Systematic quantification of the anion transport function of pendrin (SLC26A4) and its disease‐associated variants
Thanks to the advent of rapid DNA sequencing technology and its prevalence, many disease‐associated genetic variants are rapidly identified in many genes from patient samples. However, the subsequent effort to experimentally validate and define their pathological roles is extremely slow. Consequentl...
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Published in | Human mutation Vol. 41; no. 1; pp. 316 - 331 |
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Main Authors | , , , , , , , |
Format | Journal Article |
Language | English |
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01.01.2020
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Abstract | Thanks to the advent of rapid DNA sequencing technology and its prevalence, many disease‐associated genetic variants are rapidly identified in many genes from patient samples. However, the subsequent effort to experimentally validate and define their pathological roles is extremely slow. Consequently, the pathogenicity of most disease‐associated genetic variants is solely speculated in silico, which is no longer deemed compelling. We developed an experimental approach to efficiently quantify the pathogenic effects of disease‐associated genetic variants with a focus on SLC26A4, which is essential for normal inner ear function. Alterations of this gene are associated with both syndromic and nonsyndromic hereditary hearing loss with various degrees of severity. We established HEK293T‐based stable cell lines that express pendrin missense variants in a doxycycline‐dependent manner, and systematically determined their anion transport activities with high accuracy in a 96‐well plate format using a high throughput plate reader. Our doxycycline dosage‐dependent transport assay objectively distinguishes missense variants that indeed impair the function of pendrin from those that do not (functional variants). We also found that some of these putative missense variants disrupt normal messenger RNA splicing. Our comprehensive experimental approach helps determine the pathogenicity of each pendrin variant, which should guide future efforts to benefit patients. |
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AbstractList | Thanks to the advent of rapid DNA sequencing technology and its prevalence, many disease-associated genetic variants are rapidly identified in many genes from patient samples. However, the subsequent effort to experimentally validate and define their pathological roles is extremely slow. Consequently, the pathogenicity of most disease-associated genetic variants is solely speculated in silico, which is no longer deemed compelling. We developed an experimental approach to efficiently quantify the pathogenic effects of disease-associated genetic variants with a focus on SLC26A4, which is essential for normal inner ear function. Alterations of this gene are associated with both syndromic and nonsyndromic hereditary hearing loss with various degrees of severity. We established HEK293T-based stable cell lines that express pendrin missense variants in a doxycycline-dependent manner, and systematically determined their anion transport activities with high accuracy in a 96-well plate format using a high throughput plate reader. Our doxycycline dosage-dependent transport assay objectively distinguishes missense variants that indeed impair the function of pendrin from those that do not (functional variants). We also found that some of these putative missense variants disrupt normal messenger RNA splicing. Our comprehensive experimental