Cellular architecture of evolving neuroinflammatory lesions and multiple sclerosis pathology

Multiple sclerosis (MS) is a neurological disease characterized by multifocal lesions and smoldering pathology. Although single-cell analyses provided insights into cytopathology, evolving cellular processes underlying MS remain poorly understood. We investigated the cellular dynamics of MS by model...

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Published inCell Vol. 187; no. 8; pp. 1990 - 2009.e19
Main Authors Kukanja, Petra, Langseth, Christoffer M., Rubio Rodríguez-Kirby, Leslie A., Agirre, Eneritz, Zheng, Chao, Raman, Amitha, Yokota, Chika, Avenel, Christophe, Tiklová, Katarina, Guerreiro-Cacais, André O., Olsson, Tomas, Hilscher, Markus M., Nilsson, Mats, Castelo-Branco, Gonçalo
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LanguageEnglish
Published United States Elsevier Inc 11.04.2024
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Abstract Multiple sclerosis (MS) is a neurological disease characterized by multifocal lesions and smoldering pathology. Although single-cell analyses provided insights into cytopathology, evolving cellular processes underlying MS remain poorly understood. We investigated the cellular dynamics of MS by modeling temporal and regional rates of disease progression in mouse experimental autoimmune encephalomyelitis (EAE). By performing single-cell spatial expression profiling using in situ sequencing (ISS), we annotated disease neighborhoods and found centrifugal evolution of active lesions. We demonstrated that disease-associated (DA)-glia arise independently of lesions and are dynamically induced and resolved over the disease course. Single-cell spatial mapping of human archival MS spinal cords confirmed the differential distribution of homeostatic and DA-glia, enabled deconvolution of active and inactive lesions into sub-compartments, and identified new lesion areas. By establishing a spatial resource of mouse and human MS neuropathology at a single-cell resolution, our study unveils the intricate cellular dynamics underlying MS. [Display omitted] •ISS elucidates cellular dynamics of EAE model and architecture of human MS lesions•Active EAE lesions propagate in a centrifugal manner•EAE DA-glia are induced independently of lesions and dynamically resolved•Spatial preferences of glial states drive MS lesion compartmentalization Spatial mapping of mouse and human multiple sclerosis neuropathology at a single-cell resolution unveils the cellular architecture and dynamics underlying disease evolution.
AbstractList Multiple sclerosis (MS) is a neurological disease characterized by multifocal lesions and smoldering pathology. Although single-cell analyses provided insights into cytopathology, evolving cellular processes underlying MS remain poorly understood. We investigated the cellular dynamics of MS by modeling temporal and regional rates of disease progression in mouse experimental autoimmune encephalomyelitis (EAE). By performing single-cell spatial expression profiling using in situ sequencing (ISS), we annotated disease neighborhoods and found centrifugal evolution of active lesions. We demonstrated that disease-associated (DA)-glia arise independently of lesions and are dynamically induced and resolved over the disease course. Single-cell spatial mapping of human archival MS spinal cords confirmed the differential distribution of homeostatic and DA-glia, enabled deconvolution of active and inactive lesions into sub-compartments, and identified new lesion areas. By establishing a spatial resource of mouse and human MS neuropathology at a single-cell resolution, our study unveils the intricate cellular dynamics underlying MS.Multiple sclerosis (MS) is a neurological disease characterized by multifocal lesions and smoldering pathology. Although single-cell analyses provided insights into cytopathology, evolving cellular processes underlying MS remain poorly understood. We investigated the cellular dynamics of MS by modeling temporal and regional rates of disease progression in mouse experimental autoimmune encephalomyelitis (EAE). By performing single-cell spatial expression profiling using in situ sequencing (ISS), we annotated disease neighborhoods and found centrifugal evolution of active lesions. We demonstrated that disease-associated (DA)-glia arise independently of lesions and are dynamically induced and resolved over the disease course. Single-cell spatial mapping of human archival MS spinal cords confirmed the differential distribution of homeostatic and DA-glia, enabled deconvolution of active and inactive lesions into sub-compartments, and identified new lesion areas. By establishing a spatial resource of mouse and human MS neuropathology at a single-cell resolution, our study unveils the intricate cellular dynamics underlying MS.
Multiple sclerosis (MS) is a neurological disease characterized by multifocal lesions and smoldering pathology. Although single-cell analyses provided insights into cytopathology, evolving cellular processes underlying MS remain poorly understood. We investigated the cellular dynamics of MS by modeling temporal and regional rates of disease progression in mouse experimental autoimmune encephalomyelitis (EAE). By performing single-cell spatial expression profiling using  in situ  sequencing (ISS), we annotated disease neighborhoods and found centrifugal evolution of active lesions. We demonstrated that disease-associated (DA)-glia arise independently of lesions and are dynamically induced and resolved over the disease course. Single-cell spatial mapping of human archival MS spinal cords confirmed the differential distribution of homeostatic and DA-glia, enabled deconvolution of active and inactive lesions into sub-compartments, and identified new lesion areas. By establishing a spatial resource of mouse and human MS neuropathology at a single-cell resolution, our study unveils the intricate cellular dynamics underlying MS.
Multiple sclerosis (MS) is a neurological disease characterized by multifocal lesions and smoldering pathology. Although single -cell analyses provided insights into cytopathology, evolving cellular processes underlying MS remain poorly understood. We investigated the cellular dynamics of MS by modeling temporal and regional rates of disease progression in mouse experimental autoimmune encephalomyelitis (EAE). By performing single -cell spatial expression profiling using in situ sequencing (ISS), we annotated disease neighborhoods and found centrifugal evolution of active lesions. We demonstrated that disease -associated (DA)-glia arise independently of lesions and are dynamically induced and resolved over the disease course. Single -cell spatial mapping of human archival MS spinal cords confirmed the differential distribution of homeostatic and DA-glia, enabled deconvolution of active and inactive lesions into sub -compartments, and identified new lesion areas. By establishing a spatial resource of mouse and human MS neuropathology at a single -cell resolution, our study unveils the intricate cellular dynamics underlying MS.
Multiple sclerosis (MS) is a neurological disease characterized by multifocal lesions and smoldering pathology. Although single-cell analyses provided insights into cytopathology, evolving cellular processes underlying MS remain poorly understood. We investigated the cellular dynamics of MS by modeling temporal and regional rates of disease progression in mouse experimental autoimmune encephalomyelitis (EAE). By performing single-cell spatial expression profiling using in situ sequencing (ISS), we annotated disease neighborhoods and found centrifugal evolution of active lesions. We demonstrated that disease-associated (DA)-glia arise independently of lesions and are dynamically induced and resolved over the disease course. Single-cell spatial mapping of human archival MS spinal cords confirmed the differential distribution of homeostatic and DA-glia, enabled deconvolution of active and inactive lesions into sub-compartments, and identified new lesion areas. By establishing a spatial resource of mouse and human MS neuropathology at a single-cell resolution, our study unveils the intricate cellular dynamics underlying MS. [Display omitted] •ISS elucidates cellular dynamics of EAE model and architecture of human MS lesions•Active EAE lesions propagate in a centrifugal manner•EAE DA-glia are induced independently of lesions and dynamically resolved•Spatial preferences of glial states drive MS lesion compartmentalization Spatial mapping of mouse and human multiple sclerosis neuropathology at a single-cell resolution unveils the cellular architecture and dynamics underlying disease evolution.
Author Zheng, Chao
Guerreiro-Cacais, André O.
Langseth, Christoffer M.
Kukanja, Petra
Avenel, Christophe
Agirre, Eneritz
Tiklová, Katarina
Hilscher, Markus M.
Raman, Amitha
Rubio Rodríguez-Kirby, Leslie A.
Yokota, Chika
Nilsson, Mats
Olsson, Tomas
Castelo-Branco, Gonçalo
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  givenname: Christoffer M.
  surname: Langseth
  fullname: Langseth, Christoffer M.
  email: christoffer.langseth@scilifelab.se
  organization: Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, Solna, 17154 Stockholm, Sweden
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  givenname: Leslie A.
  surname: Rubio Rodríguez-Kirby
  fullname: Rubio Rodríguez-Kirby, Leslie A.
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  organization: Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, Solna, 17154 Stockholm, Sweden
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  surname: Yokota
  fullname: Yokota, Chika
  organization: Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, Solna, 17154 Stockholm, Sweden
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  organization: Department of Information Technology, Uppsala University, 752 37 Uppsala, Sweden
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  fullname: Tiklová, Katarina
  organization: Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, Solna, 17154 Stockholm, Sweden
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  givenname: André O.
  surname: Guerreiro-Cacais
  fullname: Guerreiro-Cacais, André O.
  organization: Center for Molecular Medicine, Department of Clinical Neuroscience, Karolinska Institutet, Karolinska University Hospital, 171 76 Solna, Sweden
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  givenname: Tomas
  surname: Olsson
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  organization: Center for Molecular Medicine, Department of Clinical Neuroscience, Karolinska Institutet, Karolinska University Hospital, 171 76 Solna, Sweden
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  surname: Nilsson
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  email: mats.nilsson@scilifelab.se
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  fullname: Castelo-Branco, Gonçalo
  email: goncalo.castelo-branco@ki.se
  organization: Laboratory of Molecular Neurobiology, Department of Medical Biochemistry and Biophysics, Biomedicum, Karolinska Institutet, 17177 Stockholm, Sweden
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Cites_doi 10.1038/s41586-019-0924-x
10.1523/JNEUROSCI.4689-06.2007
10.1016/j.cell.2018.06.021
10.1038/s41593-020-00783-4
10.1038/s41587-021-01139-4
10.1186/s12915-022-01325-z
10.1093/nar/gkaa792
10.1007/s00401-022-02497-2
10.1016/j.celrep.2018.02.003
10.1016/j.cell.2021.04.048
10.1038/s41586-022-05534-y
10.1212/01.wnl.0000313377.49555.2e
10.1002/glia.23684
10.1038/s41586-019-0903-2
10.1212/NXI.0000000000200046
10.1016/j.heliyon.2023.e15306
10.1038/s41593-022-01097-3
10.1038/nbt.3192
10.1111/j.1471-4159.2011.07536.x
10.1186/s13059-019-1663-x
10.1111/j.1600-065X.2012.01126.x
10.1038/s41467-020-19453-x
10.1038/s41467-021-25125-1
10.1084/jem.20221322
10.1038/s41593-020-0637-3
10.1038/s41592-018-0216-7
10.1016/j.celrep.2022.111189
10.1172/JCI126809
10.1002/ana.22521
10.1111/j.1750-3639.2010.00444.x
10.1038/s41592-021-01358-2
10.1038/s41593-018-0141-1
10.1212/WNL.0000000000000560
10.1038/cdd.2014.35
10.7554/eLife.57520
10.1126/science.abj8222
10.1038/s41586-019-1404-z
10.1038/s41586-020-1999-0
10.1038/s42003-020-01247-y
10.1038/s41467-021-26044-x
10.1038/s41592-019-0631-4
10.1172/JCI86198
10.1007/s00401-019-02073-1
10.1038/s41586-018-0842-3
10.1038/s41586-021-03892-7
10.1093/brain/awy352
10.1038/s41583-023-00709-6
10.1523/JNEUROSCI.2572-06.2006
10.1038/nri3871
10.1038/s41582-023-00801-6
10.1038/s41591-018-0236-y
10.1038/nmeth.2563
10.1016/j.devcel.2018.07.005
10.1038/s41590-023-01522-0
10.1038/s41467-021-25585-5
10.1038/s41593-022-01183-6
10.1007/s00401-018-1818-y
10.1038/s41592-021-01264-7
10.1016/j.jneuroim.2006.11.015
10.1371/journal.pone.0076330
10.1093/brain/awac016
10.1111/j.1750-3639.1998.tb00194.x
10.1038/s41592-022-01657-2
10.1038/s41592-022-01728-4
10.1038/nn738
10.1101/cshperspect.a028936
10.3389/fncel.2020.00198
10.1046/j.1365-2990.2000.00217.x
10.1186/s13059-017-1382-0
10.1016/j.neuron.2023.03.031
10.1038/s41576-020-00292-x
10.1186/s40478-021-01306-3
10.1038/s41598-019-44682-6
10.1097/WNR.0000000000000920
10.1038/s41593-021-01009-x
10.1126/science.aaf6463
10.1186/s12974-015-0376-7
10.1002/dneu.22854
10.1056/NEJMoa1100648
10.1126/science.aat7554
10.1038/s41587-021-01182-1
10.1038/s41467-019-11638-3
10.1002/cne.21307
10.1073/pnas.1819343116
10.1038/s41467-021-21246-9
10.1093/brain/awz144
10.1016/S0140-6736(01)14668-4
10.1038/nrneurol.2016.187
10.1038/s41598-019-41695-z
10.1172/JCI114800
10.1093/brain/119.3.709
10.1007/s00401-016-1653-y
10.1126/science.aaa1934
10.1177/1352458515616700
10.1073/pnas.1219004110
10.1038/s41596-021-00573-7
10.1002/eji.1830250723
10.1007/978-3-030-00934-2_30
10.1098/rsob.200352
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Keywords Serpina3n
SERPINA3
in situ sequencing
experimental autoimmune encephalomyelitis
disease-associated glia
neuroinflammation
multiple sclerosis
MS
single-cell
EAE
spatial sequencing
neuropathology
Language English
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Copyright © 2024 The Author(s). Published by Elsevier Inc. All rights reserved.
