed models for genome-wide association studies publication-title: Nat. Methods contributor: fullname: Heckerman – volume: 164 start-page: 144 year: 2014 end-page: 159 ident: bib46 article-title: Genome-wide association mapping combined with reverse genetics identifies new effectors of low water potential-induced proline accumulation in publication-title: Plant Physiol. contributor: fullname: Kumar – volume: 66 start-page: 5567 year: 2015 end-page: 5580 ident: bib2 article-title: Genome-wide association mapping of growth dynamics detects time-specific and general quantitative trait loci publication-title: J. Exp. Bot. contributor: fullname: Keurentjes – volume: 10 year: 2017 ident: bib10 article-title: A comprehensive image-based phenomic analysis reveals the complex genetic architecture of shoot growth dynamics in rice ( publication-title: Plant Genome contributor: fullname: Walia – volume: 66 start-page: 7061 year: 2015 end-page: 7073 ident: bib30 article-title: Transcriptomic analysis comparing stay-green and senescent publication-title: J. Exp. Bot. contributor: fullname: Knight – volume: 112 start-page: 106 year: 2005 end-page: 113 ident: bib61 article-title: Grain yield responses to moisture regimes in a rice population: association among traits and genetic markers publication-title: Theor. Appl. Genet. contributor: fullname: Luo – volume: 26 start-page: 4636 year: 2014 end-page: 4655 ident: bib12 article-title: Dissecting the phenotypic components of crop plant growth and drought responses based on high-throughput image analysis publication-title: Plant Cell contributor: fullname: Klukas – volume: 13 start-page: 2498 year: 2003 end-page: 2504 ident: bib44 article-title: Cytoscape: a software environment for integrated models of biomolecular interaction networks publication-title: Genome Res. contributor: fullname: Ideker – volume: 9 start-page: 516 year: 2008 ident: bib18 article-title: Establishing an adjusted p-value threshold to control the family-wide type 1 error in genome wide association studies publication-title: BMC Genomics contributor: fullname: Bailey-Wilson – volume: 61 start-page: 421 year: 2010 end-page: 442 ident: bib52 article-title: Genetic and molecular bases of rice yield publication-title: Annu. Rev. Plant Biol. contributor: fullname: Zhang – volume: 5 start-page: 5087 year: 2014 ident: bib53 article-title: Combining high-throughput phenotyping and genome-wide association studies to reveal natural genetic variation in rice publication-title: Nat. Commun. contributor: fullname: Lian – volume: 43 start-page: D1018 year: 2015 end-page: D1022 ident: bib60 article-title: RiceVarMap: a comprehensive database of rice genomic variations publication-title: Nucleic Acids Res. contributor: fullname: Xie – volume: 163 start-page: 1868 year: 2013 end-page: 1882 ident: bib50 article-title: Rice WRKY13 regulates cross talk between abiotic and biotic stress signaling pathways by selective binding to different cis-elements publication-title: Plant Physiol. contributor: fullname: Wang – year: 2010 ident: bib47 article-title: Windows QTL Cartographer 2.5 contributor: fullname: Zeng – volume: 38 start-page: 753 year: 2011 end-page: 757 ident: bib6 article-title: Drought resistance—is it really a complex trait? publication-title: Funct. Plant Biol. contributor: fullname: Blum – volume: 38 start-page: 1980 year: 2015 end-page: 1996 ident: bib38 article-title: Dissecting spatiotemporal biomass accumulation in barley under different water regimes using high-throughput image analysis publication-title: Plant Cell Environ. contributor: fullname: Kilian – volume: 8 start-page: 946 year: 2015 end-page: 957 ident: bib48 article-title: Genetic architecture of natural variation in rice chlorophyll content revealed by a genome-wide association study publication-title: Mol. Plant contributor: