Ancient mtDNA from the extinct Indian cheetah supports unexpectedly deep divergence from African cheetahs
The Indian cheetah was hunted to extinction by the mid-20th century. While analysis of 139 bp of mitochondrial DNA (mtDNA) has confirmed that the Indian cheetah was part of the Asiatic subspecies ( Acinonyx jubatus venaticus ), the detailed relationships between cheetah populations remains unclear d...
Saved in:
| Published in | Scientific reports Vol. 10; no. 1; p. 4618 |
|---|---|
| Main Authors | , , , , , , , , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
London
Nature Publishing Group UK
12.03.2020
Nature Publishing Group |
| Subjects | |
| Online Access | Get full text |
Cover
Loading…
| Abstract | The Indian cheetah was hunted to extinction by the mid-20th century. While analysis of 139 bp of mitochondrial DNA (mtDNA) has confirmed that the Indian cheetah was part of the Asiatic subspecies (
Acinonyx jubatus venaticus
), the detailed relationships between cheetah populations remains unclear due to limited genetic data. We clarify these relationships by studying larger fragments of cheetah mtDNA, both from an Indian cheetah museum specimen and two African cheetah, one modern and one historic, imported into India at different times. Our results suggest that the most recent common ancestor of cheetah mtDNA is approximately twice as ancient as currently recognised. The Indian and Southeast African (
Acinonyx jubatus jubatus
) cheetah mtDNA diverged approximately 72 kya, while the Southeast and Northeast African (
Acinonyx jubatus soemmeringii)
cheetah mtDNA diverged around 139 kya. Additionally, the historic African cheetah sampled from India proved to have an
A. j. jubatus
haplotype, suggesting a hitherto unrecognised South African route of cheetah importation into India in the 19
th
century. Together, our results provide a deeper understanding of the relationships between cheetah subspecies, and have important implications for the conservation of
A. j. venaticus
and potential reintroduction of cheetahs into India. |
|---|---|
| AbstractList | The Indian cheetah was hunted to extinction by the mid-20th century. While analysis of 139 bp of mitochondrial DNA (mtDNA) has confirmed that the Indian cheetah was part of the Asiatic subspecies (
Acinonyx jubatus venaticus
), the detailed relationships between cheetah populations remains unclear due to limited genetic data. We clarify these relationships by studying larger fragments of cheetah mtDNA, both from an Indian cheetah museum specimen and two African cheetah, one modern and one historic, imported into India at different times. Our results suggest that the most recent common ancestor of cheetah mtDNA is approximately twice as ancient as currently recognised. The Indian and Southeast African (
Acinonyx jubatus jubatus
) cheetah mtDNA diverged approximately 72 kya, while the Southeast and Northeast African (
Acinonyx jubatus soemmeringii)
cheetah mtDNA diverged around 139 kya. Additionally, the historic African cheetah sampled from India proved to have an
A. j. jubatus
haplotype, suggesting a hitherto unrecognised South African route of cheetah importation into India in the 19
th
century. Together, our results provide a deeper understanding of the relationships between cheetah subspecies, and have important implications for the conservation of
A. j. venaticus
and potential reintroduction of cheetahs into India. The Indian cheetah was hunted to extinction by the mid-20th century. While analysis of 139 bp of mitochondrial DNA (mtDNA) has confirmed that the Indian cheetah was part of the Asiatic subspecies (Acinonyx jubatus venaticus), the detailed relationships between cheetah populations remains unclear due to limited genetic data. We clarify these relationships by studying larger fragments of cheetah mtDNA, both from an Indian cheetah museum specimen and two African cheetah, one modern and one historic, imported into India at different times. Our results suggest that the most recent common ancestor of cheetah mtDNA is approximately twice as ancient as currently recognised. The Indian and Southeast African (Acinonyx jubatus jubatus) cheetah mtDNA diverged approximately 72 kya, while the Southeast and Northeast African (Acinonyx jubatus soemmeringii) cheetah mtDNA diverged around 139 kya. Additionally, the historic African cheetah sampled from India proved to have an A. j. jubatus haplotype, suggesting a hitherto unrecognised South African route of