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References Distéfano-Gagné, Bitarafan, Lacroix, Gosselin (bib110) 2023; 24
Kyran, Robinson, Kocovski, Li, Dang, Hale, Orian (bib89) 2018; 29
Olsson, Barcellos, Alfredsson (bib1) 2017; 13
Lee, Marco Salas, Gyllborg, Nilsson (bib30) 2022; 12
Absinta, Sati, Schindler, Leibovitch, Ohayon, Wu, Meani, Filippi, Jacobson, Cortese (bib53) 2016; 126
Kasuga, Fudge, Zhang, Li (bib107) 2019; 67
Satija, Farrell, Gennert, Schier, Regev (bib38) 2015; 33
Palla, Fischer, Regev, Theis (bib92) 2022; 40
Armingol, Officer, Harismendy, Lewis (bib56) 2021; 22
Miedema, Gerrits, Brouwer, Jiang, Kracht, Meijer, Nutma, Peferoen-Baert, Pijnacker, Wesseling (bib81) 2022; 10
Tallantyre, Brookes, Dixon, Morgan, Evangelou, Morris (bib83) 2008; 70
Dugas, Tai, Speed, Ngai, Barres (bib105) 2006; 26
Lassmann (bib3) 2018; 8
Meyer, Giddens, Schaefer, Hall (bib60) 2013; 110
Marques, van Bruggen, Vanichkina, Floriddia, Munguba, Väremo, Giacomello, Falcão, Meijer, Björklund (bib106) 2018; 46
Gyllborg, Langseth, Qian, Choi, Salas, Hilscher, Lein, Nilsson (bib29) 2020; 48
Wernersson, Gelali, Girelli, Wang, Castillo, Langseth, Nguyen, Chattoraj, Casals, Lundberg (bib94) 2022
Nicovich, Taormina, Baker, Nguyen, Thomsen, Garren, Long, Gorham, Miller, Hage (bib98) 2019
Palla, Spitzer, Klein, Fischer, Schaar, Kuemmerle, Rybakov, Ibarra, Holmberg, Virshup (bib91) 2022; 19
Klotz, Antel, Kuhlmann (bib88) 2023; 19
Schirmer, Velmeshev, Holmqvist, Kaufmann, Werneburg, Jung, Vistnes, Stockley, Young, Steindel (bib11) 2019; 573
Lublin, Reingold, Cohen, Cutter, Sørensen, Thompson, Wolinsky, Balcer, Banwell, Barkhof (bib6) 2014; 83
Lucchinetti, Popescu, Bunyan, Moll, Roemer, Lassmann, Brück, Parisi, Scheithauer, Giannini (bib41) 2011; 365
Williams, Buchheit, Berman, LeVine (bib77) 2012; 120
Jurga, Paleczna, Kuter (bib111) 2020; 14
Wolf, Hamey, Plass, Solana, Dahlin, Göttgens, Rajewsky, Simon, Theis (bib54) 2019; 20
McNamara, Munro, Bestard-Cuche, Uyeda, Bogie, Hoffmann, Holloway, Molina-Gonzalez, Askew, Mitchell (bib82) 2023; 613
Pandey, Shen, Lee, Shen, Wang, Otero-García, Kotova, Vito, Laufer, Newton (bib20) 2022; 40
Yeung, Djelloul, Steiner, Bernard, Salehpour, Possnert, Brundin, Frisén (bib65) 2019; 566
Absinta, Maric, Gharagozloo, Garton, Smith, Jin, Fitzgerald, Song, Liu, Lin (bib15) 2021; 597
Wolf, Angerer, Theis (bib90) 2018; 19
Virshup, Rybakov, Theis, Angerer, Wolf (bib100) 2021
Neely, Williamson, Klingseisen, Zoupi, Early, Williams, Lyons (bib66) 2022; 25
Wheeler, Clark, Tjon, Li, Zandee, Couturier, Watson, Scalisi, Alkwai, Rothhammer (bib22) 2020; 578
Mendel, Kerlero de Rosbo, Ben-Nun (bib31) 1995; 25
Mistry, Abdel-Fahim, Samaraweera, Mougin, Tallantyre, Tench, Jaspan, Morris, Morgan, Evangelou (bib84) 2016; 22
Bjornevik, Cortese, Healy, Kuhle, Mina, Leng, Elledge, Niebuhr, Scher, Munger (bib2) 2022; 375
Storch, Stefferl, Brehm, Weissert, Wallström, Kerschensteiner, Olsson, Linington, Lassmann (bib45) 1998; 8
Traag, Waltman, van Eck (bib101) 2019; 9
Kuhlmann, Ludwin, Prat, Antel, Brück, Lassmann (bib9) 2017; 133
Escartin, Galea, Lakatos, O’Callaghan, Petzold, Serrano-Pozo, Steinhäuser, Volterra, Carmignoto, Agarwal (bib112) 2021; 24
He, Tang, Huang, Ren, Zhou, Chen, Liu, Shi, Lin, Li (bib46) 2021; 12
Pielawski, Andersson, Avenel, Behanova, Chelebian, Klemm, Nysjö, Solorzano, Wählby (bib93) 2023; 9
Kaya, Mattugini, Liu, Ji, Cantuti-Castelvetri, Wu, Schifferer, Groh, Martini, Besson-Girard (bib79) 2022; 25
Chen, Neumann, Förster, Franklin (bib109) 2021; 11
Ruiz-Moreno, Salas, Samuelsson, Brandner, Kranendonk, Nilsson, Stunnenberg (bib49) 2022
Moriel, Senel, Friedman, Rajewsky, Karaiskos, Nitzan (bib37) 2021; 16
Lee, Ha, Sati, Absinta, Nair, Luciano, Leibovitch, Yen, Rouault, Silva (bib76) 2019; 129
Trobisch, Zulji, Stevens, Schwarz, Wischnewski, Öztürk, Perales-Patón, Haeussler, Saez-Rodriguez, Velmeshev (bib12) 2022; 144
Hilscher, Langseth, Kukanja, Yokota, Nilsson, Castelo-Branco (bib72) 2022; 20
Dendrou, Fugger, Friese (bib5) 2015; 15
Dawson (bib52) 1916; 187
Balabanov, Strand, Goswami, McMahon, Begolka, Miller, Popko (bib58) 2007; 27
Dias, Kalkitsas, Kelahmetoglu, Estrada, Tatarishvili, Holl, Jansson, Banitalebi, Amiry-Moghaddam, Ernst (bib51) 2021; 12
Kirby, Jin, Cardona, Smith, Martin, Wang, Strasburger, Herbst, Alexis, Karnell (bib23) 2019; 10
Mangiardi, Crawford, Xia, Du, Simon-Freeman, Voskuhl, Tiwari-Woodruff (bib50) 2011; 21
Jeong, Diéguez-Hurtado, Arf, Song, Park, Kruse, Sorokin, Adams (bib18) 2022; 11
Marques, Zeisel, Codeluppi, van Bruggen, Mendanha Falcão, Xiao, Li, Häring, Hochgerner, Romanov (bib32) 2016; 352
Falcão, van Bruggen, Marques, Meijer, Jäkel, Agirre, Samudyata, Floriddia, Vanichkina, Ffrench-Constant (bib14) 2018; 24
Fournier, Tastet, Charabati, Hoornaert, Bourbonnière, Klement, Larouche, Tea, Wang, Larochelle (bib17) 2023; 10
Lublin, Häring, Ganjgahi, Ocampo, Hatami, Čuklina, Aarden, Dahlke, Arnold, Wiendl (bib86) 2022; 145
Aevermann, Zhang, Novotny, Bakken, Miller, Hodge, Lelieveldt, Lein, Scheuermann (bib97) 2020
Zeisel, Hochgerner, Lönnerberg, Johnsson, Memic, van der Zwan, Häring, Braun, Borm, La Manno (bib33) 2018; 174
Andersson, Bergenstråhle, Asp, Bergenstråhle, Jurek, Fernández Navarro, Lundeberg (bib27) 2020; 3
Haile, Carmine-Simmen, Olechowski, Kerr, Bleackley, Giuliani (bib55) 2015; 12
Muhlich, Chen, Russell, Sorger (bib99) 2021
Shi, He, Zhou, Huang, Wang, Tang, Tan, Wu, Lin, Ren (bib47) 2022
Hamilton, Forkert, Yang, Wu, Rogers, Yong, Dunn (bib40) 2019; 9
Hao, Hao, Andersen-Nissen, Mauck, Zheng, Butler, Lee, Wilk, Darby, Zager (bib113) 2021; 184
Baydyuk, Cha, Hu, Yamazaki, Miller, Smith, Kelly, Huang (bib44) 2019; 116
Lassmann (bib10) 2018; 9
Bonora, De Marchi, Patergnani, Suski, Celsi, Bononi, Giorgi, Marchi, Rimessi, Duszyński (bib63) 2014; 21
Fernández-Castañeda, Chappell, Rosen, Seki, Beiter, Johanson, Liskey, Farber, Onengut-Gumuscu, Overall (bib24) 2020; 139
Valk, Groot (bib8) 2000; 26
Sathyamurthy, Johnson, Matson, Dobrott, Li, Ryba, Bergman, Kelly, Kelley, Levine (bib103) 2018; 22
Peterson, Fujinami (bib4) 2007; 184
Gupta, Utoft, Hasseldam, Schmidt-Christensen, Hannibal, Hansen, Fransén-Pettersson, Agarwal-Gupta, Rozell, Andersson (bib74) 2013; 8
Ke, Mignardi, Pacureanu, Svedlund, Botling, Wählby, Nilsson (bib28) 2013; 10
An, Zhang, Fudge, Lu, Richardson, Li (bib61) 2021; 81
Qian, Harris, Hauling, Nicoloutsopoulos, Muñoz-Manchado, Skene, Hjerling-Leffler, Nilsson (bib35) 2019; 17
Kleshchevnikov, Shmatko, Dann, Aivazidis, King, Li, Elmentaite, Lomakin, Kedlian, Gayoso (bib36) 2022; 40
Mendiola, Yan, Dixit, Johnson, Bouhaddou, Meyer-Franke, Shin, Yong, Agrawal, MacDonald (bib85) 2023; 24
Jordão, Sankowski, Brendecke, Sagar, Locatelli, Tai, Tay, Schramm, Armbruster, Hagemeyer (bib21) 2019; 363
Russ, Cross, Li, Koch, Matson, Yadav, Alkaslasi, Lee, Le Pichon, Menon (bib104) 2021; 12
Moll, Rietsch, Thomas, Ransohoff, Lee, Fox, Chang, Ransohoff, Fisher (bib80) 2011; 70
Filippi, Preziosa, Banwell, Barkhof, Ciccarelli, De Stefano, Geurts, Paul, Reich, Toosy (bib42) 2019; 142
Siletti, Hodge, Albiach, Hu, Lee, Lönnerberg, Bakken, Ding, Clark, Casper (bib70) 2022
Brown, Sawchenko (bib75) 2007; 502
Yang, Vainshtein, Maik-Rachline, Peles (bib64) 2016; 7
Bacmeister, Barr, McClain, Thornton, Nettles, Welle, Hughes (bib67) 2020; 23
Thorpe, Kidd, Moseley, Thompson, MacManus, Compston, McDonald, Miller (bib7) 1996; 119
Schmidt, Weigert, Broaddus, Myers (bib96) 2018
Masuda, Sankowski, Staszewski, Böttcher, Amann, Sagar, Scheiwe, Nessler, Kunz, van Loo (bib16) 2019; 566
Eden, Gros, Badji, Dupont, De Leener, Maranzano, Zhuoquiong, Liu, Granberg, Ouellette (bib43) 2019; 142
Lerma-Martin, Badia-i-Mompel, Flores, Sekol, Hofmann, Thäwel, Riedl, Wünnemann, Ibarra-Arellano, Trobisch (bib26) 2022