fullname: Yu – volume: 135 start-page: 384 year: 2004 end-page: 399 ident: bib32 article-title: Quantitative trait loci associated with drought tolerance at reproductive stage in rice publication-title: Plant Physiol. contributor: fullname: Toojinda – volume: 104 start-page: 16402 year: 2007 end-page: 16409 ident: bib58 article-title: Strategies for developing green super rice publication-title: Proc. Natl. Acad. Sci. USA contributor: fullname: Zhang – volume: 7 start-page: 10527 year: 2016 ident: bib15 article-title: Genome-wide association and high-resolution phenotyping link publication-title: Nat. Commun. contributor: fullname: McCouch – volume: 65 start-page: 715 year: 2014 end-page: 741 ident: bib26 article-title: Genetic engineering and breeding of drought-resistant crops publication-title: Annu. Rev. Plant Biol. contributor: fullname: Xiong – volume: 114 start-page: 11536 year: 2017 end-page: 11541 ident: bib31 article-title: Natural variation identifies genes affecting drought-induced abscisic acid accumulation in publication-title: Proc. Natl. Acad. Sci. USA contributor: fullname: Verslues – volume: 49 start-page: 1384 year: 2011 end-page: 1391 ident: bib16 article-title: Induced over-expression of the transcription factor OsDREB2A improves drought tolerance in rice publication-title: Plant Physiol. Biochem. contributor: fullname: Wu – volume: 72 start-page: 673 year: 2015 end-page: 689 ident: bib20 article-title: General mechanisms of drought response and their application in drought resistance improvement in plants publication-title: Cell Mol. Life Sci. contributor: fullname: Xiong – volume: 2 start-page: 467 year: 2011 ident: bib59 article-title: Genome-wide association mapping reveals a rich genetic architecture of complex traits in publication-title: Nat. Commun. contributor: fullname: Mezey – volume: 44 start-page: 32 year: 2011 end-page: 39 ident: bib29 article-title: Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm publication-title: Nat. Genet. contributor: fullname: Zhu – volume: 6 start-page: 271 year: 1994 end-page: 282 ident: bib25 article-title: Efficient transformation of rice ( publication-title: Plant J. contributor: fullname: Kumashiro – volume: 517 start-page: 6 year: 2015 ident: bib19 article-title: The rising pressure of global water shortages publication-title: Nature contributor: fullname: Eliasson – volume: 127 start-page: 2253 year: 2014 end-page: 2266 ident: bib1 article-title: QTL analysis in multiple sorghum populations facilitates the dissection of the genetic and physiological control of tillering publication-title: Theor. Appl. Genet. contributor: fullname: Jordan – volume: 30 start-page: 2191 year: 2008 end-page: 2198 ident: bib11 article-title: Over-expression of OsDREB genes lead to enhanced drought tolerance in rice publication-title: Biotechnol. Lett. contributor: fullname: Wang – volume: 111 start-page: 1127 year: 2005 end-page: 1136 ident: bib56 article-title: Genetic analysis for drought resistance of rice at reproductive stage in field with different types of soil publication-title: Theor. Appl. Genet. contributor: fullname: Xu – volume: 41 start-page: D1172 year: 2013 ident: 10.1016/j.molp.2018.03.018_bib24 article-title: TropGeneDB, the multi-tropical crop information system updated and extended publication-title: Nucleic Acids Res. doi: 10.1093/nar/gks1105 contributor: fullname: Hamelin – volume: 61 start-page: 3519 year: 2010 ident: 10.1016/j.molp.2018.03.018_bib5 article-title: High-throughput shoot imaging to study drought responses publication-title: J. Exp. Bot. doi: 10.1093/jxb/erq201 contributor: fullname: Berger – volume: 32 start-page: D364 year: 2004 ident: 10.1016/j.molp.2018.03.018_bib43 article-title: TropGENE-DB, a multi-tropical crop information system publication-title: Nucleic Acids Res. doi: 10.1093/nar/gkh105 