approach helps determine the pathogenicity of each pendrin variant, which should guide future efforts to benefit patients. Thanks to the advent of rapid DNA sequencing technology and its prevalence, many disease-associated genetic variants are rapidly identified in many genes from patient samples. However, the subsequent effort to experimentally validate and define their pathological roles is extremely slow. Consequently, the pathogenicity of most disease-associated genetic variants is solely speculated in silico , which is no longer deemed compelling. We developed an experimental approach to efficiently quantify the pathogenic effects of disease-associated genetic variants with a focus on SLC26A4 , which is essential for normal inner ear function. Alterations of this gene are associated with both syndromic and nonsyndromic hereditary hearing loss with various severity. We established HEK293T-based stable cell lines that express pendrin missense variants in a doxycycline-dependent manner, and systematically determined their anion transport activities with high accuracy in a 96-well plate format using a high throughput plate reader. Our doxycycline dosage-dependent transport assay objectively distinguishes missense variants that indeed impair the function of pendrin from those that do not (functional variants). We also found that some of these putative missense variants disrupt normal mRNA splicing. Our comprehensive experimental approach helps determine the pathogenicity of each pendrin variant, which should guide future efforts to benefit patients. |
Author | Ogawa, Kaoru Mutai, Hideki Homma, Kazuaki Kojima, Takashi Rosenberg, Samuel K. Matsunaga, Tatsuo Wasano, Koichiro Takahashi, Satoe |
AuthorAffiliation | 3 Department of Otolaryngology, Head and Neck Surgery, Keio University School of Medicine, Tokyo 160-8582, Japan 4 The Hugh Knowles Center for Clinical and Basic Science in Hearing and Its Disorders, Northwestern University, Evanston, IL 60608, USA 2 Laboratory of Auditory Disorders, Division of Hearing and Balance Research, National Institute of Sensory Organs, National Hospital Organization Tokyo Medical Center, 2-5-1 Higashigaoka, Meguro, Tokyo 152-8902, Japan 1 Department of Otolaryngology – Head and Neck Surgery, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA |
AuthorAffiliation_xml | – name: 2 Laboratory of Auditory Disorders, Division of Hearing and Balance Research, National Institute of Sensory Organs, National Hospital Organization Tokyo Medical Center, 2-5-1 Higashigaoka, Meguro, Tokyo 152-8902, Japan – name: 3 Department of Otolaryngology, Head and Neck Surgery, Keio University School of Medicine, Tokyo 160-8582, Japan – name: 4 The Hugh Knowles Center for Clinical and Basic Science in Hearing and Its Disorders, Northwestern University, Evanston, IL 60608, USA – name: 1 Department of Otolaryngology – Head and Neck Surgery, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA |
Author_xml | – sequence: 1 givenname: Koichiro orcidid: 0000-0001-7335-3622 surname: Wasano fullname: Wasano, Koichiro email: wasano@a5.keio.jp organization: National Hospital Organization Tokyo Medical Center – sequence: 2 givenname: Satoe orcidid: 0000-0003-4264-3023 surname: Takahashi fullname: Takahashi, Satoe organization: Northwestern University – sequence: 3 givenname: Samuel K. surname: Rosenberg fullname: Rosenberg, Samuel K. organization: Northwestern University – sequence: 4 givenname: Takashi surname: Kojima fullname: Kojima, Takashi organization: Northwestern University – sequence: 5 givenname: Hideki surname: Mutai fullname: Mutai, Hideki organization: National Hospital Organization Tokyo Medical Center – sequence: 6 givenname: Tatsuo surname: Matsunaga fullname: Matsunaga, Tatsuo organization: National Hospital Organization Tokyo Medical Center – sequence: 7 givenname: Kaoru surname: Ogawa fullname: Ogawa, Kaoru organization: Keio University School of Medicine – sequence: 8 givenname: Kazuaki orcidid: 0000-0002-4440-2277 surname: Homma fullname: Homma, Kazuaki email: k-homma@northwestern.edu organization: Northwestern University |