Jäkel, Agirre, Mendanha Falcão, van Bruggen, Lee, Knuesel, Malhotra, ffrench-Constant, Williams, Castelo-Branco (bib13) 2019; 566
Kim, Rustam, Mosquera, Randell, Shaykhiev, Rendeiro, Elemento (bib48) 2022; 19
Arnett, Mason, Marino, Suzuki, Matsushima, Ting (bib62) 2001; 4
Jin, Guerrero-Juarez, Zhang, Chang, Ramos, Kuan, Myung, Plikus, Nie (bib114) 2021; 12
Biancalani, Scalia, Buffoni, Avasthi, Lu, Sanger, Tokcan, Vanderburg, Segerstolpe, Zhang (bib34) 2021; 18
Mezydlo, Treiber, Gavilanes, Eichenseer, Ancău, Wens, Carral, Schifferer, Snaidero, Misgeld (bib68) 2023; 111
Olsson, Zhi, Höjeberg, Kostulas, Jiang, Anderson, Ekre, Link (bib59) 1990; 86
Floriddia, Lourenço, Zhang, van Bruggen, Hilscher, Kukanja, dos Gonçalves Dos Santos, Altınkök, Yokota, Llorens-Bobadilla (bib71) 2020; 11
Kaufmann, Schaupp, Sun, Coscia, Dendrou, Cortes, Kaur, Evans, Mollbrink, Navarro (bib25) 2022; 25
Zeisel, Muñoz-Manchado, Codeluppi, Lönnerberg, La Manno, Juréus, Marques, Munguba, He, Betsholtz (bib108) 2015; 347
Lindsey (bib39) 2005
Giovannoni, Popescu, Wuerfel, Hellwig, Iacobaeus, Jensen, García-Domínguez, Sousa, Rossi, Hupperts (bib87) 2022; 15
Luchetti, Fransen, van Eden, Ramaglia, Mason, Huitinga (bib69) 2018; 135
Pierson, Simmons, Castelli, Goverman (bib78) 2012; 248
Häring, Zeisel, Hochgerner, Rinwa, Jakobsson, Lönnerberg, La Manno, Sharma, Borgius, Kiehn (bib102) 2018; 21
Cang, Zhao, Almet, Stabell, Ramos, Plikus, Atwood, Nie (bib57) 2023; 20
Weigert, Schmidt, Boothe, Müller, Dibrov, Jain, Wilhelm, Schmidt, Broaddus, Culley (bib95) 2018; 15
Steinbrecher, Weber, Neuberger, Mueller, Pedré, Giegerich, Bogdahn, Jakob, Haase, Faber (bib73) 2005; 26
Steinman, Patarca, Haseltine (bib19) 2023; 220
Absinta (10.1016/j.cell.2024.02.030_bib53) 2016; 126
Biancalani (10.1016/j.cell.2024.02.030_bib34) 2021; 18
Wernersson (10.1016/j.cell.2024.02.030_bib94) 2022
Kasuga (10.1016/j.cell.2024.02.030_bib107) 2019; 67
Moll (10.1016/j.cell.2024.02.030_bib80) 2011; 70
Absinta (10.1016/j.cell.2024.02.030_bib15) 2021; 597
Balabanov (10.1016/j.cell.2024.02.030_bib58) 2007; 27
Arnett (10.1016/j.cell.2024.02.030_bib62) 2001; 4
Virshup (10.1016/j.cell.2024.02.030_bib100) 2021
Sathyamurthy (10.1016/j.cell.2024.02.030_bib103) 2018; 22
Jin (10.1016/j.cell.2024.02.030_bib114) 2021; 12
Brown (10.1016/j.cell.2024.02.030_bib75) 2007; 502
Kuhlmann (10.1016/j.cell.2024.02.030_bib9) 2017; 133
Hamilton (10.1016/j.cell.2024.02.030_bib40) 2019; 9
Bjornevik (10.1016/j.cell.2024.02.030_bib2) 2022; 375
Williams (10.1016/j.cell.2024.02.030_bib77) 2012; 120
Yeung (10.1016/j.cell.2024.02.030_bib65) 2019; 566
Mendiola (10.1016/j.cell.2024.02.030_bib85) 2023; 24
Lublin (10.1016/j.cell.2024.02.030_bib86) 2022; 145
Jurga (10.1016/j.cell.2024.02.030_bib111) 2020; 14
Häring (10.1016/j.cell.2024.02.030_bib102) 2018; 21
Schmidt (10.1016/j.cell.2024.02.030_bib96) 2018
Moriel (10.1016/j.cell.2024.02.030_bib37) 2021; 16
Peterson (10.1016/j.cell.2024.02.030_bib4) 2007; 184
Chen (10.1016/j.cell.2024.02.030_bib109) 2021; 11
Giovannoni (10.1016/j.cell.2024.02.030_bib87) 2022; 15
Andersson (10.1016/j.cell.2024.02.030_bib27) 2020; 3
Palla (10.1016/j.cell.2024.02.030_bib91) 2022; 19
Nicovich (10.1016/j.cell.2024.02.030_bib98) 2019
Jeong (10.1016/j.cell.2024.02.030_bib18) 2022; 11
Jäkel (10.1016/j.cell.2024.02.030_bib13) 2019; 566
Lucchinetti (10.1016/j.cell.2024.02.030_bib41) 2011; 365
Mangiardi (10.1016/j.cell.2024.02.030_bib50) 2011; 21
Pandey (10.1016/j.cell.2024.02.030_bib20) 2022; 40
Ruiz-Moreno (10.1016/j.cell.2024.02.030_bib49) 2022
Marques (10.1016/j.cell.2024.02.030_bib32) 2016; 352
Baydyuk (10.1016/j.cell.2024.02.030_bib44) 2019; 116
Eden (10.1016/j.cell.2024.02.030_bib43) 2019; 142
Weigert (10.1016/j.cell.2024.02.030_bib95) 2018; 15
Lublin (10.1016/j.cell.2024.02.030_bib6) 2014; 83
Kaya (10.1016/j.cell.2024.02.030_bib79) 2022; 25
Shi (10.1016/j.cell.2024.02.030_bib47) 2022
He (10.1016/j.cell.2024.02.030_bib46) 2021; 12
Jordão (10.1016/j.cell.2024.02.030_bib21) 2019; 363
Satija (10.1016/j.cell.2024.02.030_bib38) 2015; 33
Olsson (10.1016/j.cell.2024.02.030_bib1) 2017; 13
Mistry (10.1016/j.cell.2024.02.030_bib84) 2016; 22
Lee (10.1016/j.cell.2024.02.030_bib76) 2019; 129
Gyllborg (10.1016/j.cell.2024.02.030_bib29) 2020; 48
Steinbrecher (10.1016/j.cell.2024.02.030_bib73) 2005; 26
Storch (10.1016/j.cell.2024.02.030_bib45) 1998; 8
Gupta (10.1016/j.cell.2024.02.030_bib74) 2013; 8
Wolf (10.1016/j.cell.2024.02.030_bib90) 2018; 19
Muhlich (10.1016/j.cell.2024.02.030_bib99) 2021
Dendrou (10.1016/j.cell.2024.02.030_bib5) 2015; 15
Fournier (10.1016/j.cell.2024.02.030_bib17) 2023; 10
Russ (10.1016/j.cell.2024.02.030_bib104) 2021; 12
Filippi (10.1016/j.cell.2024.02.030_bib42) 2019; 142
Floriddia (10.1016/j.cell.2024.02.030_bib71) 2020; 11
Wolf (10.1016/j.cell.2024.02.030_bib54) 2019; 20
Valk (10.1016/j.cell.2024.02.030_bib8) 2000; 26
Neely (10.1016/j.cell.2024.02.030_bib66) 2022; 25
Cang (10.1016/j.cell.2024.02.030_bib57) 2023; 20
Pielawski (10.1016/j.cell.2024.02.030_bib93) 2023; 9
Lassmann (10.1016/j.cell.2024.02.030_bib3) 2018; 8
Schirmer (10.1016/j.cell.2024.02.030_bib11) 2019; 573
Traag (10.1016/j.cell.2024.02.030_bib101) 2019; 9
Ke (10.1016/j.cell.2024.02.030_bib28) 2013; 10
Mezydlo (10.1016/j.cell.2024.02.030_bib68) 2023; 111
Qian (10.1016/j.cell.2024.02.030_bib35) 2019; 17
Armingol (10.1016/j.cell.2024.02.030_bib56) 2021; 22
Kleshchevnikov (10.1016/j.cell.2024.02.030_bib36) 2022; 40
Miedema (10.1016/j.cell.2024.02.030_bib81) 2022; 10
Tallantyre (10.1016/j.cell.2024.02.030_bib83) 2008; 70
Steinman (10.1016/j.cell.2024.02.030_bib19) 2023; 220
Yang (10.1016/j.cell.2024.02.030_bib64) 2016; 7
Mendel (10.1016/j.cell.2024.02.030_bib31) 1995; 25
Dugas (10.1016/j.cell.2024.02.030_bib105) 2006; 26
McNamara (10.1016/j.cell.2024.02.030_bib82) 2023; 613
Zeisel (10.1016/j.cell.2024.02.030_bib33) 2018; 174
An (10.1016/j.cell.2024.02.030_bib61) 2021; 81
Palla (10.1016/j.cell.2024.02.030_bib92) 2022; 40
Pierson (10.1016/j.cell.2024.02.030_bib78) 2012; 248
Marques (10.1016/j.cell.2024.02.030_bib106) 2018; 46
Hilscher (10.1016/j.cell.2024.02.030_bib72) 2022; 20
Escartin (10.1016/j.cell.2024.02.030_bib112) 2021; 24
Lassmann (10.1016/j.cell.2024.02.030_bib10) 2018; 9
Lindsey (10.1016/j.cell.2024.02.030_bib39) 2005
Zeisel (10.1016/j.cell.2024.02.030_bib108) 2015; 347
Lee (10.1016/j.cell.2024.02.030_bib30) 2022; 12
Distéfano-Gagné (10.1016/j.cell.2024.02.030_bib110) 2023; 24
Thorpe (10.1016/j.cell.2024.02.030_bib7) 1996; 119
Trobisch (10.1016/j.cell.2024.02.030_bib12) 2022; 144
Kyran (10.1016/j.cell.2024.02.030_bib89) 2018; 29
Masuda (10.1016/j.cell.2024.02.030_bib16) 2019; 566
Lerma-Martin (10.1016/j.cell.2024.02.030_bib26) 2022
Aevermann (10.1016/j.cell.2024.02.030_bib97) 2020
Hao (10.1016/j.cell.2024.02.030_bib113) 2021; 184
Falcão (10.1016/j.cell.2024.02.030_bib14) 2018; 24
Kirby (10.1016/j.cell.2024.02.030_bib23) 2019; 10
Haile (10.1016/j.cell.2024.02.030_bib55) 2015; 12
Bacmeister (10.1016/j.cell.2024.02.030_bib67) 2020; 23
Olsson (10.1016/j.cell.2024.02.030_bib59) 1990; 86
Meyer (10.1016/j.cell.2024.02.030_bib60) 2013; 110
Fernández-Castañeda (10.1016/j.cell.2024.02.030_bib24) 2020; 139
Siletti (10.1016/j.cell.2024.02.030_bib70) 2022
Wheeler (10.1016/j.cell.2024.02.030_bib22) 2020; 578
Dias (10.1016/j.cell.2024.02.030_bib51) 2021; 12
Kim (10.1016/j.cell.2024.02.030_bib48) 2022; 19
Luchetti (10.1016/j.cell.2024.02.030_bib69) 2018; 135
Bonora (10.1016/j.cell.2024.02.030_bib63) 2014; 21
Dawson (10.1016/j.cell.2024.02.030_bib52) 1916; 187
Klotz (10.1016/j.cell.2024.02.030_bib88) 2023; 19
Kaufmann (10.1016/j.cell.2024.02.030_bib25) 2022; 25
References_xml – volume: 12
  year: 2021
  ident: bib46
  article-title: ClusterMap for multi-scale clustering analysis of spatial gene expression
  publication-title: Nat. Commun.