contributor: fullname: Ruiz – volume: 131 start-page: 747 year: 2012 ident: 10.1016/j.molp.2018.03.018_bib34 article-title: Evaluating the effective numbers of independent tests and significant p-value thresholds in commercial genotyping arrays and public imputation reference datasets publication-title: Hum. Genet. doi: 10.1007/s00439-011-1118-2 contributor: fullname: Li – volume: 109 start-page: 8872 year: 2012 ident: 10.1016/j.molp.2018.03.018_bib41 article-title: Genome-wide association mapping of leaf metabolic profiles for dissecting complex traits in maize publication-title: Proc. Natl. Acad. Sci. USA doi: 10.1073/pnas.1120813109 contributor: fullname: Riedelsheimer – volume: 264 start-page: 1452 year: 1994 ident: 10.1016/j.molp.2018.03.018_bib37 article-title: A protein phosphatase 2C involved in ABA signal transduction in Arabidopsis thaliana publication-title: Science doi: 10.1126/science.8197457 contributor: fullname: Meyer – volume: 7 start-page: 207 year: 1983 ident: 10.1016/j.molp.2018.03.018_bib42 article-title: Drought tolerant sorghum and cotton germplasm publication-title: Agr. Water Manag. doi: 10.1016/0378-3774(83)90084-7 contributor: fullname: Rosenow – volume: 30 start-page: 2191 year: 2008 ident: 10.1016/j.molp.2018.03.018_bib11 article-title: Over-expression of OsDREB genes lead to enhanced drought tolerance in rice publication-title: Biotechnol. Lett. doi: 10.1007/s10529-008-9811-5 contributor: fullname: Chen – volume: 8 start-page: 946 year: 2015 ident: 10.1016/j.molp.2018.03.018_bib48 article-title: Genetic architecture of natural variation in rice chlorophyll content revealed by a genome-wide association study publication-title: Mol. Plant doi: 10.1016/j.molp.2015.02.014 contributor: fullname: Wang – volume: 5 start-page: 5087 year: 2014 ident: 10.1016/j.molp.2018.03.018_bib53 article-title: Combining high-throughput phenotyping and genome-wide association studies to reveal natural genetic variation in rice publication-title: Nat. Commun. doi: 10.1038/ncomms6087 contributor: fullname: Yang – volume: 43 start-page: W122 year: 2015 ident: 10.1016/j.molp.2018.03.018_bib33 article-title: RiceNet v2: an improved network prioritization server for rice genes publication-title: Nucleic Acids Res. doi: 10.1093/nar/gkv253 contributor: fullname: Lee – volume: 16 start-page: 196 year: 2013 ident: 10.1016/j.molp.2018.03.018_bib21 article-title: Genetic mechanisms conferring adaptation to submergence and drought in rice: simple or complex? publication-title: Curr. Opin. Plant Biol. doi: 10.1016/j.pbi.2013.02.003 contributor: fullname: Fukao – volume: 3 start-page: 2442 year: 2013 ident: 10.1016/j.molp.2018.03.018_bib8 article-title: Precision phenotyping of biomass accumulation in triticale reveals temporal genetic patterns of regulation publication-title: Sci. Rep. doi: 10.1038/srep02442 contributor: fullname: Busemeyer – volume: 111 start-page: 1127 year: 2005 ident: 10.1016/j.molp.2018.03.018_bib56 article-title: Genetic analysis for drought resistance of rice at reproductive stage in field with different types of soil publication-title: Theor. Appl. Genet. doi: 10.1007/s00122-005-0040-1 contributor: fullname: Yue – volume: 26 start-page: 4636 year: 2014 ident: 10.1016/j.molp.2018.03.018_bib12 article-title: Dissecting the phenotypic components of crop plant growth and drought responses based on high-throughput image analysis publication-title: Plant Cell doi: 10.1105/tpc.114.129601 contributor: fullname: Chen – volume: 46 start-page: 714 year: 2014 ident: 10.1016/j.molp.2018.03.018_bib13 article-title: Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism publication-title: Nat. Genet. doi: 10.1038/ng.3007 contributor: fullname: Chen – volume: 163 start-page: 1868 year: 2013 ident: 10.1016/j.molp.2018.03.018_bib50 article-title: Rice WRKY13 regulates