cheetah importation into India in the 19th century. Together, our results provide a deeper understanding of the relationships between cheetah subspecies, and have important implications for the conservation of A. j. venaticus and potential reintroduction of cheetahs into India. Abstract The Indian cheetah was hunted to extinction by the mid-20th century. While analysis of 139 bp of mitochondrial DNA (mtDNA) has confirmed that the Indian cheetah was part of the Asiatic subspecies ( Acinonyx jubatus venaticus ), the detailed relationships between cheetah populations remains unclear due to limited genetic data. We clarify these relationships by studying larger fragments of cheetah mtDNA, both from an Indian cheetah museum specimen and two African cheetah, one modern and one historic, imported into India at different times. Our results suggest that the most recent common ancestor of cheetah mtDNA is approximately twice as ancient as currently recognised. The Indian and Southeast African ( Acinonyx jubatus jubatus ) cheetah mtDNA diverged approximately 72 kya, while the Southeast and Northeast African ( Acinonyx jubatus soemmeringii) cheetah mtDNA diverged around 139 kya. Additionally, the historic African cheetah sampled from India proved to have an A. j. jubatus haplotype, suggesting a hitherto unrecognised South African route of cheetah importation into India in the 19 th century. Together, our results provide a deeper understanding of the relationships between cheetah subspecies, and have important implications for the conservation of A. j. venaticus and potential reintroduction of cheetahs into India. The Indian cheetah was hunted to extinction by the mid-20th century. While analysis of 139 bp of mitochondrial DNA (mtDNA) has confirmed that the Indian cheetah was part of the Asiatic subspecies (Acinonyx jubatus venaticus), the detailed relationships between cheetah populations remains unclear due to limited genetic data. We clarify these relationships by studying larger fragments of cheetah mtDNA, both from an Indian cheetah museum specimen and two African cheetah, one modern and one historic, imported into India at different times. Our results suggest that the most recent common ancestor of cheetah mtDNA is approximately twice as ancient as currently recognised. The Indian and Southeast African (Acinonyx jubatus jubatus) cheetah mtDNA diverged approximately 72 kya, while the Southeast and Northeast African (Acinonyx jubatus soemmeringii) cheetah mtDNA diverged around 139 kya. Additionally, the historic African cheetah sampled from India proved to have an A. j. jubatus haplotype, suggesting a hitherto unrecognised South African route of cheetah importation into India in the 19 century. Together, our results provide a deeper understanding of the relationships between cheetah subspecies, and have important implications for the conservation of A. j. venaticus and potential reintroduction of cheetahs into India. |
| ArticleNumber | 4618 |
| Author | Verma, Sunil Kumar Singh, Lalji Rai, Niraj Golla, Tirupathi Rao Ara, Sreenivas Thakur, Mukesh Prakash, Satya Iliescu, Florin Mircea Chandra, Kailash Tabasum, Wajeeda Jacobs, Guy S. Thangaraj, Kumarasamy Gaur, Ajay |
| Author_xml | – sequence: 1 givenname: Niraj surname: Rai fullname: Rai, Niraj organization: Birbal Sahni Institute of Palaeosciences, CSIR Centre for Cellular and Molecular Biology – sequence: 2 givenname: Sunil Kumar surname: Verma fullname: Verma, Sunil Kumar organization: CSIR Centre for Cellular and Molecular Biology – sequence: 3 givenname: Ajay orcidid: 0000-0003-4964-3640 surname: Gaur fullname: Gaur, Ajay organization: CSIR Centre for Cellular and Molecular Biology – sequence: 4 givenname: Florin Mircea surname: Iliescu fullname: Iliescu, Florin Mircea organization: Department of Genetics, University of Cambridge – sequence: 5 givenname: Mukesh orcidid: 0000-0003-2609-7579 surname: Thakur fullname: Thakur, Mukesh organization: Zoological Survey of India – sequence: 6 givenname: Tirupathi Rao surname: Golla fullname: Golla, Tirupathi Rao organization: Ecological Genomics & Wildlife Conservation, Department of Zoology, University of Johannesburg – sequence: 7 givenname: Kailash surname: Chandra fullname: Chandra, Kailash organization: Zoological Survey of India – sequence: 8 givenname: Satya surname: Prakash fullname: Prakash, Satya organization: CSIR Centre for Cellular and Molecular Biology – sequence: 9 givenname: Wajeeda surname: Tabasum fullname: Tabasum, Wajeeda organization: CSIR Centre for Cellular and Molecular Biology – sequence: 10 givenname: Sreenivas surname: Ara fullname: Ara, Sreenivas organization: CSIR Centre for Cellular and Molecular Biology – sequence: 11 givenname: Lalji surname: Singh fullname: Singh, Lalji organization: CSIR Centre for Cellular and Molecular Biology – sequence: 12 givenname: Kumarasamy surname: Thangaraj fullname: Thangaraj, Kumarasamy email: thangs@ccmb.res.in organization: CSIR Centre for Cellular and Molecular Biology – sequence: 13 givenname: Guy S. surname: Jacobs fullname: Jacobs, Guy S. email: guysjacobs@ntu.edu.sg organization: Complexity Institute, Nanyang Technological University, Department of Archaeology, University of Cambridge |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/32165662$$D View this record in MEDLINE/PubMed |
| BookMark | eNp9kU9PHSEUxUljU636BVwYEjfdTMufGWA2Ji-2tiam3dQ1QbjzHmYGRmCMfvvOc6zaLmQDyf2dczk5H9FOiAEQOqLkMyVcfck1bVpVEUYqQWRDK_kO7TFSNxXjjO28eu-iw5xvyHwa1ta0_YB2OaOiEYLtIb8K1kMoeChff65wl-KAywYw3BcfbMEXwXkTsN0AFLPBeRrHmErGU4D7EWwB1z9gBzBi5-8grSFYWFxWXfL2RZoP0PvO9BkOn-59dHX-7ffZj-ry1_eLs9VlZRtKS9URY5SwRFpFO2kbp4QRQrYtJ44oZ4igqmutkLWj4KAFDhbgWnZQM7BC8X10uviO0_UAzs7hkun1mPxg0oOOxut_J8Fv9DreaUmEVIrNBp-eDFK8nSAXPfhsoe9NgDhlzbiUnLdMbtGT_9CbOKUwx9tSQlJCuZwptlA2xZwTdM-foURvy9RLmXouUz-Wqbei49cxniV_q5sBvgB5HoU1pJfdb9j-AYtAriE |
| CitedBy_id | crossref_primary_10_1007_s12038_022_00304_4 crossref_primary_10_1016_j_jasrep_2021_103216 crossref_primary_10_5334_aa_190 crossref_primary_10_17159_sajs_2023_15617 crossref_primary_10_52679_tabcj_2022_0006 |
| Cites_doi | 10.1093/jhered/esx047 10.1093/nar/gkf436 10.1016/j.cub.2005.07.052 10.1093/bioinformatics/btu170 10.1101/gr.107524.110 10.1126/science.1122277 10.2144/000112383 10.1016/j.gene.2004.05.020 10.1093/bib/bbs012 10.1093/nar/gkw256 10.1093/molbev/msm088 10.1093/bioinformatics/btp352 10.1093/jhered/esm062 10.1111/j.1365-294X.2010.04986.x 10.1016/B978-0-12-804088-1.00020-4 10.1093/nar/gks596 10.1101/gr.185702 10.1007/BF02109483 10.1007/s10531-017-1298-8 10.1038/nmeth.1923 10.1101/gr.186668.114 10.1186/s13059-015-0837-4 10.1371/journal.pcbi.1003537 10.1046/j.1365-2540.2001.00840.x 10.1093/molbev/msx126 |
| ContentType | Journal Article |
| Copyright | The Author(s) 2020 This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. |
| Copyright_xml | – notice: The Author(s) 2020 – notice: This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License. |
| DBID | C6C CGR CUY CVF ECM EIF NPM AAYXX CITATION 3V. 7X7 7XB 88A 88E 88I 8FE 8FH 8FI 8FJ 8FK ABUWG AFKRA AZQEC BBNVY BENPR BHPHI CCPQU DWQXO FYUFA GHDGH GNUQQ HCIFZ K9. LK8 M0S M1P M2P M7P PIMPY PQEST PQQKQ PQUKI PRINS Q9U 7X8 5PM |
| DOI | 10.1038/s41598-020-60751-7 |
| DatabaseName | SpringerOpen Medline MEDLINE MEDLINE (Ovid) MEDLINE MEDLINE PubMed CrossRef ProQuest Central (Corporate) Health & Medical Complete (ProQuest Database) ProQuest Central (purchase pre-March 2016) Biology Database (Alumni Edition) Medical Database (Alumni Edition) Science Database (Alumni Edition) ProQuest SciTech Collection ProQuest Natural Science Collection Hospital Premium Collection Hospital Premium Collection (Alumni Edition) ProQuest Central (Alumni) (purchase pre-March 2016) ProQuest Central (Alumni) ProQuest Central UK/Ireland ProQuest Central Essentials Biological Science Collection ProQuest Central ProQuest Natural Science Collection ProQuest One Community College ProQuest Central Health Research Premium Collection Health Research Premium Collection (Alumni) ProQuest Central Student SciTech Premium Collection ProQuest Health & Medical Complete (Alumni) Biological Sciences Health & Medical Collection (Alumni Edition) PML(ProQuest Medical Library) ProQuest Science Journals Biological Science Database Publicly Available Content Database ProQuest One Academic Eastern Edition (DO NOT USE) ProQuest One Academic ProQuest One Academic UKI Edition ProQuest Central China ProQuest Central Basic MEDLINE - Academic PubMed Central (Full Participant titles) |