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Cites_doi | 10.1074/jbc.M110.120188 10.1002/humu.20884 10.1172/JCI59353 10.1002/biot.201400821 10.1093/hmg/9.11.1709 10.1038/nprot.2015.053 10.1021/bi3016839 10.1210/jcem.87.4.8435 10.1136/jmedgenet-2017-104721 10.1159/000335108 10.1136/jmg.2007.054635 10.1038/7783 10.1038/sj.ejhg.5201073 10.1093/hmg/10.2.153 10.1371/journal.pone.0069047 10.1002/lary.24368 10.1111/j.1399-0004.2004.00386.x 10.1371/journal.pcbi.1003440 10.1152/physiolgenomics.00047.2009 10.1074/jbc.RA118.001831 10.1038/nmeth0410-248 10.1038/gim.2015.30 10.1073/pnas.1511585112 10.1038/jhg.2014.12 10.1038/ncomms4622 10.1016/j.heares.2010.08.015 10.2119/molmed.2015.00226 10.1017/S1431927613000457 10.1002/humu.23630 10.7554/eLife.46986 10.1093/bioinformatics/btq028 10.1007/s00109-016-1410-7 10.1002/humu.23384 10.1007/s00439-017-1779-6 10.1086/518314 10.1002/humu.22204 10.1016/j.ajhg.2009.04.014 10.1371/journal.pgen.1003143 10.1002/lary.25737 10.1016/j.heares.2004.08.007 10.1146/annurev-biochem-060614-034316 10.1021/bi0516273 10.1007/s00335-014-9515-1 10.1371/journal.pgen.1003641 10.1016/S0014-5793(01)02561-3 10.1152/ajprenal.2001.280.2.F356 10.1089/thy.2005.734 10.1111/cge.12273 10.1038/nsmb.3091 10.1038/ng1297-411 10.1159/000335110 10.1515/hsz-2016-0254 10.1159/000335103 10.1038/ncomms11386 10.1136/jmg.2004.024208 10.1074/jbc.M112.411579 10.7717/peerj.384 10.1159/000335109 10.1016/j.ijporl.2012.02.053 10.1371/journal.pone.0022150 10.1371/journal.pone.0064906 10.1371/journal.pone.0014041 |
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References | 2009; 84 2000; 9 2013; 288 2014; 25 2017; 398 2013; 8 2005; 67 2013; 9 2003; 11 2013; 19 2018; 39 2014; 5 2010; 26 2018; 293 2014; 2 2015; 84 2002; 87 2013; 52 2014; 59 1997; 17 2010; 270 2011; 28 2014; 8 2010; 5 2010; 7 2001; 499 2014; 10 2011; 121 2001; 10 2014; 124 2019; 8 2015; 17 2005; 199 2001; 280 2015; 10 2005; 42 2010; 285 1999; 21 2016; 94 2016; 126 2011; 6 2017; 136 2012; 76 2014; 86 2016; 7 2009; 30 2006; 45 2013; 34 2017; 54 2015; 112 2015; 22 1999; 36 2007; 80 2008; 45 2005; 15 2009; 38 2016; 22 e_1_2_8_28_1 e_1_2_8_24_1 e_1_2_8_47_1 e_1_2_8_26_1 e_1_2_8_49_1 e_1_2_8_3_1 e_1_2_8_5_1 e_1_2_8_7_1 e_1_2_8_9_1 e_1_2_8_20_1 e_1_2_8_43_1 e_1_2_8_22_1 e_1_2_8_45_1 e_1_2_8_64_1 e_1_2_8_62_1 e_1_2_8_41_1 e_1_2_8_60_1 e_1_2_8_17_1 e_1_2_8_19_1 e_1_2_8_13_1 e_1_2_8_36_1 e_1_2_8_59_1 e_1_2_8_15_1 e_1_2_8_38_1 e_1_2_8_57_1 e_1_2_8_32_1 e_1_2_8_55_1 e_1_2_8_34_1 e_1_2_8_53_1 e_1_2_8_51_1 e_1_2_8_30_1 e_1_2_8_29_1 e_1_2_8_25_1 e_1_2_8_46_1 e_1_2_8_27_1 e_1_2_8_48_1 e_1_2_8_2_1 e_1_2_8_4_1 e_1_2_8_6_1 e_1_2_8_8_1 e_1_2_8_21_1 e_1_2_8_42_1 e_1_2_8_23_1 e_1_2_8_44_1 e_1_2_8_63_1 e_1_2_8_40_1 e_1_2_8_61_1 e_1_2_8_18_1 e_1_2_8_39_1 e_1_2_8_14_1 e_1_2_8_35_1 e_1_2_8_16_1 e_1_2_8_37_1 e_1_2_8_58_1 e_1_2_8_10_1 e_1_2_8_31_1 e_1_2_8_56_1 Coucke P. J. (e_1_2_8_11_1) 1999; 36 e_1_2_8_12_1 e_1_2_8_33_1 e_1_2_8_54_1 e_1_2_8_52_1 e_1_2_8_50_1 |
