Semantic Web Service provision: a realistic framework for Bioinformatics programmers

Several semantic Web Services clients for Bioinformatics have been released, but to date no support systems for service providers have been described. We have created a framework ('MobyServlet') that very simply allows an existing Java application to conform to the MOBY-S semantic Web Serv...

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Published inBioinformatics Vol. 23; no. 9; pp. 1178 - 1180
Main Authors Gordon, Paul M.K., Trinh, Quang, Sensen, Christoph W.
Format Journal Article
LanguageEnglish
Published Oxford Oxford University Press 01.05.2007
Oxford Publishing Limited (England)
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Abstract Several semantic Web Services clients for Bioinformatics have been released, but to date no support systems for service providers have been described. We have created a framework ('MobyServlet') that very simply allows an existing Java application to conform to the MOBY-S semantic Web Services protocol. Using an existing Java program for codon-pair bias determination as an example, we enumerate the steps required for MOBY-S compliance. With minimal programming effort, such a deployment has the advantages of: (1) wider exposure to the user community by automatic inclusion in all MOBY-S client programs and (2) automatic interoperability with other MOBY-S services for input and output. Complex on-line analysis will become easier for biologists as more developers adopt MOBY-S. Availability: The framework and documentation are freely available from the Java developer's section of http://www.biomoby.org/. Contact: gordonp@ucalgary.ca
AbstractList Several semantic Web Services clients for Bioinformatics have been released, but to date no support systems for service providers have been described. We have created a framework ('MobyServlet') that very simply allows an existing Java application to conform to the MOBY-S semantic Web Services protocol. Using an existing Java program for codon-pair bias determination as an example, we enumerate the steps required for MOBY-S compliance. With minimal programming effort, such a deployment has the advantages of: (1) wider exposure to the user community by automatic inclusion in all MOBY-S client programs and (2) automatic interoperability with other MOBY-S services for input and output. Complex on-line analysis will become easier for biologists as more developers adopt MOBY-S. Availability: The framework and documentation are freely available from the Java developer's section of http://www.biomoby.org/. Contact: gordonp@ucalgary.ca.
Several semantic Web Services clients for Bioinformatics have been released, but to date no support systems for service providers have been described. We have created a framework ('MobyServlet') that very simply allows an existing Java application to conform to the MOBY-S semantic Web Services protocol. Using an existing Java program for codon-pair bias determination as an example, we enumerate the steps required for MOBY-S compliance. With minimal programming effort, such a deployment has the advantages of: (1) wider exposure to the user community by automatic inclusion in all MOBY-S client programs and (2) automatic interoperability with other MOBY-S services for input and output. Complex on-line analysis will become easier for biologists as more developers adopt MOBY-S. AVAILABILITY: The framework and documentation are freely available from the Java developer's section of http://www.biomoby.org/. CONTACT: gordonp@ucalgary.ca
UNLABELLEDSeveral semantic Web Services clients for Bioinformatics have been released, but to date no support systems for service providers have been described. We have created a framework ('MobyServlet') that very simply allows an existing Java application to conform to the MOBY-S semantic Web Services protocol. Using an existing Java program for codon-pair bias determination as an example, we enumerate the steps required for MOBY-S compliance. With minimal programming effort, such a deployment has the advantages of: (1) wider exposure to the user community by automatic inclusion in all MOBY-S client programs and (2) automatic interoperability with other MOBY-S services for input and output. Complex on-line analysis will become easier for biologists as more developers adopt MOBY-S.AVAILABILITYThe framework and documentation are freely available from the Java developer's section of http://www.biomoby.org/.
Abstract Summary: Several semantic Web Services clients for Bioinformatics have been released, but to date no support systems for service providers have been described. We have created a framework (‘MobyServlet’) that very simply allows an existing Java application to conform to the MOBY-S semantic Web Services protocol. Using an existing Java program for codon-pair bias determination as an example, we enumerate the steps required for MOBY-S compliance. With minimal programming effort, such a deployment has the advantages of: (1) wider exposure to the user community by automatic inclusion in all MOBY-S client programs and (2) automatic interoperability with other MOBY-S services for input and output. Complex on-line analysis will become easier for biologists as more developers adopt MOBY-S. Availability: The framework and documentation are freely available from the Java developer's section of http://www.biomoby.org/. Contact:  gordonp@ucalgary.ca
Several semantic Web Services clients for Bioinformatics have been released, but to date no support systems for service providers have been described. We have created a framework ('MobyServlet') that very simply allows an existing Java application to conform to the MOBY-S semantic Web Services protocol. Using an existing Java program for codon-pair bias determination as an example, we enumerate the steps required for MOBY-S compliance. With minimal programming effort, such a deployment has the advantages of: (1) wider exposure to the user community by automatic inclusion in all MOBY-S client programs and (2) automatic interoperability with other MOBY-S services for input and output. Complex on-line analysis will become easier for biologists as more developers adopt MOBY-S. The framework and documentation are freely available from the Java developer's section of http://www.biomoby.org/.
Several semantic Web Services clients for Bioinformatics have been released, but to date no support systems for service providers have been described. We have created a framework ('MobyServlet') that very simply allows an existing Java application to conform to the MOBY-S semantic Web Services protocol. Using an existing Java program for codon-pair bias determination as an example, we enumerate the steps required for MOBY-S compliance. With minimal programming effort, such a deployment has the advantages of: (1) wider exposure to the user community by automatic inclusion in all MOBY-S client programs and (2) automatic interoperability with other MOBY-S services for input and output. Complex on-line analysis will become easier for biologists as more developers adopt MOBY-S. Availability: The framework and documentation are freely available from the Java developer's section of http://www.biomoby.org/. Contact: gordonp@ucalgary.ca
ArticleNumber 1178
Author Sensen, Christoph W.
Trinh, Quang
Gordon, Paul M.K.
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10.1093/bioinformatics/bti740
10.1186/1751-0473-1-4
10.1007/11431053_2
10.1093/bib/3.4.331
10.1093/bioinformatics/bth361
10.1093/nar/15.3.1281
10.1074/jbc.270.39.22801
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Issue 9
Keywords Semantic web
Interpolation
JAVA language
Computer program
Web service
Development
Bioinformatics
Application
Scope note
Framework
Automatic
Language English
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Turinsky (2023041209112399600_) 2005; 5
Carrere (2023041209112399600_) 2006; 22
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Snippet Several semantic Web Services clients for Bioinformatics have been released, but to date no support systems for service providers have been described. We have...
Abstract Summary: Several semantic Web Services clients for Bioinformatics have been released, but to date no support systems for service providers have been...
UNLABELLEDSeveral semantic Web Services clients for Bioinformatics have been released, but to date no support systems for service providers have been...
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SubjectTerms Bioinformatics
Biological and medical sciences
Computational Biology - methods
Database Management Systems
Databases, Genetic
Fundamental and applied biological sciences. Psychology
General aspects
Information Storage and Retrieval - methods
Internet
Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects)
Natural Language Processing
Programming Languages
Semantics
Software
User-Computer Interface
Title Semantic Web Service provision: a realistic framework for Bioinformatics programmers
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