– volume: 578
  start-page: 593
  year: 2020
  end-page: 599
  ident: bib22
  article-title: MAFG-driven astrocytes promote CNS inflammation
  publication-title: Nature
– volume: 12
  year: 2015
  ident: bib55
  article-title: Granzyme B-inhibitor serpina3n induces neuroprotection in vitro and in vivo
  publication-title: J. Neuroinflammation
– volume: 566
  start-page: 538
  year: 2019
  end-page: 542
  ident: bib65
  article-title: Dynamics of oligodendrocyte generation in multiple sclerosis
  publication-title: Nature
– year: 2022
  ident: bib49
  article-title: Harmonized single-cell landscape, intercellular crosstalk and tumor architecture of glioblastoma
  publication-title: bioRxiv
– volume: 20
  year: 2022
  ident: bib72
  article-title: Spatial and temporal heterogeneity in the lineage progression of fine oligodendrocyte subtypes
  publication-title: BMC Biol.
– volume: 24
  start-page: 1173
  year: 2023
  end-page: 1187
  ident: bib85
  article-title: Defining blood-induced microglia functions in neurodegeneration through multiomic profiling
  publication-title: Nat. Immunol.
– volume: 40
  start-page: 308
  year: 2022
  end-page: 318
  ident: bib92
  article-title: Spatial components of molecular tissue biology
  publication-title: Nat. Biotechnol.
– volume: 67
  start-page: 2166
  year: 2019
  end-page: 2177
  ident: bib107
  article-title: Characterization of a long noncoding RNA Pcdh17it as a novel marker for immature premyelinating oligodendrocytes
  publication-title: Glia
– volume: 70
  start-page: 2076
  year: 2008
  end-page: 2078
  ident: bib83
  article-title: Demonstrating the perivascular distribution of MS lesions in vivo with 7-tesla MRI
  publication-title: Neurology
– volume: 187
  start-page: 1090
  year: 1916
  end-page: 1091
  ident: bib52
  article-title: The histology of disseminated sclerosis
  publication-title: Lancet
– volume: 19
  start-page: 1653
  year: 2022
  end-page: 1661
  ident: bib48
  article-title: Unsupervised discovery of tissue architecture in multiplexed imaging
  publication-title: Nat. Methods
– volume: 142
  start-page: 1858
  year: 2019
  end-page: 1875
  ident: bib42
  article-title: Assessment of lesions on magnetic resonance imaging in multiple sclerosis: practical guidelines
  publication-title: Brain
– year: 2021
  ident: bib100
  article-title: anndata: Annotated data
  publication-title: bioRxiv
– volume: 83
  start-page: 278
  year: 2014
  end-page: 286
  ident: bib6
  article-title: Defining the clinical course of multiple sclerosis: the 2013 revisions
  publication-title: Neurology
– volume: 70
  start-page: 764
  year: 2011
  end-page: 773
  ident: bib80
  article-title: Multiple sclerosis normal-appearing white matter: pathology–imaging correlations
  publication-title: Ann. Neurol.
– volume: 40
  year: 2022
  ident: bib20
  article-title: Disease-associated oligodendrocyte responses across neurodegenerative diseases
  publication-title: Cell Rep.
– volume: 12
  year: 2021
  ident: bib104
  article-title: A harmonized atlas of mouse spinal cord cell types and their spatial organization
  publication-title: Nat. Commun.
– volume: 116
  start-page: 14290
  year: 2019
  end-page: 14299
  ident: bib44
  article-title: Tracking the evolution of CNS remyelinating lesion in mice with neutral red dye
  publication-title: Proc. Natl. Acad. Sci. USA
– volume: 502
  start-page: 236
  year: 2007
  end-page: 260
  ident: bib75
  article-title: Time course and distribution of inflammatory and neurodegenerative events suggest structural bases for the pathogenesis of experimental autoimmune encephalomyelitis
  publication-title: J. Comp. Neurol.
– volume: 9
  year: 2019
  ident: bib40
  article-title: Central nervous system targeted autoimmunity causes regional atrophy: a 9.4T MRI study of the EAE mouse model of Multiple Sclerosis
  publication-title: Sci. Rep.
– volume: 133
  start-page: 13
  year: 2017
  end-page: 24
  ident: bib9
  article-title: An updated histological classification system for multiple sclerosis lesions
  publication-title: Acta Neuropathol.
– volume: 119
  start-page: 709
  year: 1996
  end-page: 714
  ident: bib7
  article-title: Spinal MRI in patients with suspected multiple sclerosis and negative brain MRI
  publication-title: Brain
– volume: 10
  year: 2022
  ident: bib81
  article-title: Brain macrophages acquire distinct transcriptomes in multiple sclerosis lesions and normal appearing white matter
  publication-title: Acta Neuropathol. Commun.
– volume: 23
  start-page: 819
  year: 2020
  end-page: 831
  ident: bib67
  article-title: Motor learning promotes remyelination via new and surviving oligodendrocytes
  publication-title: Nat. Neurosci.
– volume: 27
  start-page: 2013
  year: 2007
  end-page: 2024
  ident: bib58
  article-title: Interferon-γ-oligodendrocyte interactions in the regulation of experimental autoimmune encephalomyelitis
  publication-title: J. Neurosci.
– volume: 25
  start-page: 415
  year: 2022
  end-page: 420
  ident: bib66
  article-title: New oligodendrocytes exhibit more abundant and accurate myelin regeneration than those that survive demyelination
  publication-title: Nat. Neurosci.
– volume: 14
  year: 2020
  ident: bib111
  article-title: Overview of general and discriminating markers of differential microglia phenotypes
  publication-title: Front. Cell. Neurosci.
– volume: 26
  start-page: 10967
  year: 2006
  end-page: 10983
  ident: bib105
  article-title: Functional genomic analysis of oligodendrocyte differentiation
  publication-title: J. Neurosci.
– volume: 10
  year: 2019
  ident: bib23
  article-title: Oligodendrocyte precursor cells present antigen and are cytotoxic targets in inflammatory demyelination
  publication-title: Nat. Commun.
– volume: 25
  start-page: 1951
  year: 1995
  end-page: 1959
  ident: bib31
  article-title: A myelin oligodendrocyte glycoprotein peptide induces typical chronic experimental autoimmune encephalomyelitis in H-2b mice: fine specificity and T cell receptor Vβ expression of encephalitogenic T cells
  publication-title: Eur. J. Immunol.
– volume: 129
  start-page: 4365
  year: 2019
  end-page: 4376
  ident: bib76
  article-title: Potential role of iron in repair of inflammatory demyelinating lesions
  publication-title: J. Clin. Invest.
– volume: 15
  year: 2022
  ident: bib87
  article-title: Smouldering multiple sclerosis: the ‘real MS.’ Ther
  publication-title: Adv. Neurol. Diso
– year: 2020
  ident: bib97
  article-title: NS-Forest: A machine learning method for the objective identification of minimum marker gene combinations for cell type determination from single cell RNA sequencing
  publication-title: bioRxiv
– volume: 365
  start-page: 2188
  year: 2011
  end-page: 2197
  ident: bib41
  article-title: Inflammatory Cortical Demyelination in Early Multiple Sclerosis
  publication-title: New Engl. J. Med.
– volume: 25
  start-page: 1446
  year: 2022
  end-page: 1457
  ident: bib79
  article-title: CD8+ T cells induce interferon-responsive oligodendrocytes and microglia in white matter aging
  publication-title: Nat. Neurosci.
– volume: 135
  start-page: 511
  year: 2018
  end-page: 528
  ident: bib69
  article-title: Progressive multiple sclerosis patients show substantial lesion activity that correlates with clinical disease severity and sex: a retrospective autopsy cohort analysis
  publication-title: Acta Neuropathol.
– volume: 7
  year: 2016
  ident: bib64
  article-title: G protein-coupled receptor 37 is a negative regulator of oligodendrocyte differentiation and myelination
  publication-title: Nat. Commun.
– volume: 17
  start-page: 101
  year: 2019
  end-page: 106
  ident: bib35
  article-title: Probabilistic cell typing enables fine mapping of closely related cell types in situ
  publication-title: Nat. Methods
– volume: 20
  start-page: 218
  year: 2023
  end-page: 228
  ident: bib57
  article-title: Screening cell–cell communication in spatial transcriptomics via collective optimal transport
  publication-title: Nat. Methods
– volume: 184
  start-page: 37
  year: 2007
  end-page: 44
  ident: bib4
  article-title: Inflammation, demyelination, neurodegeneration and neuroprotection in the pathogenesis of multiple sclerosis
  publication-title: J. Neuroimmunol.
– volume: 18
  start-page: 1352
  year: 2021
  end-page: 1362
  ident: bib34
  article-title: Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram
  publication-title: Nat. Methods
– volume: 12
  year: 2021
  ident: bib114
  article-title: Inference and analysis of cell-cell communication using CellChat
  publication-title: Nat. Commun.
– volume: 110
  start-page: 9529
  year: 2013
  end-page: 9534
  ident: bib60
  article-title: GPR37 and GPR37L1 are receptors for the neuroprotective and glioprotective factors prosaptide and prosaposin
  publication-title: Proc. Natl. Acad. Sci. USA
– volume: 21
  start-page: 869
  year: 2018
  end-page: 880
  ident: bib102
  article-title: Neuronal atlas of the dorsal horn defines its architecture and links sensory input to transcriptional cell types
  publication-title: Nat. Neurosci.
