Semantic Web Service provision: a realistic framework for Bioinformatics programmers
Several semantic Web Services clients for Bioinformatics have been released, but to date no support systems for service providers have been described. We have created a framework ('MobyServlet') that very simply allows an existing Java application to conform to the MOBY-S semantic Web Serv...
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Published in | Bioinformatics Vol. 23; no. 9; pp. 1178 - 1180 |
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Main Authors | , , |
Format | Journal Article |
Language | English |
Published |
Oxford
Oxford University Press
01.05.2007
Oxford Publishing Limited (England) |
Subjects | |
Online Access | Get full text |
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Abstract | Several semantic Web Services clients for Bioinformatics have been released, but to date no support systems for service providers have been described. We have created a framework ('MobyServlet') that very simply allows an existing Java application to conform to the MOBY-S semantic Web Services protocol. Using an existing Java program for codon-pair bias determination as an example, we enumerate the steps required for MOBY-S compliance. With minimal programming effort, such a deployment has the advantages of: (1) wider exposure to the user community by automatic inclusion in all MOBY-S client programs and (2) automatic interoperability with other MOBY-S services for input and output. Complex on-line analysis will become easier for biologists as more developers adopt MOBY-S.
Availability: The framework and documentation are freely available from the Java developer's section of
http://www.biomoby.org/.
Contact:
gordonp@ucalgary.ca |
---|---|
AbstractList | Several semantic Web Services clients for Bioinformatics have been released, but to date no support systems for service providers have been described. We have created a framework ('MobyServlet') that very simply allows an existing Java application to conform to the MOBY-S semantic Web Services protocol. Using an existing Java program for codon-pair bias determination as an example, we enumerate the steps required for MOBY-S compliance. With minimal programming effort, such a deployment has the advantages of: (1) wider exposure to the user community by automatic inclusion in all MOBY-S client programs and (2) automatic interoperability with other MOBY-S services for input and output. Complex on-line analysis will become easier for biologists as more developers adopt MOBY-S. Availability: The framework and documentation are freely available from the Java developer's section of http://www.biomoby.org/. Contact: gordonp@ucalgary.ca. Several semantic Web Services clients for Bioinformatics have been released, but to date no support systems for service providers have been described. We have created a framework ('MobyServlet') that very simply allows an existing Java application to conform to the MOBY-S semantic Web Services protocol. Using an existing Java program for codon-pair bias determination as an example, we enumerate the steps required for MOBY-S compliance. With minimal programming effort, such a deployment has the advantages of: (1) wider exposure to the user community by automatic inclusion in all MOBY-S client programs and (2) automatic interoperability with other MOBY-S services for input and output. Complex on-line analysis will become easier for biologists as more developers adopt MOBY-S. AVAILABILITY: The framework and documentation are freely available from the Java developer's section of http://www.biomoby.org/. CONTACT: gordonp@ucalgary.ca UNLABELLEDSeveral semantic Web Services clients for Bioinformatics have been released, but to date no support systems for service providers have been described. We have created a framework ('MobyServlet') that very simply allows an existing Java application to conform to the MOBY-S semantic Web Services protocol. Using an existing Java program for codon-pair bias determination as an example, we enumerate the steps required for MOBY-S compliance. With minimal programming effort, such a deployment has the advantages of: (1) wider exposure to the user community by automatic inclusion in all MOBY-S client programs and (2) automatic interoperability with other MOBY-S services for input and output. Complex on-line analysis will become easier for biologists as more developers adopt MOBY-S.AVAILABILITYThe framework and documentation are freely available from the Java developer's section of http://www.biomoby.org/. Abstract Summary: Several semantic Web Services clients for Bioinformatics have been released, but to date no support systems for service providers have been described. We have created a framework (‘MobyServlet’) that very simply allows an existing Java application to conform to the MOBY-S semantic Web Services protocol. Using an existing Java program for codon-pair bias determination as an example, we enumerate the steps required for MOBY-S compliance. With minimal programming effort, such a deployment has the advantages of: (1) wider exposure to the user community by automatic inclusion in all MOBY-S client programs and (2) automatic interoperability with other MOBY-S services for input and output. Complex on-line analysis will become easier for biologists as more developers adopt MOBY-S. Availability: The framework and documentation are freely available from the Java developer's section of http://www.biomoby.org/. Contact: gordonp@ucalgary.ca Several semantic Web Services clients for Bioinformatics have been released, but to date no support systems for service providers have been described. We have created a framework ('MobyServlet') that very simply allows an existing Java application to conform to the MOBY-S semantic Web Services protocol. Using an existing Java program for codon-pair bias determination as an example, we enumerate the steps required for MOBY-S compliance. With minimal programming effort, such a deployment has the advantages of: (1) wider exposure to the user community by automatic inclusion in all MOBY-S client programs and (2) automatic interoperability with other MOBY-S services for input and output. Complex on-line analysis will become easier for biologists as more developers adopt MOBY-S. The framework and documentation are freely available from the Java developer's section of http://www.biomoby.org/. Several semantic Web Services clients for Bioinformatics have been released, but to date no support systems for service providers have been described. We have created a framework ('MobyServlet') that very simply allows an existing Java application to conform to the MOBY-S semantic Web Services protocol. Using an existing Java program for codon-pair bias determination as an example, we enumerate the steps required for MOBY-S compliance. With minimal programming effort, such a deployment has the advantages of: (1) wider exposure to the user community by automatic inclusion in all MOBY-S client programs and (2) automatic interoperability with other MOBY-S services for input and output. Complex on-line analysis will become easier for biologists as more developers adopt MOBY-S. Availability: The framework and documentation are freely available from the Java developer's section of http://www.biomoby.org/. Contact: gordonp@ucalgary.ca |
ArticleNumber | 1178 |
Author | Sensen, Christoph W. Trinh, Quang Gordon, Paul M.K. |
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Copyright | The Author 2007. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org 2007 2008 INIST-CNRS The Author 2007. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org |
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References | Irwin (2023041209112399600_) 1995; 270 Oinn (2023041209112399600_) 2004; 20 Wilkinson (2023041209112399600_) 2002; 3 Navas-Delgado (2023041209112399600_) 2006; 22 Wilkinson (2023041209112399600_) 2006; 1 Lord (2023041209112399600_) 2005 Sharp (2023041209112399600_) 1987; 15 Turinsky (2023041209112399600_) 2005; 5 Carrere (2023041209112399600_) 2006; 22 |
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SubjectTerms | Bioinformatics Biological and medical sciences Computational Biology - methods Database Management Systems Databases, Genetic Fundamental and applied biological sciences. Psychology General aspects Information Storage and Retrieval - methods Internet Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects) Natural Language Processing Programming Languages Semantics Software User-Computer Interface |
Title | Semantic Web Service provision: a realistic framework for Bioinformatics programmers |
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