| DatabaseTitle | MEDLINE Medline Complete MEDLINE with Full Text PubMed MEDLINE (Ovid) CrossRef Publicly Available Content Database ProQuest Central Student ProQuest Central Essentials ProQuest Health & Medical Complete (Alumni) ProQuest Central (Alumni Edition) SciTech Premium Collection ProQuest One Community College ProQuest Natural Science Collection ProQuest Central China ProQuest Biology Journals (Alumni Edition) ProQuest Central Health Research Premium Collection Health and Medicine Complete (Alumni Edition) Natural Science Collection ProQuest Central Korea Biological Science Collection ProQuest Medical Library (Alumni) ProQuest Science Journals (Alumni Edition) ProQuest Biological Science Collection ProQuest Central Basic ProQuest Science Journals ProQuest One Academic Eastern Edition ProQuest Hospital Collection Health Research Premium Collection (Alumni) Biological Science Database ProQuest SciTech Collection ProQuest Hospital Collection (Alumni) ProQuest Health & Medical Complete ProQuest Medical Library ProQuest One Academic UKI Edition ProQuest One Academic ProQuest Central (Alumni) MEDLINE - Academic |
| DatabaseTitleList | Publicly Available Content Database CrossRef MEDLINE |
| Database_xml | – sequence: 1 dbid: C6C name: SpringerOpen url: http://www.springeropen.com/ sourceTypes: Publisher – sequence: 2 dbid: NPM name: PubMed url: https://proxy.k.utb.cz/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed sourceTypes: Index Database – sequence: 3 dbid: EIF name: MEDLINE url: https://proxy.k.utb.cz/login?url=https://www.webofscience.com/wos/medline/basic-search sourceTypes: Index Database – sequence: 4 dbid: BENPR name: ProQuest Central url: https://www.proquest.com/central sourceTypes: Aggregation Database |
| DeliveryMethod | fulltext_linktorsrc |
| Discipline | Biology |
| EISSN | 2045-2322 |
| EndPage | 4618 |
| ExternalDocumentID | 10_1038_s41598_020_60751_7 32165662 |
| Genre | Research Support, Non-U.S. Gov't Journal Article |
| GeographicLocations | Africa India |
| GeographicLocations_xml | – name: Africa – name: India |
| GrantInformation_xml | – fundername: Nanyang Technological University (NTU) grantid: NTU Presidential Postdoctoral Fellowship funderid: https://doi.org/10.13039/501100001475 – fundername: ; grantid: NTU Presidential Postdoctoral Fellowship |
| GroupedDBID | 0R~ 3V. 4.4 53G 5VS 7X7 88A 88E 88I 8FE 8FH 8FI 8FJ AAFWJ AAJSJ AAKDD ABDBF ABUWG ACGFS ACSMW ADBBV ADRAZ AENEX AFKRA AJTQC ALIPV ALMA_UNASSIGNED_HOLDINGS AOIJS AZQEC BAWUL BBNVY BCNDV BENPR BHPHI BPHCQ BVXVI C6C CCPQU DIK DWQXO EBD EBLON EBS ESX FYUFA GNUQQ GROUPED_DOAJ GX1 HCIFZ HH5 HMCUK HYE KQ8 LK8 M0L M1P M2P M48 M7P M~E NAO OK1 PIMPY PQQKQ PROAC PSQYO RIG RNT RNTTT RPM SNYQT UKHRP CGR CUY CVF ECM EIF NPM AAYXX AFPKN CITATION 7XB 8FK K9. PQEST PQUKI PRINS Q9U 7X8 5PM |
| ID | FETCH-LOGICAL-c511t-f0aa86c07c81f7c5d86a6679930d08da0618f9c674d1ede9e3eceeb7fe42ec683 |
| IEDL.DBID | RPM |
| ISSN | 2045-2322 |
| IngestDate | Tue Sep 17 21:18:58 EDT 2024 Sat Oct 05 05:40:17 EDT 2024 Thu Oct 10 17:40:55 EDT 2024 Fri Aug 23 00:45:07 EDT 2024 Wed Oct 16 00:44:56 EDT 2024 Fri Oct 11 20:45:13 EDT 2024 |
| IsDoiOpenAccess | true |
| IsOpenAccess | true |
| IsPeerReviewed | true |
| IsScholarly | true |
| Issue | 1 |
| Language | English |
| License | Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
| LinkModel | DirectLink |
| MergedId | FETCHMERGED-LOGICAL-c511t-f0aa86c07c81f7c5d86a6679930d08da0618f9c674d1ede9e3eceeb7fe42ec683 |
| Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 |
| ORCID | 0000-0003-2609-7579 0000-0003-4964-3640 |
| OpenAccessLink | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7067882/ |
| PMID | 32165662 |
| PQID | 2376710137 |
| PQPubID | 2041939 |
| PageCount | 1 |
| ParticipantIDs | pubmedcentral_primary_oai_pubmedcentral_nih_gov_7067882 proquest_miscellaneous_2377339272 proquest_journals_2376710137 crossref_primary_10_1038_s41598_020_60751_7 pubmed_primary_32165662 springer_journals_10_1038_s41598_020_60751_7 |
| PublicationCentury | 2000 |
| PublicationDate | 2020-03-12 |
| PublicationDateYYYYMMDD | 2020-03-12 |
| PublicationDate_xml | – month: 03 year: 2020 text: 2020-03-12 day: 12 |
| PublicationDecade | 2020 |
| PublicationPlace | London |
| PublicationPlace_xml | – name: London – name: England |
| PublicationTitle | Scientific reports |
| PublicationTitleAbbrev | Sci Rep |
| PublicationTitleAlternate | Sci Rep |
| PublicationYear | 2020 |
| Publisher | Nature Publishing Group UK Nature Publishing Group |
| Publisher_xml | – name: Nature Publishing Group UK – name: Nature Publishing Group |