– volume: 145
  start-page: 3147
  year: 2022
  end-page: 3161
  ident: bib86
  article-title: How patients with multiple sclerosis acquire disability
  publication-title: Brain
– volume: 15
  start-page: 545
  year: 2015
  end-page: 558
  ident: bib5
  article-title: Immunopathology of multiple sclerosis
  publication-title: Nat. Rev. Immunol.
– volume: 10
  year: 2023
  ident: bib17
  article-title: Single-cell transcriptomics identifies brain endothelium inflammatory networks in experimental autoimmune encephalomyelitis
  publication-title: Neurol. Neuroimmunol. Neuroinflamm.
– volume: 46
  start-page: 504
  year: 2018
  end-page: 517.e7
  ident: bib106
  article-title: Transcriptional convergence of oligodendrocyte lineage progenitors during development
  publication-title: Dev. Cell
– volume: 9
  year: 2018
  ident: bib10
  article-title: Pathogenic mechanisms associated with different clinical courses of multiple sclerosis
  publication-title: Front. Immunol.
– volume: 126
  start-page: 2597
  year: 2016
  end-page: 2609
  ident: bib53
  article-title: Persistent 7-tesla phase rim predicts poor outcome in new multiple sclerosis patient lesions
  publication-title: J. Clin. Invest.
– year: 2021
  ident: bib99
  article-title: Stitching and registering highly multiplexed whole slide images of tissues and tumors using ASHLAR software
  publication-title: bioRxiv
– volume: 21
  start-page: 263
  year: 2011
  end-page: 278
  ident: bib50
  article-title: An animal model of cortical and callosal pathology in multiple sclerosis
  publication-title: Brain Pathol.
– volume: 352
  start-page: 1326
  year: 2016
  end-page: 1329
  ident: bib32
  article-title: Oligodendrocyte heterogeneity in the mouse juvenile and adult central nervous system
  publication-title: Science
– volume: 33
  start-page: 495
  year: 2015
  end-page: 502
  ident: bib38
  article-title: Spatial reconstruction of single-cell gene expression data
  publication-title: Nat. Biotechnol.
– volume: 220
  year: 2023
  ident: bib19
  article-title: Experimental encephalomyelitis at age 90, still relevant and elucidating how viruses trigger disease
  publication-title: J. Exp. Med.
– volume: 566
  start-page: 388
  year: 2019
  end-page: 392
  ident: bib16
  article-title: Spatial and temporal heterogeneity of mouse and human microglia at single-cell resolution
  publication-title: Nature
– volume: 566
  start-page: 543
  year: 2019
  end-page: 547
  ident: bib13
  article-title: Altered human oligodendrocyte heterogeneity in multiple sclerosis
  publication-title: Nature
– volume: 8
  year: 2013
  ident: bib74
  article-title: Global and 3D spatial assessment of neuroinflammation in rodent models of multiple sclerosis
  publication-title: PLoS One
– volume: 19
  start-page: 171
  year: 2022
  end-page: 178
  ident: bib91
  article-title: Squidpy: a scalable framework for spatial omics analysis
  publication-title: Nat. Methods
– volume: 3
  year: 2020
  ident: bib27
  article-title: Single-cell and spatial transcriptomics enables probabilistic inference of cell type topography
  publication-title: Commun. Biol.
– volume: 347
  start-page: 1138
  year: 2015
  end-page: 1142
  ident: bib108
  article-title: Brain structure. Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq
  publication-title: Science
– volume: 9
  year: 2019
  ident: bib101
  article-title: From Louvain to Leiden: guaranteeing well-connected communities
  publication-title: Sci. Rep.
– volume: 25
  start-page: 944
  year: 2022
  end-page: 955
  ident: bib25
  article-title: Identification of early neurodegenerative pathways in progressive multiple sclerosis
  publication-title: Nat. Neurosci.
– volume: 9
  year: 2023
  ident: bib93
  article-title: TissUUmaps 3: Improvements in interactive visualization, exploration, and quality assessment of large-scale spatial omics data
  publication-title: Heliyon
– year: 2022
  ident: bib26
  article-title: Spatial cell type mapping of multiple sclerosis lesions
  publication-title: bioRxiv
– volume: 24
  start-page: 312
  year: 2021
  end-page: 325
  ident: bib112
  article-title: Reactive astrocyte nomenclature, definitions, and future directions
  publication-title: Nat. Neurosci.
– volume: 20
  year: 2019
  ident: bib54
  article-title: PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells
  publication-title: Genome Biol.
– volume: 48
  year: 2020
  ident: bib29
  article-title: Hybridization-based in situ sequencing (HybISS) for spatially resolved transcriptomics in human and mouse brain tissue
  publication-title: Nucleic Acids Res.
– volume: 11
  year: 2021
  ident: bib109
  article-title: Schwann cell remyelination of the central nervous system: why does it happen and what are the benefits?
  publication-title: Open Biol.
– year: 2022
  ident: bib94
  article-title: Deconwolf Enables High-Performance Deconvolution of Widefield Fluorescence Microscopy Images
– volume: 142
  start-page: 633
  year: 2019
  end-page: 646
  ident: bib43
  article-title: Spatial distribution of multiple sclerosis lesions in the cervical spinal cord
  publication-title: Brain
– volume: 26
  start-page: 19
  year: 2005
  end-page: 25
  ident: bib73
  article-title: Experimental autoimmune encephalomyelitis in the rat spinal cord: lesion detection with high-resolution MR microscopy at 17.6 T
  publication-title: AJNR Am. J. Neuroradiol.
– volume: 613
  start-page: 120
  year: 2023
  end-page: 129
  ident: bib82
  article-title: Microglia regulate central nervous system myelin growth and integrity
  publication-title: Nature
– volume: 22
  start-page: 71
  year: 2021
  end-page: 88
  ident: bib56
  article-title: Deciphering cell–cell interactions and communication from gene expression
  publication-title: Nat. Rev. Genet.
– volume: 26
  start-page: 2
  year: 2000
  end-page: 10
  ident: bib8
  article-title: Staging of multiple sclerosis (MS) lesions: pathology of the time frame of MS
  publication-title: Neuropath. Appl. Neuro
– year: 2005
  ident: bib39
  article-title: Experimental Models of Multiple Sclerosis
– volume: 4
  start-page: 1116
  year: 2001
  end-page: 1122
  ident: bib62
  article-title: TNFα promotes proliferation of oligodendrocyte progenitors and remyelination
  publication-title: Nat. Neurosci.
– volume: 12
  year: 2022
  ident: bib30
  article-title: Direct RNA targeted in situ sequencing for transcriptomic profiling in tissue
  publication-title: Sci. Rep.
– volume: 573
  start-page: 75
  year: 2019
  end-page: 82
  ident: bib11
  article-title: Neuronal vulnerability and multilineage diversity in multiple sclerosis
  publication-title: Nature
– volume: 81
  start-page: 975
  year: 2021
  end-page: 984
  ident: bib61
  article-title: G protein-coupled receptor GPR37-like 1 regulates adult oligodendrocyte generation
  publication-title: Dev. Neurobiol.
– volume: 12
  year: 2021
  ident: bib51
  article-title: Pericyte-derived fibrotic scarring is conserved across diverse central nervous system lesions
  publication-title: Nat. Commun.
– volume: 19
  year: 2018
  ident: bib90
  article-title: SCANPY: large-scale single-cell gene expression data analysis
  publication-title: Genome Biol.
– volume: 139
  start-page: 365
  year: 2020
  end-page: 382
  ident: bib24
  article-title: The active contribution of OPCs to neuroinflammation is mediated by LRP1
  publication-title: Acta Neuropathol.
– volume: 86
  start-page: 981
  year: 1990
  end-page: 985
  ident: bib59
  article-title: Autoreactive T lymphocytes in multiple sclerosis determined by antigen-induced secretion of interferon-gamma
  publication-title: J. Clin. Invest.
– volume: 10
  start-page: 857
  year: 2013
  end-page: 860
  ident: bib28
  article-title: In situ sequencing for RNA analysis in preserved tissue and cells
  publication-title: Nat. Methods
– volume: 174
  start-page: 999
  year: 2018
  end-page: 1014.e22
  ident: bib33
  article-title: Molecular architecture of the mouse nervous system
  publication-title: Cell
– volume: 15
  start-page: 1090
  year: 2018
  end-page: 1097
  ident: bib95
  article-title: Content-aware image restoration: pushing the limits of fluorescence microscopy
  publication-title: Nat. Methods
– volume: 184
  start-page: 3573
  year: 2021
  end-page: 3587.e29
  ident: bib113
  article-title: Integrated analysis of multimodal single-cell data
  publication-title: Cell
– volume: 22
  start-page: 1289
  year: 2016
  end-page: 1296
  ident: bib84
  article-title: Imaging central veins in brain lesions with 3-T T2
  publication-title: Mult. Scler.
– volume: 248
  start-page: 205
  year: 2012
  end-page: 215
  ident: bib78
  article-title: Mechanisms regulating regional localization of inflammation during CNS autoimmunity
  publication-title: Immunol. Rev.
– volume: 29
  start-page: 19
  year: 2018
  end-page: 24
  ident: bib89
  article-title: Multiple pathological mechanisms contribute to hippocampal damage in the experimental autoimmune encephalomyelitis model of multiple sclerosis
  publication-title: NeuroReport
– volume: 11
  year: 2022
  ident: bib18
  article-title: Single-cell transcriptomics reveals functionally specialized vascular endothelium in brain
  publication-title: eLife
– volume: 24
  start-page: 397
  year: 2023
  end-page: 415
  ident: bib110
  article-title: Roles and regulation of microglia activity in multiple sclerosis: insights from animal models
  publication-title: Nat. Rev. Neurosci.
– volume: 13
  start-page: 25
  year: 2017
  end-page: 36
  ident: bib1
  article-title: Interactions between genetic, lifestyle and environmental risk factors for multiple sclerosis
  publication-title: Nat. Rev. Neurol.
– volume: 111
  start-page: 1748
  year: 2023
  end-page: 1759.e8
  ident: bib68
  article-title: Remyelination by surviving oligodendrocytes is inefficient in the inflamed mammalian cortex
  publication-title: Neuron
– volume: 144
  start-page: 987
  year: 2022
  end-page: 1003
  ident: bib12
  article-title: Cross-regional homeostatic and reactive glial signatures in multiple sclerosis
  publication-title: Acta Neuropathol.
– volume: 8
  year: 2018
  ident: bib3
  article-title: Multiple sclerosis pathology
  publication-title: Cold Spring Harb. Perspect. Med.
– year: 2022
  ident: bib47
  article-title: Spatial Atlas of the Mouse Central Nervous System at Molecular Resolution
  publication-title: bioRxiv
– volume: 375
  start-page: 296
  year: 2022
  end-page: 301
  ident: bib2
  article-title: Longitudinal analysis reveals high prevalence of Epstein-Barr virus associated with multiple sclerosis
  publication-title: Science
– volume: 21
  start-page: 1198
  year: 2014
  end-page: 1208
  ident: bib63
  article-title: Tumor necrosis factor-α impairs oligodendroglial differentiation through a mitochondria-dependent process
  publication-title: Cell Death Differ.
