Exploration of stem endophytic communities revealed developmental stage as one of the drivers of fungal endophytic community assemblages in two Amazonian hardwood genera

Many aspects of the dynamics of tropical fungal endophyte communities are poorly known, including the influence of host taxonomy, host life stage, host defence, and host geographical distance on community assembly and composition. Recent fungal endophyte research has focused on Hevea brasiliensis du...

Full description

Saved in:
Bibliographic Details
Published inScientific reports Vol. 9; no. 1; pp. 12685 - 14
Main Authors Skaltsas, Demetra N., Badotti, Fernanda, Vaz, Aline Bruna Martins, Silva, Felipe Ferreira da, Gazis, Romina, Wurdack, Kenneth, Castlebury, Lisa, Góes-Neto, Aristóteles, Chaverri, Priscila
Format Journal Article
LanguageEnglish
Published London Nature Publishing Group UK 03.09.2019
Nature Publishing Group
Subjects
631/158/2450
631/449/2676
Biodiversity
Brazil
Comparative Genomic Hybridization
DNA, Fungal - chemistry
DNA, Fungal - metabolism
Endophytes
Fungi - genetics
Fungi - isolation & purification
Genera
Hevea
Hevea - growth & development
Hevea - microbiology
Humanities and Social Sciences
Micrandra
multidisciplinary
Mycobiome
Rubber
Sampling
Science
Science (multidisciplinary)
Seedlings
Seedlings - microbiology
Sequence Analysis, DNA
Taxonomy
Brazil
Online AccessGet full text