References_xml | – volume: 8 issue: 7 year: 2013 article-title: Pixels as ROIs (PAR): A less‐biased and statistically powerful approach for gleaning functional information from image stacks publication-title: PLoS One – volume: 293 start-page: 9970 issue: 26 year: 2018 end-page: 9980 article-title: The extracellular loop of pendrin and prestin modulates their voltage‐sensing property publication-title: Journal of Biological Chemistry – volume: 499 start-page: 220 issue: 3 year: 2001 end-page: 224 article-title: Green fluorescent protein‐based halide indicators with improved chloride and iodide affinities publication-title: FEBS Letters – volume: 94 start-page: 1053 issue: 9 year: 2016 end-page: 1062 article-title: The R130S mutation significantly affects the function of prestin, the outer hair cell motor protein publication-title: Journal of Molecular Medicine – volume: 80 start-page: 1055 issue: 6 year: 2007 end-page: 1063 article-title: Transcriptional control of SLC26A4 is involved in Pendred syndrome and nonsyndromic enlargement of vestibular aqueduct (DFNB4) publication-title: American Journal of Human Genetics – volume: 42 start-page: 159 issue: 2 year: 2005 end-page: 165 article-title: SLC26A4/PDS genotype–phenotype correlation in hearing loss with enlargement of the vestibular aqueduct (EVA): Evidence that Pendred syndrome and non‐syndromic EVA are distinct clinical and genetic entities publication-title: Journal of Medical Genetics – volume: 28 start-page: 485 issue: 3 year: 2011 end-page: 490 article-title: Controversies concerning the role of pendrin as an apical iodide transporter in thyroid follicular cells publication-title: Cellular Physiology and Biochemistry – volume: 136 start-page: 665 issue: 6 year: 2017 end-page: 677 article-title: The Human Gene Mutation Database: Towards a comprehensive repository of inherited mutation data for medical research, genetic diagnosis and next‐generation sequencing studies publication-title: Human Genetics – volume: 39 start-page: 433 issue: 3 year: 2018 end-page: 440 article-title: Exonic mutations and exon skipping: Lessons learned from DFNA5 publication-title: Human Mutation – volume: 5 start-page: 3622 year: 2014 article-title: Molecular architecture and the structural basis for anion interaction in prestin and SLC26 transporters publication-title: Nature communications – volume: 17 start-page: 411 issue: 4 year: 1997 end-page: 422 article-title: Pendred syndrome is caused by mutations in a putative sulphate transporter gene (PDS) publication-title: Nature Genetics – volume: 45 start-page: 411 issue: 7 year: 2008 end-page: 419 article-title: Heterogeneity in the processing defect of SLC26A4 mutants publication-title: Journal of Medical Genetics – volume: 30 start-page: 599 issue: 4 year: 2009 end-page: 608 article-title: Hypo‐functional SLC26A4 variants associated with nonsyndromic hearing loss and enlargement of the vestibular aqueduct: Genotype–phenotype correlation or coincidental polymorphisms? publication-title: Human Mutation – volume: 17 start-page: 405 issue: 5 year: 2015 end-page: 424 article-title: Standards and guidelines for the interpretation of sequence variants: A joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology publication-title: Genetics in Medicine – volume: 10 start-page: 845 issue: 6 year: 2015 end-page: 858 article-title: The Phyre2 web portal for protein modeling, prediction and analysis publication-title: Nature Protocols – volume: 22 start-page: 803 issue: 10 year: 2015 end-page: 808 article-title: Structure of a prokaryotic fumarate transporter reveals the architecture of the SLC26 family publication-title: Nature Structural & Molecular Biology – volume: 10 issue: 1 year: 2014 article-title: PredictSNP: Robust and accurate consensus classifier for prediction of disease‐related mutations publication-title: PLoS Computational Biology – volume: 7 start-page: 248 issue: 4 year: 2010 end-page: 249 