– volume: 597
  start-page: 709
  year: 2021
  end-page: 714
  ident: bib15
  article-title: A lymphocyte–microglia–astrocyte axis in chronic active multiple sclerosis
  publication-title: Nature
– start-page: 265
  year: 2018
  end-page: 273
  ident: bib96
  article-title: Medical Image Computing and Computer Assisted Intervention – MICCAI 2018, 21st International Conference, Granada, Spain, September 16–20, 2018
  publication-title: Proceedings, Part II. Lect Notes Comput Sc
– volume: 40
  start-page: 661
  year: 2022
  end-page: 671
  ident: bib36
  article-title: Cell2location maps fine-grained cell types in spatial transcriptomics
  publication-title: Nat. Biotechnol.
– year: 2022
  ident: bib70
  article-title: Transcriptomic diversity of cell types across the adult human brain
  publication-title: bioRxiv
– volume: 120
  start-page: 7
  year: 2012
  end-page: 25
  ident: bib77
  article-title: Pathogenic implications of iron accumulation in multiple sclerosis
  publication-title: J. Neurochem.
– volume: 24
  start-page: 1837
  year: 2018
  end-page: 1844
  ident: bib14
  article-title: Disease-specific oligodendrocyte lineage cells arise in multiple sclerosis
  publication-title: Nat. Med.
– volume: 11
  year: 2020
  ident: bib71
  article-title: Distinct oligodendrocyte populations have spatial preference and different responses to spinal cord injury
  publication-title: Nat. Commun.
– volume: 22
  start-page: 2216
  year: 2018
  end-page: 2225
  ident: bib103
  article-title: Massively parallel single nucleus transcriptional profiling defines spinal cord neurons and their activity during behavior
  publication-title: Cell Rep.
– volume: 16
  start-page: 4177
  year: 2021
  end-page: 4200
  ident: bib37
  article-title: NovoSpaRc: flexible spatial reconstruction of single-cell gene expression with optimal transport
  publication-title: Nat. Protoc.
– volume: 8
  start-page: 681
  year: 1998
  end-page: 694
  ident: bib45
  article-title: Autoimmunity to myelin oligodendrocyte glycoprotein in rats mimics the spectrum of multiple sclerosis pathology
  publication-title: Brain Pathol.
– volume: 363
  year: 2019
  ident: bib21
  article-title: Single-cell profiling identifies myeloid cell subsets with distinct fates during neuroinflammation
  publication-title: Science
– volume: 19
  start-page: 305
  year: 2023
  end-page: 320
  ident: bib88
  article-title: Inflammation in multiple sclerosis: consequences for remyelination and disease progression
  publication-title: Nat. Rev. Neurol.
– year: 2019
  ident: bib98
  article-title: Multimodal cell type correspondence by intersectional mFISH in intact tissues
  publication-title: bioRxiv
– volume: 566
  start-page: 388
  year: 2019
  ident: 10.1016/j.cell.2024.02.030_bib16
  article-title: Spatial and temporal heterogeneity of mouse and human microglia at single-cell resolution
  publication-title: Nature
  doi: 10.1038/s41586-019-0924-x
– volume: 27
  start-page: 2013
  year: 2007
  ident: 10.1016/j.cell.2024.02.030_bib58
  article-title: Interferon-γ-oligodendrocyte interactions in the regulation of experimental autoimmune encephalomyelitis
  publication-title: J. Neurosci.
  doi: 10.1523/JNEUROSCI.4689-06.2007
– volume: 174
  start-page: 999
  year: 2018
  ident: 10.1016/j.cell.2024.02.030_bib33
  article-title: Molecular architecture of the mouse nervous system
  publication-title: Cell
  doi: 10.1016/j.cell.2018.06.021
– volume: 24
  start-page: 312
  year: 2021
  ident: 10.1016/j.cell.2024.02.030_bib112
  article-title: Reactive astrocyte nomenclature, definitions, and future directions
  publication-title: Nat. Neurosci.
  doi: 10.1038/s41593-020-00783-4
– year: 2019
  ident: 10.1016/j.cell.2024.02.030_bib98
  article-title: Multimodal cell type correspondence by intersectional mFISH in intact tissues
  publication-title: bioRxiv
– volume: 40
  start-page: 661
  year: 2022
  ident: 10.1016/j.cell.2024.02.030_bib36
  article-title: Cell2location maps fine-grained cell types in spatial transcriptomics
  publication-title: Nat. Biotechnol.
  doi: 10.1038/s41587-021-01139-4
– volume: 20
  year: 2022
  ident: 10.1016/j.cell.2024.02.030_bib72
  article-title: Spatial and temporal heterogeneity in the lineage progression of fine oligodendrocyte subtypes
  publication-title: BMC Biol.
  doi: 10.1186/s12915-022-01325-z
– volume: 48
  year: 2020
  ident: 10.1016/j.cell.2024.02.030_bib29
  article-title: Hybridization-based in situ sequencing (HybISS) for spatially resolved transcriptomics in human and mouse brain tissue
  publication-title: Nucleic Acids Res.
  doi: 10.1093/nar/gkaa792
– volume: 144
  start-page: 987
  year: 2022
  ident: 10.1016/j.cell.2024.02.030_bib12
  article-title: Cross-regional homeostatic and reactive glial signatures in multiple sclerosis
  publication-title: Acta Neuropathol.
  doi: 10.1007/s00401-022-02497-2
– volume: 22
  start-page: 2216
  year: 2018
  ident: 10.1016/j.cell.2024.02.030_bib103
  article-title: Massively parallel single nucleus transcriptional profiling defines spinal cord neurons and their activity during behavior
  publication-title: Cell Rep.
  doi: 10.1016/j.celrep.2018.02.003
– volume: 184
  start-page: 3573
  year: 2021
  ident: 10.1016/j.cell.2024.02.030_bib113
  article-title: Integrated analysis of multimodal single-cell data
  publication-title: Cell
  doi: 10.1016/j.cell.2021.04.048
– volume: 613
  start-page: 120
  year: 2023
  ident: 10.1016/j.cell.2024.02.030_bib82
  article-title: Microglia regulate central nervous system myelin growth and integrity
  publication-title: Nature
  doi: 10.1038/s41586-022-05534-y
– volume: 70
  start-page: 2076
  year: 2008
  ident: 10.1016/j.cell.2024.02.030_bib83
  article-title: Demonstrating the perivascular distribution of MS lesions in vivo with 7-tesla MRI
  publication-title: Neurology
  doi: 10.1212/01.wnl.0000313377.49555.2e
– volume: 67
  start-page: 2166
  year: 2019
  ident: 10.1016/j.cell.2024.02.030_bib107
  article-title: Characterization of a long noncoding RNA Pcdh17it as a novel marker for immature premyelinating oligodendrocytes
  publication-title: Glia
  doi: 10.1002/glia.23684
– volume: 566
  start-page: 543
  year: 2019
  ident: 10.1016/j.cell.2024.02.030_bib13
  article-title: Altered human oligodendrocyte heterogeneity in multiple sclerosis
  publication-title: Nature
  doi: 10.1038/s41586-019-0903-2
– volume: 10
  year: 2023
  ident: 10.1016/j.cell.2024.02.030_bib17
  article-title: Single-cell transcriptomics identifies brain endothelium inflammatory networks in experimental autoimmune encephalomyelitis
  publication-title: Neurol. Neuroimmunol. Neuroinflamm.
  doi: 10.1212/NXI.0000000000200046
– volume: 9
  year: 2023
  ident: 10.1016/j.cell.2024.02.030_bib93
  article-title: TissUUmaps 3: Improvements in interactive visualization, exploration, and quality assessment of large-scale spatial omics data
  publication-title: Heliyon
  doi: 10.1016/j.heliyon.2023.e15306
– volume: 25
  start-page: 944
  year: 2022
  ident: 10.1016/j.cell.2024.02.030_bib25
  article-title: Identification of early neurodegenerative pathways in progressive multiple sclerosis
  publication-title: Nat. Neurosci.
  doi: 10.1038/s41593-022-01097-3
– volume: 33
  start-page: 495
  year: 2015
  ident: 10.1016/j.cell.2024.02.030_bib38
  article-title: Spatial reconstruction of single-cell gene expression data
  publication-title: Nat. Biotechnol.
  doi: 10.1038/nbt.3192
– volume: 9
  year: 2018
  ident: 10.1016/j.cell.2024.02.030_bib10
  article-title: Pathogenic mechanisms associated with different clinical courses of multiple sclerosis
  publication-title: Front. Immunol.
– volume: 120
  start-page: 7
  year: 2012
  ident: 10.1016/j.cell.2024.02.030_bib77
  article-title: Pathogenic implications of iron accumulation in multiple sclerosis
  publication-title: J. Neurochem.
  doi: 10.1111/j.1471-4159.2011.07536.x
– volume: 20
  year: 2019
  ident: 10.1016/j.cell.2024.02.030_bib54
  article-title: PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells
  publication-title: Genome Biol.
  doi: 10.1186/s13059-019-1663-x
– volume: 248
  start-page: 205
  year: 2012
  ident: 10.1016/j.cell.2024.02.030_bib78
  article-title: Mechanisms regulating regional localization of inflammation during CNS autoimmunity
  publication-title: Immunol. Rev.
  doi: 10.1111/j.1600-065X.2012.01126.x
– volume: 11
  year: 2020
  ident: 10.1016/j.cell.2024.02.030_bib71
  article-title: Distinct oligodendrocyte populations have spatial preference and different responses to spinal cord injury
  publication-title: Nat. Commun.
  doi: 10.1038/s41467-020-19453-x
– volume: 12
  year: 2021
  ident: 10.1016/j.cell.2024.02.030_bib104
  article-title: A harmonized atlas of mouse spinal cord cell types and their spatial organization
  publication-title: Nat. Commun.
  doi: 10.1038/s41467-021-25125-1
– volume: 220
  year: 2023
  ident: 10.1016/j.cell.2024.02.030_bib19
  article-title: Experimental encephalomyelitis at age 90, still relevant and elucidating how viruses trigger disease
  publication-title: J. Exp. Med.
  doi: 10.1084/jem.20221322
– volume: 23
  start-page: 819
  year: 2020
  ident: 10.1016/j.cell.2024.02.030_bib67
  article-title: Motor learning promotes remyelination via new and surviving oligodendrocytes
  publication-title: Nat. Neurosci.
  doi: 10.1038/s41593-020-0637-3
– volume: 15
  start-page: 1090
  year: 2018
  ident: 10.1016/j.cell.2024.02.030_bib95
  article-title: Content-aware image restoration: pushing the limits of fluorescence microscopy
  publication-title: Nat. Methods
  doi: 10.1038/s41592-018-0216-7
– volume: 40
  year: 2022
  ident: 10.1016/j.cell.2024.02.030_bib20
  article-title: Disease-associated oligodendrocyte responses across neurodegenerative diseases
  publication-title: Cell Rep.
  doi: 10.1016/j.celrep.2022.111189
– volume: 129
  start-page: 4365
  year: 2019
  ident: 10.1016/j.cell.2024.02.030_bib76
  article-title: Potential role of iron in repair of inflammatory demyelinating lesions
  publication-title: J. Clin. Invest.
  doi: 10.1172/JCI126809
– volume: 70
  start-page: 764
  year: 2011
  ident: 10.1016/j.cell.2024.02.030_bib80
  article-title: Multiple sclerosis normal-appearing white matter: pathology–imaging correlations
  publication-title: Ann. Neurol.
  doi: 10.1002/ana.22521
– volume: 21
  start-page: 263
  year: 2011
  ident: 10.1016/j.cell.2024.02.030_bib50
  article-title: An animal model of cortical and callosal pathology in multiple sclerosis
  publication-title: Brain Pathol.