cross talk between abiotic and biotic stress signaling pathways by selective binding to different cis-elements publication-title: Plant Physiol. doi: 10.1104/pp.113.226019 contributor: fullname: Xiao – volume: 43 start-page: D1018 year: 2015 ident: 10.1016/j.molp.2018.03.018_bib60 article-title: RiceVarMap: a comprehensive database of rice genomic variations publication-title: Nucleic Acids Res. doi: 10.1093/nar/gku894 contributor: fullname: Zhao – volume: 38 start-page: 753 year: 2011 ident: 10.1016/j.molp.2018.03.018_bib6 article-title: Drought resistance—is it really a complex trait? publication-title: Funct. Plant Biol. doi: 10.1071/FP11101 contributor: fullname: Blum – volume: 10 start-page: e0116646 year: 2015 ident: 10.1016/j.molp.2018.03.018_bib9 article-title: A key ABA catabolic gene, OsABA8ox3, is involved in drought stress resistance in rice publication-title: PLoS One doi: 10.1371/journal.pone.0116646 contributor: fullname: Cai – volume: 44 start-page: 32 year: 2011 ident: 10.1016/j.molp.2018.03.018_bib29 article-title: Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm publication-title: Nat. Genet. doi: 10.1038/ng.1018 contributor: fullname: Huang – volume: 66 start-page: 7061 year: 2015 ident: 10.1016/j.molp.2018.03.018_bib30 article-title: Transcriptomic analysis comparing stay-green and senescent Sorghum bicolor lines identifies a role for proline biosynthesis in the stay-green trait publication-title: J. Exp. Bot. doi: 10.1093/jxb/erv405 contributor: fullname: Johnson – volume: 72 start-page: 673 year: 2015 ident: 10.1016/j.molp.2018.03.018_bib20 article-title: General mechanisms of drought response and their application in drought resistance improvement in plants publication-title: Cell Mol. Life Sci. doi: 10.1007/s00018-014-1767-0 contributor: fullname: Fang – volume: 327 start-page: 818 year: 2010 ident: 10.1016/j.molp.2018.03.018_bib45 article-title: Breeding technologies to increase crop production in a changing world publication-title: Science doi: 10.1126/science.1183700 contributor: fullname: Tester – volume: 112 start-page: E5411 year: 2015 ident: 10.1016/j.molp.2018.03.018_bib51 article-title: Breeding signatures of rice improvement revealed by a genomic variation map from a large germplasm collection publication-title: Proc. Natl. Acad. Sci. USA doi: 10.1073/pnas.1515919112 contributor: fullname: Xie – volume: 6 start-page: 271 year: 1994 ident: 10.1016/j.molp.2018.03.018_bib25 article-title: Efficient transformation of rice (Oryza sativa L.) mediated by Agrobacterium and sequence analysis of the boundaries of the T-DNA publication-title: Plant J. doi: 10.1046/j.1365-313X.1994.6020271.x contributor: fullname: Hiei – volume: 135 start-page: 384 year: 2004 ident: 10.1016/j.molp.2018.03.018_bib32 article-title: Quantitative trait loci associated with drought tolerance at reproductive stage in rice publication-title: Plant Physiol. doi: 10.1104/pp.103.035527 contributor: fullname: Lanceras – volume: 13 start-page: 2498 year: 2003 ident: 10.1016/j.molp.2018.03.018_bib44 article-title: Cytoscape: a software environment for integrated models of biomolecular interaction networks publication-title: Genome Res. doi: 10.1101/gr.1239303 contributor: fullname: Shannon – volume: 3 start-page: 194 year: 2010 ident: 10.1016/j.molp.2018.03.018_bib55 article-title: Q-TARO: QTL annotation rice online database publication-title: Rice doi: 10.1007/s12284-010-9041-z contributor: fullname: Yonemaru – volume: 66 start-page: 5567 year: 2015 ident: 10.1016/j.molp.2018.03.018_bib2 article-title: Genome-wide association mapping of growth dynamics detects time-specific and general quantitative trait loci publication-title: J. Exp. Bot. doi: 10.1093/jxb/erv176 contributor: fullname: Bac-Molenaar – volume: 8 start-page: 833 year: 2011 ident: 10.1016/j.molp.2018.03.018_bib36 article-title: FaST linear mixed models for genome-wide association studies publication-title: Nat. Methods doi: 10.1038/nmeth.1681 contributor: fullname: Lippert – volume: 10 year: 2017 ident: 10.1016/j.molp.2018.03.018_bib10 article-title: A comprehensive image-based phenomic analysis reveals the complex genetic architecture of shoot growth dynamics in rice (Oryza sativa) publication-title: Plant Genome doi: 10.3835/plantgenome2016.07.0064 contributor: fullname: Campbell – volume: 61 start-page: 421 year: 2010 ident: 10.1016/j.molp.2018.03.018_bib52 article-title: Genetic and molecular bases of rice yield publication-title: Annu. Rev. Plant Biol. doi: 10.1146/annurev-arplant-042809-112209 contributor: fullname: Xing – volume: 7 start-page: 10527 year: 2016 ident: 10.1016/j.molp.2018.03.018_bib15 article-title: Genome-wide association and high-resolution phenotyping link Oryza sativa panicle traits to numerous trait-specific QTL clusters publication-title: Nat. Commun. doi: 10.1038/ncomms10527 contributor: fullname: Crowell – volume: 48 start-page: 683 year: 2002 ident: 10.1016/j.molp.2018.03.018_bib39 article-title: Mapping QTLs associated with drought avoidance in upland rice grown in the Philippines and West Africa publication-title: Plant Mol. Biol. doi: 10.1023/A:1014805625790 contributor: fullname: Price – volume: 81 start-page: 559 year: 2007 ident: 10.1016/j.molp.2018.03.018_bib40 article-title: PLINK: a tool set for whole-genome association and population-based linkage analyses publication-title: Am. J. Hum. Genet. doi: 10.1086/519795 contributor: fullname: Purcell – volume: 104 start-page: 16402 year: 2007 ident: 10.1016/j.molp.2018.03.018_bib58 article-title: Strategies for developing green super rice publication-title: Proc. Natl. Acad. Sci. USA doi: 10.1073/pnas.0708013104 contributor: fullname: Zhang – volume: 42 start-page: 961 year: 2010 ident: 10.1016/j.molp.2018.03.018_bib28 article-title: Genome-wide association studies of 14 agronomic traits in rice landraces publication-title: Nat. Genet. doi: 10.1038/ng.695 contributor: fullname: Huang – volume: 65 start-page: 531 year: 2014 ident: 10.1016/j.molp.2018.03.018_bib27 article-title: Natural variations and genome-wide association studies in crop plants publication-title: Annu. Rev. Plant Biol. doi: 10.1146/annurev-arplant-050213-035715 contributor: fullname: Huang – volume: 114 start-page: 11536 year: 2017 ident: 10.1016/j.molp.2018.03.018_bib31 article-title: Natural variation identifies genes affecting drought-induced abscisic acid accumulation in Arabidopsis thaliana publication-title: Proc. Natl. Acad. Sci. USA doi: 10.1073/pnas.1705884114 contributor: fullname: Kalladan – volume: 28 start-page: 345 year: 2016 ident: 10.1016/j.molp.2018.03.018_bib4 article-title: Time-series transcriptomics reveals that AGAMOUS-LIKE22 affects primary metabolism and developmental processes in drought-stressed Arabidopsis publication-title: Plant Cell doi: 10.1105/tpc.15.00910 contributor: fullname: Bechtold – volume: 6 start-page: 343 year: 2009 ident: 10.1016/j.molp.2018.03.018_bib22 article-title: Enzymatic assembly of DNA molecules up to several hundred kilobases publication-title: Nat. Methods doi: 10.1038/nmeth.1318 contributor: fullname: Gibson – volume: 45 start-page: 43 year: 2013 ident: 10.1016/j.molp.2018.03.018_bib35 article-title: Genome-wide association study dissects the genetic architecture of oil biosynthesis in maize kernels publication-title: Nat. Genet. doi: 10.1038/ng.2484 contributor: fullname: Li – volume: 172 start-page: 1213 year: 2006 ident: 10.1016/j.molp.2018.03.018_bib57 article-title: Genetic basis of drought resistance at reproductive stage in rice: separation of drought tolerance from drought avoidance publication-title: Genetics doi: 10.1534/genetics.105.045062 contributor: fullname: Yue – volume: 65 