article-title: A method and server for predicting damaging missense mutations publication-title: Nature Methods – volume: 84 start-page: 651 issue: 5 year: 2009 end-page: 657 article-title: Mutations of KCNJ10 together with mutations of SLC26A4 cause digenic nonsyndromic hearing loss associated with enlarged vestibular aqueduct syndrome publication-title: American Journal of Human Genetics – volume: 285 start-page: 21724 issue: 28 year: 2010 end-page: 21735 article-title: Calcium oxalate stone formation in the inner ear as a result of an Slc26a4 mutation publication-title: Journal of Biological Chemistry – volume: 19 start-page: 799 issue: 4 year: 2013 end-page: 807 article-title: The conserved tetrameric subunit stoichiometry of slc26 proteins publication-title: Microscopy and Microanalysis – volume: 15 start-page: 734 issue: 7 year: 2005 end-page: 741 article-title: Molecular analysis of the PDS gene in a nonconsanguineous Sicilian family with Pendred's syndrome publication-title: Thyroid – volume: 86 start-page: 270 issue: 3 year: 2014 end-page: 275 article-title: Correlation between genotype and phenotype in patients with bi‐allelic SLC26A4 mutations publication-title: Clinical Genetics – volume: 280 start-page: F356 issue: 2 year: 2001 end-page: F364 article-title: Pendrin: An apical Cl /OH /HCO exchanger in the kidney cortex publication-title: American Journal of Physiology‐Renal Physiology – volume: 39 start-page: 1593 issue: 11 year: 2018 end-page: 1613 article-title: Expert specification of the ACMG/AMP variant interpretation guidelines for genetic hearing loss publication-title: Human Mutation – volume: 112 start-page: E5189 issue: 37 year: 2015 end-page: E5198 article-title: Comparison of predicted and actual consequences of missense mutations publication-title: Proceedings of the National Academy of Sciences of the United States of America – volume: 8 year: 2019 article-title: Cryo‐EM structures and functional characterization of murine Slc26a9 reveal mechanism of uncoupled chloride transport publication-title: Elife – volume: 199 start-page: 22 issue: 1–2 year: 2005 end-page: 30 article-title: Hearing loss associated with enlarged vestibular aqueduct and Mondini dysplasia is caused by splice‐site mutation in the PDS gene publication-title: Hearing Research – volume: 288 start-page: 2452 issue: 4 year: 2013 end-page: 2463 article-title: The V499G/Y501H mutation impairs fast motor kinetics of prestin and has significance for defining functional independence of individual prestin subunits publication-title: Journal of Biological Chemistry – volume: 76 start-page: 832 issue: 6 year: 2012 end-page: 836 article-title: Segregation of a new mutation in SLC26A4 and p.E47X mutation in GJB2 within a consanguineous Tunisian family affected with Pendred syndrome publication-title: International Journal of Pediatric Otorhinolaryngology – volume: 398 start-page: 165 issue: 2 year: 2017 end-page: 174 article-title: The novel class of seven transmembrane segment inverted repeat carriers publication-title: Biological Chemistry – volume: 10 start-page: 153 issue: 2 year: 2001 end-page: 161 article-title: Targeted disruption of mouse Pds provides insight about the inner‐ear defects encountered in Pendred syndrome publication-title: Human Molecular Genetics – volume: 67 start-page: 160 issue: 2 year: 2005 end-page: 165 article-title: Genetic basis of hearing loss associated with enlarged vestibular aqueducts in Koreans publication-title: Clinical Genetics – volume: 10 start-page: 647 issue: 4 year: 2015 end-page: 653 article-title: Optimized sleeping beauty transposons rapidly generate stable transgenic cell lines