  doi: 10.1111/j.1750-3639.2010.00444.x
– year: 2022
  ident: 10.1016/j.cell.2024.02.030_bib49
  article-title: Harmonized single-cell landscape, intercellular crosstalk and tumor architecture of glioblastoma
  publication-title: bioRxiv
– volume: 19
  start-page: 171
  year: 2022
  ident: 10.1016/j.cell.2024.02.030_bib91
  article-title: Squidpy: a scalable framework for spatial omics analysis
  publication-title: Nat. Methods
  doi: 10.1038/s41592-021-01358-2
– year: 2022
  ident: 10.1016/j.cell.2024.02.030_bib94
– year: 2022
  ident: 10.1016/j.cell.2024.02.030_bib26
  article-title: Spatial cell type mapping of multiple sclerosis lesions
  publication-title: bioRxiv
– volume: 21
  start-page: 869
  year: 2018
  ident: 10.1016/j.cell.2024.02.030_bib102
  article-title: Neuronal atlas of the dorsal horn defines its architecture and links sensory input to transcriptional cell types
  publication-title: Nat. Neurosci.
  doi: 10.1038/s41593-018-0141-1
– volume: 83
  start-page: 278
  year: 2014
  ident: 10.1016/j.cell.2024.02.030_bib6
  article-title: Defining the clinical course of multiple sclerosis: the 2013 revisions
  publication-title: Neurology
  doi: 10.1212/WNL.0000000000000560
– volume: 21
  start-page: 1198
  year: 2014
  ident: 10.1016/j.cell.2024.02.030_bib63
  article-title: Tumor necrosis factor-α impairs oligodendroglial differentiation through a mitochondria-dependent process
  publication-title: Cell Death Differ.
  doi: 10.1038/cdd.2014.35
– volume: 11
  year: 2022
  ident: 10.1016/j.cell.2024.02.030_bib18
  article-title: Single-cell transcriptomics reveals functionally specialized vascular endothelium in brain
  publication-title: eLife
  doi: 10.7554/eLife.57520
– volume: 375
  start-page: 296
  year: 2022
  ident: 10.1016/j.cell.2024.02.030_bib2
  article-title: Longitudinal analysis reveals high prevalence of Epstein-Barr virus associated with multiple sclerosis
  publication-title: Science
  doi: 10.1126/science.abj8222
– volume: 573
  start-page: 75
  year: 2019
  ident: 10.1016/j.cell.2024.02.030_bib11
  article-title: Neuronal vulnerability and multilineage diversity in multiple sclerosis
  publication-title: Nature
  doi: 10.1038/s41586-019-1404-z
– volume: 578
  start-page: 593
  year: 2020
  ident: 10.1016/j.cell.2024.02.030_bib22
  article-title: MAFG-driven astrocytes promote CNS inflammation
  publication-title: Nature
  doi: 10.1038/s41586-020-1999-0
– volume: 3
  year: 2020
  ident: 10.1016/j.cell.2024.02.030_bib27
  article-title: Single-cell and spatial transcriptomics enables probabilistic inference of cell type topography
  publication-title: Commun. Biol.
  doi: 10.1038/s42003-020-01247-y
– volume: 12
  year: 2021
  ident: 10.1016/j.cell.2024.02.030_bib46
  article-title: ClusterMap for multi-scale clustering analysis of spatial gene expression
  publication-title: Nat. Commun.
  doi: 10.1038/s41467-021-26044-x
– volume: 17
  start-page: 101
  year: 2019
  ident: 10.1016/j.cell.2024.02.030_bib35
  article-title: Probabilistic cell typing enables fine mapping of closely related cell types in situ
  publication-title: Nat. Methods
  doi: 10.1038/s41592-019-0631-4
– volume: 126
  start-page: 2597
  year: 2016
  ident: 10.1016/j.cell.2024.02.030_bib53
  article-title: Persistent 7-tesla phase rim predicts poor outcome in new multiple sclerosis patient lesions
  publication-title: J. Clin. Invest.
  doi: 10.1172/JCI86198
– volume: 139
  start-page: 365
  year: 2020
  ident: 10.1016/j.cell.2024.02.030_bib24
  article-title: The active contribution of OPCs to neuroinflammation is mediated by LRP1
  publication-title: Acta Neuropathol.
  doi: 10.1007/s00401-019-02073-1
– volume: 566
  start-page: 538
  year: 2019
  ident: 10.1016/j.cell.2024.02.030_bib65
  article-title: Dynamics of oligodendrocyte generation in multiple sclerosis
  publication-title: Nature
  doi: 10.1038/s41586-018-0842-3
– volume: 597
  start-page: 709
  year: 2021
  ident: 10.1016/j.cell.2024.02.030_bib15
  article-title: A lymphocyte–microglia–astrocyte axis in chronic active multiple sclerosis
  publication-title: Nature
  doi: 10.1038/s41586-021-03892-7
– volume: 142
  start-page: 633
  year: 2019
  ident: 10.1016/j.cell.2024.02.030_bib43
  article-title: Spatial distribution of multiple sclerosis lesions in the cervical spinal cord
  publication-title: Brain
  doi: 10.1093/brain/awy352
– volume: 24
  start-page: 397
  year: 2023
  ident: 10.1016/j.cell.2024.02.030_bib110
  article-title: Roles and regulation of microglia activity in multiple sclerosis: insights from animal models
  publication-title: Nat. Rev. Neurosci.
  doi: 10.1038/s41583-023-00709-6
– year: 2005
  ident: 10.1016/j.cell.2024.02.030_bib39
– volume: 26
  start-page: 10967
  year: 2006
  ident: 10.1016/j.cell.2024.02.030_bib105
  article-title: Functional genomic analysis of oligodendrocyte differentiation
  publication-title: J. Neurosci.
  doi: 10.1523/JNEUROSCI.2572-06.2006
– volume: 15
  start-page: 545
  year: 2015
  ident: 10.1016/j.cell.2024.02.030_bib5
  article-title: Immunopathology of multiple sclerosis
  publication-title: Nat. Rev. Immunol.
  doi: 10.1038/nri3871
– volume: 19
  start-page: 305
  year: 2023
  ident: 10.1016/j.cell.2024.02.030_bib88
  article-title: Inflammation in multiple sclerosis: consequences for remyelination and disease progression
  publication-title: Nat. Rev. Neurol.
  doi: 10.1038/s41582-023-00801-6
– volume: 24
  start-page: 1837
  year: 2018
  ident: 10.1016/j.cell.2024.02.030_bib14
  article-title: Disease-specific oligodendrocyte lineage cells arise in multiple sclerosis
  publication-title: Nat. Med.
  doi: 10.1038/s41591-018-0236-y
– volume: 15
  year: 2022
  ident: 10.1016/j.cell.2024.02.030_bib87
  article-title: Smouldering multiple sclerosis: the ‘real MS.’ Ther
  publication-title: Adv. Neurol. Diso
– year: 2022
  ident: 10.1016/j.cell.2024.02.030_bib47
  article-title: Spatial Atlas of the Mouse Central Nervous System at Molecular Resolution
  publication-title: bioRxiv
– volume: 10
  start-page: 857
  year: 2013
  ident: 10.1016/j.cell.2024.02.030_bib28
  article-title: In situ sequencing for RNA analysis in preserved tissue and cells
  publication-title: Nat. Methods
  doi: 10.1038/nmeth.2563
– volume: 46
  start-page: 504
  year: 2018
  ident: 10.1016/j.cell.2024.02.030_bib106
  article-title: Transcriptional convergence of oligodendrocyte lineage progenitors during development
  publication-title: Dev. Cell
  doi: 10.1016/j.devcel.2018.07.005
– volume: 24
  start-page: 1173
  year: 2023
  ident: 10.1016/j.cell.2024.02.030_bib85
  article-title: Defining blood-induced microglia functions in neurodegeneration through multiomic profiling
  publication-title: Nat. Immunol.
  doi: 10.1038/s41590-023-01522-0
– volume: 12
  year: 2021
  ident: 10.1016/j.cell.2024.02.030_bib51
  article-title: Pericyte-derived fibrotic scarring is conserved across diverse central nervous system lesions
  publication-title: Nat. Commun.
  doi: 10.1038/s41467-021-25585-5
– volume: 25
  start-page: 1446
  year: 2022
  ident: 10.1016/j.cell.2024.02.030_bib79
  article-title: CD8+ T cells induce interferon-responsive oligodendrocytes and microglia in white matter aging
  publication-title: Nat. Neurosci.
  doi: 10.1038/s41593-022-01183-6
– volume: 135
  start-page: 511
  year: 2018
  ident: 10.1016/j.cell.2024.02.030_bib69
  article-title: Progressive multiple sclerosis patients show substantial lesion activity that correlates with clinical disease severity and sex: a retrospective autopsy cohort analysis
  publication-title: Acta Neuropathol.
  doi: 10.1007/s00401-018-1818-y
– volume: 12
  year: 2022
  ident: 10.1016/j.cell.2024.02.030_bib30
  article-title: Direct RNA targeted in situ sequencing for transcriptomic profiling in tissue
  publication-title: Sci. Rep.
– volume: 18
  start-page: 1352
  year: 2021
  ident: 10.1016/j.cell.2024.02.030_bib34
  article-title: Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram
  publication-title: Nat. Methods
  doi: 10.1038/s41592-021-01264-7
– volume: 26
  start-page: 19
  year: 2005
  ident: 10.1016/j.cell.2024.02.030_bib73
  article-title: Experimental autoimmune encephalomyelitis in the rat spinal cord: lesion detection with high-resolution MR microscopy at 17.6 T
  publication-title: AJNR Am. J. Neuroradiol.
– volume: 184
  start-page: 37
  year: 2007
  ident: 10.1016/j.cell.2024.02.030_bib4
  article-title: Inflammation, demyelination, neurodegeneration and neuroprotection in the pathogenesis of multiple sclerosis
  publication-title: J. Neuroimmunol.
  doi: 10.1016/j.jneuroim.2006.11.015
– volume: 8
  year: 2013
  ident: 10.1016/j.cell.2024.02.030_bib74
  article-title: Global and 3D spatial assessment of neuroinflammation in rodent models of multiple sclerosis
  publication-title: PLoS One
  doi: 10.1371/journal.pone.0076330
– volume: 145
  start-page: 3147
  year: 2022
  ident: 10.1016/j.cell.2024.02.030_bib86
  article-title: How patients with multiple sclerosis acquire disability
  publication-title: Brain
  doi: 10.1093/brain/awac016
– volume: 8
  start-page: 681
  year: 1998
  ident: 10.1016/j.cell.2024.02.030_bib45
  article-title: Autoimmunity to myelin oligodendrocyte glycoprotein in rats mimics the spectrum of multiple sclerosis pathology
  publication-title: Brain Pathol.
  doi: 10.1111/j.1750-3639.1998.tb00194.x
– volume: 19
  start-page: 1653
  year: 2022
  ident: 10.1016/j.cell.2024.02.030_bib48
  article-title: Unsupervised discovery of tissue architecture in multiplexed imaging
  publication-title: Nat. Methods
  doi: 10.1038/s41592-022-01657-2
– volume: 20
  start-page: 218
  year: 2023
  ident: 10.1016/j.cell.2024.02.030_bib57
  article-title: Screening cell–cell communication in spatial transcriptomics via collective optimal transport
  publication-title: Nat. Methods
  doi: 10.1038/s41592-022-01728-4
– volume: 4
  start-page: 1116
  year: 2001
  ident: 10.1016/j.cell.2024.02.030_bib62
  article-title: TNFα promotes proliferation of oligodendrocyte progenitors and remyelination
  publication-title: Nat. Neurosci.
  doi: 10.1038/nn738
– volume: 8
  year: 2018
  ident: 10.1016/j.cell.2024.02.030_bib3
  article-title: Multiple sclerosis pathology
  publication-title: Cold Spring Harb. Perspect. Med.