| References | YangZPAML 4: phylogenetic analysis by maximum likelihoodMolecular Biology and Evolution2007248158615911:CAS:528:DC%2BD2sXpsVGrs7c%3D10.1093/molbev/msm088 BurgerPAAnalysis of the mitochondrial genome of cheetahs (Acinonyx jubatus) with neurodegenerative diseaseGene200433811111191:CAS:528:DC%2BD2cXmtlOqs78%3D10.1016/j.gene.2004.05.020 Divyabhanusinh. The end of a trail: the cheetah in India. Banyan Books, New Delhi. (1995). RohlandNHofreiterMComparison and optimization of ancient DNA extractionBiotechniques20074233433521:CAS:528:DC%2BD2sXjtlGnsLg%3D10.2144/000112383 RangarajanMThe role of administration in extermination: fresh evidence on the cheetah (Acinonyx jubatus) in IndiaJournal of the Bombay Natural History Society199895328332 Rangarajan, M. India’s wildlife history: an introduction. (Orient Blackswan, 2005). LiGDavisBWEizirikEMurphyWJPhylogenomic evidence for ancient hybridization in the genomes of living cats (Felidae)Genome Research201626111110.1101/gr.186668.114 KishinoHMiyataTHasegawaMMaximum likelihood inference of protein phylogeny and the origin of chloroplastsJournal of Molecular Evolution19903121511601990JMolE..31..151K1:CAS:528:DyaK3cXlt1yqtLw%3D10.1007/BF02109483 O’BrienSJJohnsonWEDriscollCADobryninPMarkerLConservation genetics of the cheetah: lessons learned and new opportunitiesJournal of Heredity2017108667167710.1093/jhered/esx047 FarhadiniaMSThe critically endangered Asiatic cheetah Acinonyx jubatus venaticus in Iran: a review of recent distribution, and conservation statusBiodiversity and Conservation20172651027104610.1007/s10531-017-1298-8 AntunesAPontiusJRamosMJO’BrienSJJohnsonWEMitochondrial introgressions into the nuclear genome of the domestic catJournal of Heredity20079854144201:CAS:528:DC%2BD2sXhtVSgtrfL10.1093/jhered/esm062 AkhtarMEThe Cheetah and the MughalsIn Proceedings of the Indian History Congress199657381386 Nowell, K. & Jackson, P. Eds Wild cats: status survey and conservation action plan. 41–44 (IUCN Gland, 1996). MilneIUsing Tablet for visual exploration of second-generation sequencing dataBriefings in Bioinformatics201214219320210.1093/bib/bbs012 LiHThe sequence alignment/map format and SAMtoolsBioinformatics200925162078207910.1093/bioinformatics/btp352 BarnettREvolution of the extinct Sabretooths and the American cheetah-like catCurrent Biology20051515R589R5901:CAS:528:DC%2BD2MXntVOgsLk%3D10.1016/j.cub.2005.07.052 McKennaAThe Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing dataGenome Research2010209129713031:CAS:528:DC%2BC3cXhtFeru7jM10.1101/gr.107524.110 Divyabhanusinh. The origin, range and status of the Asiatic (or Indian) cheetah or hunting leopard (Acinonyx jubatus venaticus). In Proceeding of Cat Specialist Group Meeting, 183–185 (1984). OgilvieHABouckaertRRDrummondAJStarBEAST2 Brings Faster Species Tree Inference and Accurate Estimates of Substitution RatesMolecular Biology and Evolution20171;3482101211410.1093/molbev/msx126 TrifinopoulosJNguyenL-Tvon HaeselerAMinhBQW-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysisNucleic Acids Research201644W1W232W2351:CAS:528:DC%2BC2sXhtV2isbfN10.1093/nar/gkw256 BolgerAMLohseMUsadelBTrimmomatic: a flexible trimmer for Illumina sequence dataBioinformatics20143015211421201:CAS:528:DC%2BC2cXht1Sqt7nP10.1093/bioinformatics/btu170 Ranjitsinh, M. and Jhala, Y. Assessing the potential for reintroducing the cheetah in India. Wildlife Trust of India, Noida, & Wildlife Institute of India, Dehradun TR2010/001 (2010). CharruauPPhylogeography, genetic structure and population divergence time of cheetahs in Africa and Asia: evidence for long-term geographic isolatesMolecular Ecology20112047067241:STN:280:DC%2BC3M3ivVehtw%3D%3D10.1111/j.1365-294X.2010.04986.x DriscollCAMenotti-RaymondMNelsonGGoldsteinDO’BrienSJGenomic microsatellites as evolutionary chronometers: a test in wild catsGenome Research20021234144231:CAS:528:DC%2BD38XitFSltL0%3D10.1101/gr.185702 Shahabuddin, G. Reclaiming the grassland for the cheetah science and nature conservation in India. (CASI Working Paper Series, 2015). BouckaertRBEAST 2: A Software Platform for Bayesian Evolutionary AnalysisPLoS Computational Biology2014104e100353710.1371/journal.pcbi.1003537 FreemanARSequence variation in the mitochondrial DNA control region of wild African cheetahs (Acinonyx jubatus)Heredity20018633551:CAS:528:DC%2BD3MXmtlSgur0%3D10.1046/j.1365-2540.2001.00840.x DobryninPGenomic legacy of the African cheetah, Acinonyx jubatusGenome Biology201516110.1186/s13059-015-0837-4 LangmeadBSalzbergSLFast gapped-read alignment with Bowtie 2Nature Methods2012943571:CAS:528:DC%2BC38Xjt1Oqt7c%3D10.1038/nmeth.1923 BoastLorraine K.ChelyshevaElena V.van der MerweVincentSchmidt-KüntzelAnneWalkerEli H.CilliersDeonGussetMarkusMarkerLaurieCheetah Translocation and Reintroduction Programs: Past, Present, and FutureCheetahs: Biology and Conservation201827528910.1016/B978-0-12-804088-1.00020-4 JohnsonWEThe late Miocene radiation of modern Felidae: a genetic assessmentScience2006311575773772006Sci...311...73J1:CAS:528:DC%2BD28Xht1ehuw%3D%3D10.1126/science.1122277 KatohKMisawaKKumaKMiyataTMAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transformNucleic Acids Research20023014305930661:CAS:528:DC%2BD38XlslOqu7s%3D10.1093/nar/gkf436 Andrews, S. et al. FastQC: a quality control tool for high throughput sequence data, www.bioinformatics.babraham.ac.uk/projects/fastqc/ (2010). Jones, E. et al. SciPy: Open source scientific tools for Python. (2001). UntergasserAPrimer3 - new capabilities and interfacesNucleic Acids Research20124015e1151:CAS:528:DC%2BC38Xht1Kjs7nF10.1093/nar/gks596 CA Driscoll (60751_CR16) 2002; 12 HA Ogilvie (60751_CR35) 2017; 1;34 60751_CR20 AM Bolger (60751_CR21) 2014; 30 ME Akhtar (60751_CR2) 1996; 57 R Barnett (60751_CR8) 2005; 15 H Kishino (60751_CR33) 1990; 31 SJ O’Brien (60751_CR10) 2017; 108 60751_CR3 60751_CR4 H Li (60751_CR23) 2009; 25 A Antunes (60751_CR25) 2007; 98 60751_CR1 P Dobrynin (60751_CR7) 2015; 16 G Li (60751_CR27) 2016; 26 M Rangarajan (60751_CR15) 1998; 95 Lorraine K. Boast (60751_CR17) 2018 K Katoh (60751_CR30) 2002; 30 A Untergasser (60751_CR19) 2012; 40 60751_CR11 R Bouckaert (60751_CR14) 2014; 10 60751_CR12 60751_CR34 A McKenna (60751_CR24) 2010; 20 AR Freeman (60751_CR28) 2001; 86 N Rohland (60751_CR18) 2007; 42 WE Johnson (60751_CR13) 2006; 311 60751_CR5 P Charruau (60751_CR9) 2011; 20 I Milne (60751_CR26) 2012; 14 J Trifinopoulos (60751_CR31) 2016; 44 B Langmead (60751_CR22) 2012; 9 Z Yang (60751_CR32) 2007; 24 PA Burger (60751_CR29) 2004; 338 MS Farhadinia (60751_CR6) 2017; 26 |
| References_xml | – volume: 108 start-page: 671 issue: 6 year: 2017 ident: 60751_CR10 publication-title: Journal of Heredity doi: 10.1093/jhered/esx047 contributor: fullname: SJ O’Brien – volume: 30 start-page: 3059 issue: 14 year: 2002 ident: 60751_CR30 publication-title: Nucleic Acids Research doi: 10.1093/nar/gkf436 contributor: fullname: K Katoh – volume: 15 start-page: R589 issue: 15 year: 2005 ident: 60751_CR8 publication-title: Current Biology doi: 10.1016/j.cub.2005.07.052 contributor: fullname: R Barnett – volume: 30 start-page: 2114 issue: 15 year: 2014 ident: 60751_CR21 publication-title: Bioinformatics doi: 10.1093/bioinformatics/btu170 contributor: fullname: AM Bolger – volume: 20 start-page: 1297 issue: 9 year: 2010 ident: 60751_CR24 publication-title: Genome Research doi: 10.1101/gr.107524.110 contributor: fullname: A McKenna – ident: 60751_CR11 – volume: 311 start-page: 73 issue: 5757 year: 2006 ident: 60751_CR13 publication-title: Science doi: 10.1126/science.1122277 contributor: fullname: WE Johnson – volume: 42 start-page: 343 issue: 3 year: 2007 ident: 60751_CR18 publication-title: Biotechniques doi: 10.2144/000112383 contributor: fullname: N Rohland – ident: 60751_CR34 – volume: 338 start-page: 111 issue: 1 year: 2004 ident: 60751_CR29 publication-title: Gene doi: 10.1016/j.gene.2004.05.020 contributor: fullname: PA Burger – volume: 14 start-page: 193 issue: 2 year: 2012 ident: 60751_CR26 publication-title: Briefings in Bioinformatics doi: 10.1093/bib/bbs012 contributor: fullname: I Milne – volume: 44 start-page: W232 issue: W1 year: 2016 ident: 60751_CR31 publication-title: Nucleic Acids Research doi: 10.1093/nar/gkw256 contributor: fullname: J Trifinopoulos – volume: 24 start-page: 1586 issue: 8 year: 2007 ident: 60751_CR32 publication-title: Molecular Biology and Evolution doi: 10.1093/molbev/msm088 contributor: fullname: Z Yang – volume: 25 start-page: 2078 issue: 16 year: 2009 ident: 60751_CR23 publication-title: Bioinformatics doi: 10.1093/bioinformatics/btp352 contributor: fullname: H Li – volume: 98 start-page: 414 issue: 5 year: 2007 ident: 60751_CR25 publication-title: Journal of Heredity doi: 10.1093/jhered/esm062 contributor: fullname: A Antunes – volume: 20 start-page: 706 issue: 4 year: 2011 ident: 60751_CR9 publication-title: Molecular Ecology doi: 10.1111/j.1365-294X.2010.04986.x contributor: fullname: P Charruau – start-page: 275 volume-title: Cheetahs: Biology and Conservation year: 2018 ident: 60751_CR17 doi: 10.1016/B978-0-12-804088-1.00020-4 contributor: fullname: Lorraine K. Boast – volume: 40 start-page: e115 issue: 15 year: 2012 ident: 60751_CR19 publication-title: Nucleic Acids Research doi: 10.1093/nar/gks596 contributor: fullname: A Untergasser – ident: 60751_CR4 – volume: 12 start-page: 414 issue: 3 year: 2002 ident: 60751_CR16 publication-title: Genome Research doi: 10.1101/gr.185702 contributor: fullname: CA Driscoll – volume: 31 start-page: 151 issue: 2 year: 1990 ident: 60751_CR33 publication-title: Journal of Molecular Evolution doi: 10.1007/BF02109483 contributor: fullname: H Kishino – volume: 95 start-page: 328 year: 1998 ident: 60751_CR15 publication-title: Journal of the Bombay Natural History Society contributor: fullname: M Rangarajan – volume: 57 start-page: 381 year: 1996 ident: 60751_CR2 publication-title: In Proceedings of the Indian History Congress contributor: fullname: ME Akhtar – volume: 26 start-page: 1027 issue: 5 year: 2017 ident: 60751_CR6 publication-title: Biodiversity and Conservation doi: 10.1007/s10531-017-1298-8 contributor: fullname: MS Farhadinia – ident: 60751_CR20 – volume: 9 start-page: 357 issue: 4 year: 2012 ident: 60751_CR22 publication-title: Nature Methods doi: 10.1038/nmeth.1923 contributor: fullname: B Langmead – volume: 26 start-page: 1 issue: 1 year: 2016 ident: 60751_CR27 publication-title: Genome Research doi: 10.1101/gr.186668.114 contributor: fullname: G Li – volume: 16 issue: 1 year: 2015 ident: 60751_CR7 publication-title: Genome Biology doi: 10.1186/s13059-015-0837-4 contributor: fullname: P Dobrynin – ident: 60751_CR1 – volume: 10 start-page: e1003537 issue: 4 year: 2014 ident: 60751_CR14 publication-title: PLoS Computational Biology doi: 10.1371/journal.pcbi.1003537 contributor: fullname: R Bouckaert – volume: 86 start-page: 355 issue: 3 year: 2001 ident: 60751_CR28 publication-title: Heredity doi: 10.1046/j.1365-2540.2001.00840.x contributor: fullname: AR Freeman – ident: 60751_CR5 – volume: 1;34 start-page: 2101 issue: 8 year: 2017 ident: 60751_CR35 publication-title: Molecular Biology and Evolution doi: 10.1093/molbev/msx126 contributor: fullname: HA Ogilvie – ident: 60751_CR3 – ident: 60751_CR12 |
| SSID | ssj0000529419 |
| Score | 2.3680403 |
| Snippet | The Indian cheetah was hunted to extinction by the mid-20th century. While analysis of 139 bp of mitochondrial DNA (mtDNA) has confirmed that the Indian... Abstract The Indian cheetah was hunted to extinction by the mid-20th century. While analysis of 139 bp of mitochondrial DNA (mtDNA) has confirmed that the... |
| SourceID | pubmedcentral proquest crossref pubmed springer |
| SourceType | Open Access Repository Aggregation Database Index Database Publisher |
| StartPage | 4618 |
| SubjectTerms | 45 45/23 631/158/2464 631/181/457 631/181/757 Acinonyx - classification Acinonyx - genetics Acinonyx jubatus jubatus Acinonyx jubatus soemmeringii Acinonyx jubatus venaticus Africa Animals DNA, Mitochondrial Extinct species Extinction, Biological Genetic Variation Genetics, Population Humanities and Social Sciences Importation India Mitochondrial DNA multidisciplinary Phylogeny Phylogeography Reintroduction Science Science (multidisciplinary) |
| SummonAdditionalLinks | – databaseName: Health & Medical Complete (ProQuest Database) dbid: 7X7 link: http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwfV3PT9swFLZGJyQuCDYYhTJ50m6bRRI7sXNCFQyxSeM0pN4ix3bUSsMtJD30v-c9Jw0qFZxtx7G_F38vfr8I-Q6srnWlBCtNKpngImUqrgQT1lZRrss0iTDe-e9ddnsv_kzSSXfhVnduleszMRzUdm7wjvwCvTeADWMuLxePDKtGoXW1K6GxQz7GCUwL8iwnsr9jQSuWiPMuVibi6qIGvsKYMvxnArKMmdzkoy0lc9tX8pXBNPDQzQHZ7xRIOm4RPyQfnP9EdtuSkqvPZDb2IcSRPjTXd2OK0SMUdDwKZ_DMm4b-9igQFKByjZ7SerkINgO69Jjr34D--X9FrXMLatFjI6TqbJ_SVhTqh9ZH5P7m17-rW9aVU2AGtKqGVZHWKjORNICGNKlVmc4yCQpKZCNlNTC7qnKTSWFjZ13uuAMGLWXlROJMpvgxGfi5dyeECl3yVEcWr1CFrrQuJZwFxpo8VUleuSH5sd7UYtFmzSiCtZurooWgAAiKAEEhh2S03vei-4Lq4gXvIfnWN4Pso0FDezdfhj6Sg4InkyH50sLUT8cTzCuUQYvcALDvgHm1N1v8bBrya0tkcAUjf66hfnmtt1dx-v4qzshegmKHroDJiAyap6U7B32mKb8GoX0GQu_1pg priority: 102 providerName: ProQuest – databaseName: Scholars Portal Open Access Journals dbid: M48 link: http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV1LT9wwEB5RqlZcKvqiS2nlSr21aRPHiZ1DhVa0CJDg1JW4RY7tiJXALGxW6v57ZuxkqwV66dl2nPgbez5nXgCfUatr3SqRNKaQichFkaisFYmwtk0r3RQ8pXjn07PyaCJOzovzDRjKHfULOH_0akf1pCa3l9_-3Cz3ccP_iCHj6vsclRAFitFFCDVglsgn8JTjvCTxpz3dj7m-eSWyqo-deXzoFjzPOaWkKfm6qnrAPx-6Ud6zpQYVdbgNL3puycZRGF7ChvOv4FmsNrl8DdOxD9GP7Kr7eTZmFFjCkP4xPJ6n3nTs2JOsMETRdfqCzRezYE5gC09lAAxS08sls87NmCVnjpDFMz4lFhtaDZ2_gcnhr98HR0lfaSExSLi6pE21VqVJpUGgpCmsKnVZSuQuqU2V1aj0VVuZUgqbOesqlztUro1sneDOlCp_C5v-2rt3wIRu8kKnlv6uCt1q3Ug8Jow1VaF41boRfBkWtZ7FhBp1MITnqo5o1IhGHdCo5Qj2hnWvB9moyZEHiVGWY_OnVTNuC7J1aO-uF6GPzJH7ST6CnQjTaroB3xHINQBXHSjl9nqLn16E1NuSlLvCkV8HqP--1r-_Yve_J3oPW5yEkxwI-R5sdrcL9wFZUNd8DKJ9B1nABlE