start-page: 715 year: 2014 ident: 10.1016/j.molp.2018.03.018_bib26 article-title: Genetic engineering and breeding of drought-resistant crops publication-title: Annu. Rev. Plant Biol. doi: 10.1146/annurev-arplant-050213-040000 contributor: fullname: Hu – volume: 21 start-page: 263 year: 2005 ident: 10.1016/j.molp.2018.03.018_bib3 article-title: Haploview: analysis and visualization of LD and haplotype maps publication-title: Bioinformatics doi: 10.1093/bioinformatics/bth457 contributor: fullname: Barrett – volume: 38 start-page: 1980 year: 2015 ident: 10.1016/j.molp.2018.03.018_bib38 article-title: Dissecting spatiotemporal biomass accumulation in barley under different water regimes using high-throughput image analysis publication-title: Plant Cell Environ. doi: 10.1111/pce.12516 contributor: fullname: Neumann – volume: 517 start-page: 6 year: 2015 ident: 10.1016/j.molp.2018.03.018_bib19 article-title: The rising pressure of global water shortages publication-title: Nature doi: 10.1038/517006a contributor: fullname: Eliasson – volume: 66 start-page: 5605 year: 2015 ident: 10.1016/j.molp.2018.03.018_bib54 article-title: Genome-wide association study of rice (Oryza sativa L.) leaf traits with a high-throughput leaf scorer publication-title: J. Exp. Bot. doi: 10.1093/jxb/erv100 contributor: fullname: Yang – volume: 40 start-page: 4 year: 2017 ident: 10.1016/j.molp.2018.03.018_bib7 article-title: Osmotic adjustment is a prime drought stress adaptive engine in support of plant production publication-title: Plant Cell Environ. doi: 10.1111/pce.12800 contributor: fullname: Blum – volume: 48 start-page: 1233 year: 2016 ident: 10.1016/j.molp.2018.03.018_bib49 article-title: Genetic variation in ZmVPP1 contributes to drought tolerance in maize seedlings publication-title: Nat. Genet. doi: 10.1038/ng.3636 contributor: fullname: Wang – volume: 127 start-page: 2253 year: 2014 ident: 10.1016/j.molp.2018.03.018_bib1 article-title: QTL analysis in multiple sorghum populations facilitates the dissection of the genetic and physiological control of tillering publication-title: Theor. Appl. Genet. doi: 10.1007/s00122-014-2377-9 contributor: fullname: Alam – volume: 9 start-page: 516 year: 2008 ident: 10.1016/j.molp.2018.03.018_bib18 article-title: Establishing an adjusted p-value threshold to control the family-wide type 1 error in genome wide association studies publication-title: BMC Genomics doi: 10.1186/1471-2164-9-516 contributor: fullname: Duggal – volume: 164 start-page: 144 year: 2014 ident: 10.1016/j.molp.2018.03.018_bib46 article-title: Genome-wide association mapping combined with reverse genetics identifies new effectors of low water potential-induced proline accumulation in Arabidopsis publication-title: Plant Physiol. doi: 10.1104/pp.113.224014 contributor: fullname: Verslues – year: 2010 ident: 10.1016/j.molp.2018.03.018_bib47 contributor: fullname: Wang – volume: 2 start-page: 467 year: 2011 ident: 10.1016/j.molp.2018.03.018_bib59 article-title: Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa publication-title: Nat. Commun. doi: 10.1038/ncomms1467 contributor: fullname: Zhao – volume: 262 start-page: 579 year: 1999 ident: 10.1016/j.molp.2018.03.018_bib14 article-title: Mapping of post-flowering drought resistance traits in grain sorghum: association between QTLs influencing premature senescence and maturity publication-title: Mol. Gen. Genet. doi: 10.1007/s004380051120 contributor: fullname: Crasta – volume: 9 start-page: e111988 year: 2014 ident: 10.1016/j.molp.2018.03.018_bib17 article-title: HemI: A toolkit for illustrating heatmaps publication-title: PLoS One doi: 10.1371/journal.pone.0111988 contributor: fullname: Deng – volume: 57 start-page: 4 year: 2007 ident: 10.1016/j.molp.2018.03.018_bib23 article-title: Use of n-fold cross-validation to evaluate three methods to calculate