  doi: 10.1101/cshperspect.a028936
– volume: 14
  year: 2020
  ident: 10.1016/j.cell.2024.02.030_bib111
  article-title: Overview of general and discriminating markers of differential microglia phenotypes
  publication-title: Front. Cell. Neurosci.
  doi: 10.3389/fncel.2020.00198
– volume: 26
  start-page: 2
  year: 2000
  ident: 10.1016/j.cell.2024.02.030_bib8
  article-title: Staging of multiple sclerosis (MS) lesions: pathology of the time frame of MS
  publication-title: Neuropath. Appl. Neuro
  doi: 10.1046/j.1365-2990.2000.00217.x
– volume: 19
  year: 2018
  ident: 10.1016/j.cell.2024.02.030_bib90
  article-title: SCANPY: large-scale single-cell gene expression data analysis
  publication-title: Genome Biol.
  doi: 10.1186/s13059-017-1382-0
– volume: 111
  start-page: 1748
  year: 2023
  ident: 10.1016/j.cell.2024.02.030_bib68
  article-title: Remyelination by surviving oligodendrocytes is inefficient in the inflamed mammalian cortex
  publication-title: Neuron
  doi: 10.1016/j.neuron.2023.03.031
– volume: 22
  start-page: 71
  year: 2021
  ident: 10.1016/j.cell.2024.02.030_bib56
  article-title: Deciphering cell–cell interactions and communication from gene expression
  publication-title: Nat. Rev. Genet.
  doi: 10.1038/s41576-020-00292-x
– volume: 10
  year: 2022
  ident: 10.1016/j.cell.2024.02.030_bib81
  article-title: Brain macrophages acquire distinct transcriptomes in multiple sclerosis lesions and normal appearing white matter
  publication-title: Acta Neuropathol. Commun.
  doi: 10.1186/s40478-021-01306-3
– year: 2021
  ident: 10.1016/j.cell.2024.02.030_bib100
  article-title: anndata: Annotated data
  publication-title: bioRxiv
– volume: 7
  year: 2016
  ident: 10.1016/j.cell.2024.02.030_bib64
  article-title: G protein-coupled receptor 37 is a negative regulator of oligodendrocyte differentiation and myelination
  publication-title: Nat. Commun.
– volume: 9
  year: 2019
  ident: 10.1016/j.cell.2024.02.030_bib40
  article-title: Central nervous system targeted autoimmunity causes regional atrophy: a 9.4T MRI study of the EAE mouse model of Multiple Sclerosis
  publication-title: Sci. Rep.
  doi: 10.1038/s41598-019-44682-6
– volume: 29
  start-page: 19
  year: 2018
  ident: 10.1016/j.cell.2024.02.030_bib89
  article-title: Multiple pathological mechanisms contribute to hippocampal damage in the experimental autoimmune encephalomyelitis model of multiple sclerosis
  publication-title: NeuroReport
  doi: 10.1097/WNR.0000000000000920
– volume: 25
  start-page: 415
  year: 2022
  ident: 10.1016/j.cell.2024.02.030_bib66
  article-title: New oligodendrocytes exhibit more abundant and accurate myelin regeneration than those that survive demyelination
  publication-title: Nat. Neurosci.
  doi: 10.1038/s41593-021-01009-x
– volume: 352
  start-page: 1326
  year: 2016
  ident: 10.1016/j.cell.2024.02.030_bib32
  article-title: Oligodendrocyte heterogeneity in the mouse juvenile and adult central nervous system
  publication-title: Science
  doi: 10.1126/science.aaf6463
– volume: 12
  year: 2015
  ident: 10.1016/j.cell.2024.02.030_bib55
  article-title: Granzyme B-inhibitor serpina3n induces neuroprotection in vitro and in vivo
  publication-title: J. Neuroinflammation
  doi: 10.1186/s12974-015-0376-7
– volume: 81
  start-page: 975
  year: 2021
  ident: 10.1016/j.cell.2024.02.030_bib61
  article-title: G protein-coupled receptor GPR37-like 1 regulates adult oligodendrocyte generation
  publication-title: Dev. Neurobiol.
  doi: 10.1002/dneu.22854
– year: 2022
  ident: 10.1016/j.cell.2024.02.030_bib70
  article-title: Transcriptomic diversity of cell types across the adult human brain
  publication-title: bioRxiv
– volume: 365
  start-page: 2188
  year: 2011
  ident: 10.1016/j.cell.2024.02.030_bib41
  article-title: Inflammatory Cortical Demyelination in Early Multiple Sclerosis
  publication-title: New Engl. J. Med.
  doi: 10.1056/NEJMoa1100648
– volume: 363
  year: 2019
  ident: 10.1016/j.cell.2024.02.030_bib21
  article-title: Single-cell profiling identifies myeloid cell subsets with distinct fates during neuroinflammation
  publication-title: Science
  doi: 10.1126/science.aat7554
– volume: 40
  start-page: 308
  year: 2022
  ident: 10.1016/j.cell.2024.02.030_bib92
  article-title: Spatial components of molecular tissue biology
  publication-title: Nat. Biotechnol.
  doi: 10.1038/s41587-021-01182-1
– volume: 10
  year: 2019
  ident: 10.1016/j.cell.2024.02.030_bib23
  article-title: Oligodendrocyte precursor cells present antigen and are cytotoxic targets in inflammatory demyelination
  publication-title: Nat. Commun.
  doi: 10.1038/s41467-019-11638-3
– volume: 502
  start-page: 236
  year: 2007
  ident: 10.1016/j.cell.2024.02.030_bib75
  article-title: Time course and distribution of inflammatory and neurodegenerative events suggest structural bases for the pathogenesis of experimental autoimmune encephalomyelitis
  publication-title: J. Comp. Neurol.
  doi: 10.1002/cne.21307
– volume: 116
  start-page: 14290
  year: 2019
  ident: 10.1016/j.cell.2024.02.030_bib44
  article-title: Tracking the evolution of CNS remyelinating lesion in mice with neutral red dye
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.1819343116
– volume: 12
  year: 2021
  ident: 10.1016/j.cell.2024.02.030_bib114
  article-title: Inference and analysis of cell-cell communication using CellChat
  publication-title: Nat. Commun.
  doi: 10.1038/s41467-021-21246-9
– volume: 142
  start-page: 1858
  year: 2019
  ident: 10.1016/j.cell.2024.02.030_bib42
  article-title: Assessment of lesions on magnetic resonance imaging in multiple sclerosis: practical guidelines
  publication-title: Brain
  doi: 10.1093/brain/awz144
– volume: 187
  start-page: 1090
  year: 1916
  ident: 10.1016/j.cell.2024.02.030_bib52
  article-title: The histology of disseminated sclerosis
  publication-title: Lancet
  doi: 10.1016/S0140-6736(01)14668-4
– volume: 13
  start-page: 25
  year: 2017
  ident: 10.1016/j.cell.2024.02.030_bib1
  article-title: Interactions between genetic, lifestyle and environmental risk factors for multiple sclerosis
  publication-title: Nat. Rev. Neurol.
  doi: 10.1038/nrneurol.2016.187
– volume: 9
  year: 2019
  ident: 10.1016/j.cell.2024.02.030_bib101
  article-title: From Louvain to Leiden: guaranteeing well-connected communities
  publication-title: Sci. Rep.
  doi: 10.1038/s41598-019-41695-z
– volume: 86
  start-page: 981
  year: 1990
  ident: 10.1016/j.cell.2024.02.030_bib59
  article-title: Autoreactive T lymphocytes in multiple sclerosis determined by antigen-induced secretion of interferon-gamma
  publication-title: J. Clin. Invest.
  doi: 10.1172/JCI114800
– year: 2021
  ident: 10.1016/j.cell.2024.02.030_bib99
  article-title: Stitching and registering highly multiplexed whole slide images of tissues and tumors using ASHLAR software
  publication-title: bioRxiv
– volume: 119
  start-page: 709
  year: 1996
  ident: 10.1016/j.cell.2024.02.030_bib7
  article-title: Spinal MRI in patients with suspected multiple sclerosis and negative brain MRI
  publication-title: Brain
  doi: 10.1093/brain/119.3.709
– volume: 133
  start-page: 13
  year: 2017
  ident: 10.1016/j.cell.2024.02.030_bib9
  article-title: An updated histological classification system for multiple sclerosis lesions
  publication-title: Acta Neuropathol.
  doi: 10.1007/s00401-016-1653-y
– volume: 347
  start-page: 1138
  year: 2015
  ident: 10.1016/j.cell.2024.02.030_bib108
  article-title: Brain structure. Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq
  publication-title: Science
  doi: 10.1126/science.aaa1934
– volume: 22
  start-page: 1289
  year: 2016
  ident: 10.1016/j.cell.2024.02.030_bib84
  article-title: Imaging central veins in brain lesions with 3-T T2∗-weighted magnetic resonance imaging differentiates multiple sclerosis from microangiopathic brain lesions
  publication-title: Mult. Scler.
  doi: 10.1177/1352458515616700
– volume: 110
  start-page: 9529
  year: 2013
  ident: 10.1016/j.cell.2024.02.030_bib60
  article-title: GPR37 and GPR37L1 are receptors for the neuroprotective and glioprotective factors prosaptide and prosaposin
  publication-title: Proc. Natl. Acad. Sci. USA
  doi: 10.1073/pnas.1219004110
– volume: 16
  start-page: 4177
  year: 2021
  ident: 10.1016/j.cell.2024.02.030_bib37
  article-title: NovoSpaRc: flexible spatial reconstruction of single-cell gene expression with optimal transport
  publication-title: Nat. Protoc.
  doi: 10.1038/s41596-021-00573-7
– year: 2020
  ident: 10.1016/j.cell.2024.02.030_bib97
  article-title: NS-Forest: A machine learning method for the objective identification of minimum marker gene combinations for cell type determination from single cell RNA sequencing
  publication-title: bioRxiv
– volume: 25
  start-page: 1951
  year: 1995
  ident: 10.1016/j.cell.2024.02.030_bib31
  article-title: A myelin oligodendrocyte glycoprotein peptide induces typical chronic experimental autoimmune encephalomyelitis in H-2b mice: fine specificity and T cell receptor Vβ expression of encephalitogenic T cells
  publication-title: Eur. J. Immunol.
  doi: 10.1002/eji.1830250723
– start-page: 265
  year: 2018
  ident: 10.1016/j.cell.2024.02.030_bib96
  article-title: Medical Image Computing and Computer Assisted Intervention – MICCAI 2018, 21st International Conference, Granada, Spain, September 16–20, 2018
  doi: 10.1007/978-3-030-00934-2_30
– volume: 11
  year: 2021
  ident: 10.1016/j.cell.2024.02.030_bib109
  article-title: Schwann cell remyelination of the central nervous system: why does it happen and what are the benefits?
  publication-title: Open Biol.
  doi: 10.1098/rsob.200352
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Snippet Multiple sclerosis (MS) is a neurological disease characterized by multifocal lesions and smoldering pathology. Although single-cell analyses provided insights...
Multiple sclerosis (MS) is a neurological disease characterized by multifocal lesions and smoldering pathology. Although single -cell analyses provided...
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SubjectTerms disease-associated glia
EAE
encephalomyelitis
experimental autoimmune
experimental autoimmune encephalomyelitis
in situ sequencing
multiple sclerosis
neuroinflammation
neuroinflammation disease-associated glia
neuropathology
SERPINA3
Serpina3n
single-cell
spatial sequencing
Title Cellular architecture of evolving neuroinflammatory lesions and multiple sclerosis pathology
URI https://dx.doi.org/10.1016/j.cell.2024.02.030
https://www.ncbi.nlm.nih.gov/pubmed/38513664
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