priority: 102 providerName: Scholars Portal – databaseName: SpringerOpen dbid: C6C link: http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwlV1JS8QwFA4uCF7E3XEjgjcttk2apMdhVFTQk4K3kiYpDmhmcDoH_73vpZ3KuBw8J-mS76Xf17wlhJwCq2tdKR6VJpMRZzyLVFLxiFtbxbkuszTGfOf7B3HzxO-es-e2TA7mwsz575m6mADBYBIY_uQAuyWRXCTLWSJitOCBGHT7Keix4kne5sX8PnSee34Iyp9xkd-co4FzrtfJWisWab9Bd4MsOL9JVprjIz-2yLDvQzojfasvH_oUM0Uo6DkK39uhNzW99Qg-BVhcrV_oZDoO_gE69VjX34DWfP2g1rkxtRidEcpyNldpTg_qhk62ydP11ePgJmqPTogMKKg6qmKtlTCxNDDz0mRWCS2EBDES21hZDSyuqtwIyW3irMsdc8CWpawcT50Riu2QJT_ybo9QrkuW6djidinXldalhHVvrMkzleaV65Gz2aQW46ZCRhE820wVDQQFQFAECArZI4ezeS_a1TIpMDIHlE7CoPmkawY7R-eF9m40DX0kAzEn0x7ZbWDqbsdSrCEkoEXOAdh1wBra8y1--BJqaUtkawUjz2dQfz3W32-x_7_uB2Q1RTPEMMD0kCzV71N3BFqmLo-DEX8Cb9Dunw priority: 102 providerName: Springer Nature |
| Title | Ancient mtDNA from the extinct Indian cheetah supports unexpectedly deep divergence from African cheetahs |
| URI | https://link.springer.com/article/10.1038/s41598-020-60751-7 https://www.ncbi.nlm.nih.gov/pubmed/32165662 https://www.proquest.com/docview/2376710137 https://search.proquest.com/docview/2377339272 https://pubmed.ncbi.nlm.nih.gov/PMC7067882 |
| Volume | 10 |
| hasFullText | 1 |
| inHoldings | 1 |
| isFullTextHit | |
| isPrint | |
| link | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV3Na9swFH-0HYNdxr7ntQsa7La5sSVZko9Z1tINEspYITcjSzINNGpYnEP_-z7Jdras7LKLwUi2ZP2e9X7S-xDAR9TqWjeKp7UpZMoZL1KVNzzl1jZZqeuCZiHeeTYXF1f8-6JYHEAxxMJEp31TL0_9zerUL6-jb-V6ZcaDn9j4cjaVYYpVdHwIh5KxP5boXUJvWvK87ANkMqbGG1RSIZAsLJRQQ-ZpOHmP0ZB3RtB9ffSAZD70lfzLYBr10PkzeNoTSDLpOvocDpx_AY-7IyXvXsJy4mOII1m1X-cTEqJHCHI8gnPw0puWfPNBIAhC5Vp9TTbbdbQZkK0Puf4N8s-bO2KdWxMbPDZiqs7uLd2JQrtHN6_g6vzs5_Qi7Y9TSA2yqjZtMq2VMJk0iIY0hVVCCyGRoGQ2U1ajZldNaYTkNnfWlY451KC1bBynzgjFXsORv_XuLRCua1bozIYtVK4brWuJc4GxpiwULRuXwKdhUKt1lzWjitZupqoOjQrRqCIalUzgZBj3qv-DNlXw1kH2kzMs_rArRtkPBg3t3e021kH8SyppAm86mHbNDfgmIPcA3FUIebX3S1DcYn7tXrwS-DxA_btb__6Kd__d0DE8oUE4g5cgPYGj9tfWvUeq09YjFPCFHMGjL2fzyx94NxXTUdw2wOuMq1EU_XsIVgPy |
| link.rule.ids | 230,315,733,786,790,870,891,12083,21416,24346,27955,27956,31752,31753,33777,33778,41153,42222,43343,43838,51609,53825,53827,74100,74657 |
| linkProvider | National Library of Medicine |
| linkToHtml | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwfV1Lb9QwELagCMEFlRboQltcqTewmsRO7JzQqg9tod1TK-3NcmxHXYl6F5I99N8z42RTLRWc7Tzsb-JvMk9CjoHVjamVYJXNJRNc5EyltWDCuTopTZVnCeY7X0-Lya34PstnvcGt6cMq12diPKjdwqKN_ASjN4ANUy6_LX8x7BqF3tW-hcZz8kJwLlDO5UwONhb0Yom07HNlEq5OGuArzCnDfyYgy5TJTT56omQ-jZX8y2Eaeehim7zpFUg67hB_S575sENedi0lH3bJfBxiiiO9b8-mY4rZIxR0PApn8DzYll4GFAgKUPnW3NFmtYw-A7oKWOvfgv7584E675fUYcRGLNXZ3aXrKDRc2rwjtxfnN6cT1rdTYBa0qpbViTGqsIm0gIa0uVOFKQoJCkriEuUMMLuqS1tI4VLvfOm5BwatZO1F5m2h-HuyFRbB7xEqTMVzkzg0oQpTG1NJOAuss2WusrL2I_Jlval62VXN0NHbzZXuINAAgY4QaDki--t91_0X1OhHvEfkaBgG2UeHhgl-sYpzJAcFT2Yj8qGDaXgcz7CuUAEjcgPAYQLW1d4cCfO7WF9bIoMruPLrGurH1_r3Kj7-fxWfyavJzfWVvrqc_vhEXmcoghgWmO2Trfb3yh-AbtNWh1GA_wDx5_iT |
| linkToPdf | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwfV1Lb9QwELagFYgL4s1CASNxg2iT2LGdE1poVy2PVYWo1Fvk-KGuBN6FZA_998w43lRLBWfbSexv7G_ieRHyBlhda6941ppKZpzxKlOF5xm31ue1bqsyx3jnrwtxfMY_nVfnyf-pS26V2zMxHtR2ZfCOfIreG8CGBZNTn9wiTg_n79e_MqwghZbWVE7jJtmXXFTwI7b_4Whx-m28cUGbFi_qFDmTMzXtgL0wwgz_oIA6i0zustM1lfO65-Rf5tPISvN75G5SJ-lswP8-ueHCA3JrKDB5-ZAsZyEGPNKf_eFiRjGWhILGR2Fay2B6ehJQPCgA53p9QbvNOloQ6CZg5n8D2uiPS2qdW1OL_hsxcefwlKG-0Di0e0TO5kffPx5nqbhCZkDH6jOfa62EyaUBbKSprBJaCAnqSm5zZTXwvPK1EZLbwllXO-aAT1vpHS-dEYo9JnthFdxTQrluWaVzixeqXHutWwkng7GmrlRZezchb7eL2qyHHBpNtH0z1QwQNABBEyFo5IQcbNe9Sfupa67Qn5DXYzPsBDRv6OBWm9hHMlD3ZDkhTwaYxtexErMMCWiROwCOHTDL9m5LWF7EbNsS-VzByHdbqK8-69-zePb_Wbwit0F6my8ni8_PyZ0SJRB9BMsDstf_3rgXoOj07cskwX8A1K7-Ng |
| openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Ancient+mtDNA+from+the+extinct+Indian+cheetah+supports+unexpectedly+deep+divergence+from+African+cheetahs&rft.jtitle=Scientific+reports&rft.au=Rai%2C+Niraj&rft.au=Verma%2C+Sunil+Kumar&rft.au=Gaur%2C+Ajay&rft.au=Iliescu%2C+Florin+Mircea&rft.date=2020-03-12&rft.pub=Nature+Publishing+Group+UK&rft.eissn=2045-2322&rft.volume=10&rft_id=info:doi/10.1038%2Fs41598-020-60751-7&rft_id=info%3Apmid%2F32165662&rft.externalDBID=PMC7067882 |
| thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=2045-2322&client=summon |
| thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=2045-2322&client=summon |
| thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=2045-2322&client=summon |