publication-title: Biotechnology Journal – volume: 54 start-page: 665 issue: 10 year: 2017 end-page: 673 article-title: A common SLC26A4‐linked haplotype underlying non‐syndromic hearing loss with enlargement of the vestibular aqueduct publication-title: Journal of Medical Genetics – volume: 22 start-page: 41 issue: 1 year: 2016 end-page: 53 article-title: Reduction of cellular expression levels is a common feature of functionally affected pendrin (SLC26A4) protein variants publication-title: Molecular Medicine – volume: 9 start-page: 1709 issue: 11 year: 2000 end-page: 1715 article-title: Functional differences of the PDS gene product are associated with phenotypic variation in patients with Pendred syndrome and non‐syndromic hearing loss (DFNB4) publication-title: Human Molecular Genetics – volume: 270 start-page: 110 issue: 1‐2 year: 2010 end-page: 118 article-title: Salicylate restores transport function and anion exchanger activity of missense pendrin mutations publication-title: Hearing Research – volume: 21 start-page: 440 issue: 4 year: 1999 end-page: 443 article-title: The Pendred syndrome gene encodes a chloride‐iodide transport protein publication-title: Nature Genetics – volume: 28 start-page: 491 issue: 3 year: 2011 end-page: 496 article-title: Pendrin: The thyrocyte apical membrane iodide transporter? publication-title: Cellular Physiology and Biochemistry – volume: 45 start-page: 6570 issue: 21 year: 2006 end-page: 6580 article-title: Cyan and yellow super fluorescent proteins with improved brightness, protein folding, and FRET Forster radius publication-title: Biochemistry – volume: 6 issue: 7 year: 2011 article-title: Establishment of a knock‐in mouse model with the SLC26A4 c.919‐2A>G mutation and characterization of its pathology publication-title: PLoS One – volume: 5 issue: 11 year: 2010 article-title: Failure of fluid absorption in the endolymphatic sac initiates cochlear enlargement that leads to deafness in mice lacking pendrin expression publication-title: PLoS One – volume: 52 start-page: 2482 issue: 14 year: 2013 end-page: 2491 article-title: Halide and proton binding kinetics of yellow fluorescent protein variants publication-title: Biochemistry – volume: 34 start-page: 42 issue: 1 year: 2013 end-page: 49 article-title: VariBench: A benchmark database for variations publication-title: Human Mutation – volume: 26 start-page: 851 issue: 6 year: 2010 end-page: 852 article-title: Easy retrieval of single amino‐acid polymorphisms and phenotype information using SwissVar publication-title: Bioinformatics – volume: 87 start-page: 1778 issue: 4 year: 2002 end-page: 1784 article-title: Mutations of the PDS gene, encoding pendrin, are associated with protein mislocalization and loss of iodide efflux: Implications for thyroid dysfunction in Pendred syndrome publication-title: The Journal of Clinical Endocrinology Metabolism – volume: 121 start-page: 4516 issue: 11 year: 2011 end-page: 4525 article-title: Mouse model of enlarged vestibular aqueducts defines temporal requirement of Slc26a4 expression for hearing acquisition publication-title: Journal of Clinical Investigation – volume: 36 start-page: 475 issue: 6 year: 1999 end-page: 477 article-title: Identification of two different mutations in the PDS gene in an inbred family with Pendred syndrome publication-title: Journal of Medical Genetics – volume: 9 issue: 7 year: 2013 article-title: SLC26A4 targeted to the endolymphatic sac rescues hearing and balance in Slc26a4 mutant mice publication-title: PLoS Genet – volume: 11 start-page: 916 issue: 12 year: 2003 end-page: 922 article-title: Distribution and frequencies of PDS (SLC26A4) mutations in