heavy truck annual average daily traffic and vehicle miles traveled publication-title: J. Air Waste Manag. Assoc. doi: 10.1080/10473289.2007.10465292 contributor: fullname: Hallmark – volume: 112 start-page: 106 year: 2005 ident: 10.1016/j.molp.2018.03.018_bib61 article-title: Grain yield responses to moisture regimes in a rice population: association among traits and genetic markers publication-title: Theor. Appl. Genet. doi: 10.1007/s00122-005-0111-3 contributor: fullname: Zou – volume: 49 start-page: 1384 year: 2011 ident: 10.1016/j.molp.2018.03.018_bib16 article-title: Induced over-expression of the transcription factor OsDREB2A improves drought tolerance in rice publication-title: Plant Physiol. Biochem. doi: 10.1016/j.plaphy.2011.09.012 contributor: fullname: Cui |
SSID | ssj0060863 |
Score | 2.5746536 |
Snippet | Understanding how plants respond to drought can benefit drought resistance (DR) breeding. Using a non-destructive phenotyping facility, 51 image-based traits... |
SourceID | proquest crossref pubmed elsevier |
SourceType | Aggregation Database Index Database Publisher |
StartPage | 789 |
SubjectTerms | Databases, Genetic drought resistance drought response Droughts Genome-Wide Association Study GWAS image-based trait natural variation Oryza - genetics Oryza - physiology Phenotype rice |
Title | Genome-Wide Association Studies of Image Traits Reveal Genetic Architecture of Drought Resistance in Rice |
URI | https://dx.doi.org/10.1016/j.molp.2018.03.018 https://www.ncbi.nlm.nih.gov/pubmed/29614319 https://search.proquest.com/docview/2021730888 |
Volume | 11 |
hasFullText | 1 |
inHoldings | 1 |
isFullTextHit | |
isPrint | |
link | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV3JTsMwEB1B4cAFse_ISNxQ1CyOkxzbsrRsB9beLDuZSkE0QTRF4u8ZZ0EgAQdO2caJNbbfvMjPY4DDgIIwOnFg-SpEiwcet5RXqixEHCS2jViKx6-uRf-enw_94Qz0mrUwRlZZY3-F6SVa13fatTfbL2navjX6edesPQ2pk1KcmYU510wztWCu0324uGwAWRBrL3X2ZG-ZAvXamUrmNc6fTdpKJyxznZq9P36OT7_xzzIOnS7BYk0gWaeq4zLMYLYC892cSN77KqRnmOVjtB7TBNkX17NaL8jyERuMCUMYBam0mLAbfCOqyEz2aXoh63yZVzC2x-UuPgWZTQzRJO-wNGM3hC5rcH96ctfrW_VuClZMnKWwXC9WipomFnasFbfpHHWEfiQSLnyMMMBEBRy5TiJ0eag9eubHLo6IkvEw8dahleUZbgLzR4EY6UihLZBHimsaxkjUwhPa0eg4W3DU-FC-VEkzZKMme5LG49J4XNqepMMW-I2b5beml4Tqf5Y7aNpE0pgwEx0qw3w6ISP60fIIP8lmo2qsz3q4ERESwp3tf351BxbMVakW47vQKl6nuEe8pND7db8zx8FF_3ofZgfD7gd55-J5 |
link.rule.ids | 315,786,790,3525,24144,27600,27955,27956,45696,45712,45907 |
linkProvider | Elsevier |
linkToHtml | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV3JTsMwELXKIsEFse9gJG4oahbHSY6lUFooPZStN8tOJlIQTSoakPh7xllQkYADp0TxOLHG9psX-XlMyKmHQRis0DNc6YPBPIcZ0ilUFjz0ItMEKMTjtwPefWDXI3fUIO16L4yWVVbYX2J6gdbVk2blzeYkSZp3Wj9v672nPg5SjDNzZAHZQIDDfKF1_njTrwGZI2svdPZob-gK1d6ZUuY1zl502krLL3Kd6rM_fo5Pv_HPIg51VslKRSBpq2zjGmlAuk4WzzMkeR8bJLmCNBuD8ZREQGdcTyu9IM1i2hsjhlAMUkk-pUN4R6pIdfZpfCFtzawraNuL4hSfHM2mmmiid2iS0iGiyyZ56Fzet7tGdZqCESJnyQ3bCaXErgm5GSrJTLwHFYAb8IhxFwLwIJIeA6aiAGzmKwfL3NCGGCkZ8yNni8ynWQo7hLqxx2MVSDA5sEAyhdMYkFo4XFkKLGuXnNU-FJMyaYao1WTPQntcaI8L0xF42SVu7WbxresFovqf9U7qPhE4J_RCh0whe5uiEf5oOYifaLNddtZXO-wACQnizt4_v3pMlrr3t33R7w1u9smyLimUY-yAzOevb3CIHCVXR9UY_ATulOLg |
openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Genome-Wide+Association+Studies+of+Image+Traits+Reveal+Genetic+Architecture+of+Drought+Resistance+in+Rice&rft.jtitle=Molecular+plant&rft.au=Guo%2C+Zilong&rft.au=Yang%2C+Wanneng&rft.au=Chang%2C+Yu&rft.au=Ma%2C+Xiaosong&rft.date=2018-06-04&rft.issn=1674-2052&rft.volume=11&rft.issue=6&rft.spage=789&rft.epage=805&rft_id=info:doi/10.1016%2Fj.molp.2018.03.018&rft.externalDBID=n%2Fa&rft.externalDocID=10_1016_j_molp_2018_03_018 |
thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1674-2052&client=summon |
thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1674-2052&client=summon |
thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1674-2052&client=summon |