Pendred syndrome and nonsyndromic hearing loss associated with enlarged vestibular aqueduct: A unique spectrum of mutations in Japanese publication-title: European Journal of Human Genetics – volume: 28 start-page: 467 issue: 3 year: 2011 end-page: 476 article-title: Identification of allelic variants of pendrin (SLC26A4) with loss and gain of function publication-title: Cellular Physiology and Biochemistry – volume: 126 start-page: E240 issue: 7 year: 2016 end-page: E247 article-title: Atypical patterns of segregation of familial enlargement of the vestibular aqueduct publication-title: Laryngoscope – volume: 9 issue: 1 year: 2013 article-title: Predicting Mendelian disease‐causing non‐synonymous single nucleotide variants in exome sequencing studies publication-title: PLoS Genet – volume: 25 start-page: 304 issue: 7–8 year: 2014 end-page: 316 article-title: Atrophic thyroid follicles and inner ear defects reminiscent of cochlear hypothyroidism in Slc26a4‐related deafness publication-title: Mammalian Genome – volume: 84 start-page: 291 year: 2015 end-page: 323 article-title: Mechanisms and regulation of alternative pre‐mRNA splicing publication-title: Annual Review of Biochemistry – volume: 38 start-page: 281 issue: 3 year: 2009 end-page: 290 article-title: Distinct and novel SLC26A4/Pendrin mutations in Chinese and U.S. patients with nonsyndromic hearing loss publication-title: Physiological Genomics – volume: 2 year: 2014 article-title: Mutation analysis of the SLC26A4, FOXI1 and KCNJ10 genes in individuals with congenital hearing loss publication-title: PeerJ – volume: 7 start-page: 11386 year: 2016 article-title: The HSP70 co‐chaperone DNAJC14 targets misfolded pendrin for unconventional protein secretion publication-title: Nature Communications – volume: 8 issue: 6 year: 2014 article-title: Differences in the pathogenicity of the p.H723R mutation of the common deafness‐associated SLC26A4 gene in humans and mice publication-title: PLoS One – volume: 59 start-page: 262 issue: 5 year: 2014 end-page: 268 article-title: Mutation spectrum and genotype–phenotype correlation of hearing loss patients caused by SLC26A4 mutations in the Japanese: A large cohort study publication-title: Journal of Human Genetics – volume: 124 start-page: E134 issue: 4 year: 2014 end-page: E140 article-title: Subgroups of enlarged vestibular aqueduct in relation to SLC26A4 mutations and hearing loss publication-title: Laryngoscope – volume: 28 start-page: 477 issue: 3 year: 2011 end-page: 484 article-title: Functional characterization of pendrin mutations found in the Israeli and Palestinian populations publication-title: Cellular Physiology and Biochemistry – ident: e_1_2_8_17_1 doi: 10.1074/jbc.M110.120188 – ident: e_1_2_8_10_1 doi: 10.1002/humu.20884 – ident: e_1_2_8_9_1 doi: 10.1172/JCI59353 – ident: e_1_2_8_31_1 doi: 10.1002/biot.201400821 – ident: e_1_2_8_51_1 doi: 10.1093/hmg/9.11.1709 – ident: e_1_2_8_29_1 doi: 10.1038/nprot.2015.053 – ident: e_1_2_8_53_1 doi: 10.1021/bi3016839 – ident: e_1_2_8_57_1 doi: 10.1210/jcem.87.4.8435 – ident: e_1_2_8_8_1 doi: 10.1136/jmedgenet-2017-104721 – ident: e_1_2_8_14_1 doi: 10.1159/000335108 – ident: e_1_2_8_64_1 doi: 10.1136/jmg.2007.054635 – ident: e_1_2_8_52_1 doi: 10.1038/7783 – ident: e_1_2_8_58_1 doi: 10.1038/sj.ejhg.5201073 – ident: e_1_2_8_18_1 doi: 10.1093/hmg/10.2.153 – ident: e_1_2_8_28_1 doi: 10.1371/journal.pone.0069047 – ident: e_1_2_8_44_1 doi: 10.1002/lary.24368 – ident: e_1_2_8_46_1 doi: 10.1111/j.1399-0004.2004.00386.x – ident: e_1_2_8_3_1 doi: 10.1371/journal.pcbi.1003440 – ident: e_1_2_8_12_1 doi: 10.1152/physiolgenomics.00047.2009 – volume: 36 start-page: 475 issue: 6 year: 1999 ident: e_1_2_8_11_1 article-title: Identification of two different mutations in the PDS gene in an inbred family with Pendred syndrome publication-title: Journal of Medical Genetics contributor: fullname: Coucke P. J. – ident: e_1_2_8_33_1 doi: 10.1074/jbc.RA118.001831 – ident: e_1_2_8_2_1 doi: 10.1038/nmeth0410-248 – ident: e_1_2_8_49_1 doi: 10.1038/gim.2015.30 – ident: e_1_2_8_40_1 doi: 10.1073/pnas.1511585112 – ident: e_1_2_8_41_1 doi: 10.1038/jhg.2014.12 – ident: e_1_2_8_23_1 doi: 10.1038/ncomms4622 – ident: e_1_2_8_26_1 doi: 10.1016/j.heares.2010.08.015 – ident: e_1_2_8_13_1 doi: 10.2119/molmed.2015.00226 – ident: e_1_2_8_24_1 doi: 10.1017/S1431927613000457 – ident: e_1_2_8_45_1 doi: 10.1002/humu.23630 – ident: e_1_2_8_60_1 doi: 10.7554/eLife.46986 – ident: e_1_2_8_42_1 doi: 10.1093/bioinformatics/btq028 – ident: e_1_2_8_56_1 doi: 10.1007/s00109-016-1410-7 – ident: e_1_2_8_6_1 doi: 10.1002/humu.23384 – ident: e_1_2_8_55_1 doi: 10.1007/s00439-017-1779-6 – ident: e_1_2_8_63_1 doi: 10.1086/518314 – ident: e_1_2_8_50_1 doi: 10.1002/humu.22204 – ident: e_1_2_8_62_1 doi: 10.1016/j.ajhg.2009.04.014 – ident: e_1_2_8_36_1 doi: 10.1371/journal.pgen.1003143 – ident: e_1_2_8_43_1 doi: 10.1002/lary.25737 – ident: e_1_2_8_61_1 doi: 10.1016/j.heares.2004.08.007 – ident: e_1_2_8_35_1 doi: 10.1146/annurev-biochem-060614-034316 – ident: e_1_2_8_32_1 doi: 10.1021/bi0516273 – ident: e_1_2_8_16_1 doi: 10.1007/s00335-014-9515-1 – ident: e_1_2_8_37_1 doi: 10.1371/journal.pgen.1003641 – ident: e_1_2_8_20_1 doi: 10.1016/S0014-5793(01)02561-3 – ident: e_1_2_8_54_1 doi: 10.1152/ajprenal.2001.280.2.F356 – ident: e_1_2_8_22_1 doi: 10.1089/thy.2005.734 – ident: e_1_2_8_34_1 doi: 10.1111/cge.12273 – ident: e_1_2_8_21_1 doi: 10.1038/nsmb.3091 – ident: e_1_2_8_19_1 doi: 10.1038/ng1297-411 – ident: e_1_2_8_59_1 doi: 10.1159/000335110 – ident: e_1_2_8_7_1 doi: 10.1515/hsz-2016-0254 – ident: e_1_2_8_5_1 doi: 10.1159/000335103 – ident: e_1_2_8_27_1 doi: 10.1038/ncomms11386 – ident: e_1_2_8_48_1 doi: 10.1136/jmg.2004.024208 – ident: e_1_2_8_25_1 doi: 10.1074/jbc.M112.411579 – ident: e_1_2_8_47_1 doi: 10.7717/peerj.384 – ident: e_1_2_8_15_1 doi: 10.1159/000335109 – ident: e_1_2_8_4_1 doi: 10.1016/j.ijporl.2012.02.053 – ident: e_1_2_8_38_1 doi: 10.1371/journal.pone.0022150 – ident: e_1_2_8_39_1 doi: 10.1371/journal.pone.0064906 – ident: e_1_2_8_30_1 doi: 10.1371/journal.pone.0014041 |
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Snippet | Thanks to the advent of rapid DNA sequencing technology and its prevalence, many disease‐associated genetic variants are rapidly identified in many genes from... Thanks to the advent of rapid DNA sequencing technology and its prevalence, many disease-associated genetic variants are rapidly identified in many genes from... |
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SubjectTerms | Cell Line Cell lines Chloride-Bicarbonate Antiporters - genetics Chloride-Bicarbonate Antiporters - metabolism DFNB4 DNA sequencing Doxycycline Fluorescent Antibody Technique Gene Expression Genetic Association Studies - methods Genetic diversity Genetic Predisposition to Disease Genetic Variation Hearing loss hereditary hearing loss Humans Immunohistochemistry Inner ear Models, Molecular mRNA Mutation, Missense Pathogenicity Pendred syndrome pendrin Protein Conformation RNA Splicing SLC26A4 Splicing Structure-Activity Relationship Sulfate Transporters - chemistry Sulfate Transporters - genetics Sulfate Transporters - metabolism |
Title | Systematic quantification of the anion transport function of pendrin (SLC26A4) and its disease‐associated variants |
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