Cover

Abstract Many aspects of the dynamics of tropical fungal endophyte communities are poorly known, including the influence of host taxonomy, host life stage, host defence, and host geographical distance on community assembly and composition. Recent fungal endophyte research has focused on Hevea brasiliensis due to its global importance as the main source of natural rubber. However, almost no data exist on the fungal community harboured within other Hevea species or its sister genus Micrandra . In this study, we expanded sampling to include four additional Hevea spp. and two Micrandra spp., as well as two host developmental stages. Through culture-dependent and -independent (metagenomic) approaches, a total of 381 seedlings and 144 adults distributed across three remote areas within the Peruvian Amazon were sampled. Results from both sampling methodologies indicate that host developmental stage had a greater influence in community assemblage than host taxonomy or locality. Based on FunGuild ecological guild assignments, saprotrophic and mycotrophic endophytes were more frequent in adults, while plant pathogens were dominant in seedlings. Trichoderma was the most abundant genus recovered from adult trees while Diaporthe prevailed in seedlings. Potential explanations for that disparity of abundance are discussed in relation to plant physiological traits and community ecology hypotheses.
AbstractList Abstract Many aspects of the dynamics of tropical fungal endophyte communities are poorly known, including the influence of host taxonomy, host life stage, host defence, and host geographical distance on community assembly and composition. Recent fungal endophyte research has focused on Hevea brasiliensis due to its global importance as the main source of natural rubber. However, almost no data exist on the fungal community harboured within other Hevea species or its sister genus Micrandra . In this study, we expanded sampling to include four additional Hevea spp. and two Micrandra spp., as well as two host developmental stages. Through culture-dependent and -independent (metagenomic) approaches, a total of 381 seedlings and 144 adults distributed across three remote areas within the Peruvian Amazon were sampled. Results from both sampling methodologies indicate that host developmental stage had a greater influence in community assemblage than host taxonomy or locality. Based on FunGuild ecological guild assignments, saprotrophic and mycotrophic endophytes were more frequent in adults, while plant pathogens were dominant in seedlings. Trichoderma was the most abundant genus recovered from adult trees while Diaporthe prevailed in seedlings. Potential explanations for that disparity of abundance are discussed in relation to plant physiological traits and community ecology hypotheses.
Many aspects of the dynamics of tropical fungal endophyte communities are poorly known, including the influence of host taxonomy, host life stage, host defence, and host geographical distance on community assembly and composition. Recent fungal endophyte research has focused on Hevea brasiliensis due to its global importance as the main source of natural rubber. However, almost no data exist on the fungal community harboured within other Hevea species or its sister genus Micrandra . In this study, we expanded sampling to include four additional Hevea spp. and two Micrandra spp., as well as two host developmental stages. Through culture-dependent and -independent (metagenomic) approaches, a total of 381 seedlings and 144 adults distributed across three remote areas within the Peruvian Amazon were sampled. Results from both sampling methodologies indicate that host developmental stage had a greater influence in community assemblage than host taxonomy or locality. Based on FunGuild ecological guild assignments, saprotrophic and mycotrophic endophytes were more frequent in adults, while plant pathogens were dominant in seedlings. Trichoderma was the most abundant genus recovered from adult trees while Diaporthe prevailed in seedlings. Potential explanations for that disparity of abundance are discussed in relation to plant physiological traits and community ecology hypotheses.
Many aspects of the dynamics of tropical fungal endophyte communities are poorly known, including the influence of host taxonomy, host life stage, host defence, and host geographical distance on community assembly and composition. Recent fungal endophyte research has focused on Hevea brasiliensis due to its global importance as the main source of natural rubber. However, almost no data exist on the fungal community harboured within other Hevea species or its sister genus Micrandra. In this study, we expanded sampling to include four additional Hevea spp. and two Micrandra spp., as well as two host developmental stages. Through culture-dependent and -independent (metagenomic) approaches, a total of 381 seedlings and 144 adults distributed across three remote areas within the Peruvian Amazon were sampled. Results from both sampling methodologies indicate that host developmental stage had a greater influence in community assemblage than host taxonomy or locality. Based on FunGuild ecological guild assignments, saprotrophic and mycotrophic endophytes were more frequent in adults, while plant pathogens were dominant in seedlings. Trichoderma was the most abundant genus recovered from adult trees while Diaporthe prevailed in seedlings. Potential explanations for that disparity of abundance are discussed in relation to plant physiological traits and community ecology hypotheses.
ArticleNumber 12685
Author Vaz, Aline Bruna Martins
Gazis, Romina
Silva, Felipe Ferreira da
Wurdack, Kenneth
Castlebury, Lisa
Chaverri, Priscila
Skaltsas, Demetra N.
Badotti, Fernanda
Góes-Neto, Aristóteles
Author_xml – sequence: 1
  givenname: Demetra N.
  orcidid: 0000-0002-8752-7731
  surname: Skaltsas
  fullname: Skaltsas, Demetra N.
  email: demetraskaltsas@gmail.com
  organization: University of Maryland, Department of Plant Science and Landscape Architecture, U.S. Department of Agriculture, Agricultural Research Service, Mycology and Nematology Genetic Diversity and Biology Laboratory, Oak Ridge Institute for Science and Education, ARS Research Participation Program, MC-100-44
– sequence: 2
  givenname: Fernanda
  surname: Badotti
  fullname: Badotti, Fernanda
  organization: Centro Federal de Educação Tecnológica de Minas Gerais, Departamento de Química, 30421-169
– sequence: 3
  givenname: Aline Bruna Martins
  surname: Vaz
  fullname: Vaz, Aline Bruna Martins
  organization: Universidade Federal de Minas Gerais, Departamento de Microbiologia, 31270-901
– sequence: 4
  givenname: Felipe Ferreira da
  orcidid: 0000-0002-3920-3396
  surname: Silva
  fullname: Silva, Felipe Ferreira da
  organization: Universidade Federal de Minas Gerais, Departamento de Microbiologia, 31270-901
– sequence: 5
  givenname: Romina
  surname: Gazis
  fullname: Gazis, Romina
  organization: University of Florida, Department of Plant Pathology, Tropical Research & Education Center
– sequence: 6
  givenname: Kenneth
  surname: Wurdack
  fullname: Wurdack, Kenneth
  organization: Smithsonian Institution, Department of Botany, National Museum of Natural History
– sequence: 7
  givenname: Lisa
  orcidid: 0000-0002-6131-7736
  surname: Castlebury
  fullname: Castlebury, Lisa
  organization: U.S. Department of Agriculture, Agricultural Research Service, Mycology and Nematology Genetic Diversity and Biology Laboratory
– sequence: 8
  givenname: Aristóteles
  surname: Góes-Neto
  fullname: Góes-Neto, Aristóteles
  organization: Centro Federal de Educação Tecnológica de Minas Gerais, Departamento de Química, 30421-169
– sequence: 9
  givenname: Priscila
  surname: Chaverri
  fullname: Chaverri, Priscila
  organization: University of Maryland, Department of Plant Science and Landscape Architecture, Escuela de Biología, Centro de Investigaciones en Productos Naturales, Universidad de Costa Rica, San Pedro
BackLink https://www.ncbi.nlm.nih.gov/pubmed/31481728$$D View this record in MEDLINE/PubMed
BookMark eNp9ks1u3SAQhVGVqEnTvEAXFVI33bg1GGy8qRRF6Y8UqZtkjTCMfYkMuGDf5PaN-pbFvWmaVlXYAJrvHGbEeYEOfPCA0CtSviNlJd4nRngripK0BRMtqwr6DB3TkvGCVpQePDofodOUbsq8OG0ZaZ-jo4owQRoqjtGPi7tpDFHNNngcepxmcBi8CdNmN1uNdXBu8Xa2kHCELagRDDb5MIbJgZ_VmCVqAKwSzg2uFvMGsIl2CzGt137xQ6b-47nLogSuG7M-YevxfBvwmVPfg7fK442K5jYEgwfwENVLdNirMcHp_X6Crj9eXJ1_Li6_fvpyfnZZaE7IXNTKCN31vDS8I4pWumo5UM1Ew7mpW9MRIwRwAxUICrUBMB1rNAPaGtCGVSfow953WjoHRuchoxrlFK1TcSeDsvLvircbOYStrBtKS86zwdt7gxi-LZBm6WzSMI7KQ1iSpFQwXjNSNxl98w96E5bo83grlTsXJaWZontKx5BShP6hGVLKNQxyHwaZwyB_hUGuotePx3iQ_P76DFR7IOWSHyD-efsJ25-IDsgT
CitedBy_id crossref_primary_10_3389_fmicb_2021_689374
crossref_primary_10_1007_s11557_022_01776_2
crossref_primary_10_1016_j_funeco_2021_101137
crossref_primary_10_3390_jof9070706
crossref_primary_10_3390_jof8040373
crossref_primary_10_3389_fmicb_2020_01257
crossref_primary_10_1016_j_foreco_2020_118350
crossref_primary_10_1144_SP511_2020_47
crossref_primary_10_1515_jbcpp_2020_0479
crossref_primary_10_7717_peerj_10487
crossref_primary_10_3389_ffgc_2021_655769
crossref_primary_10_3389_fsufs_2021_688393
crossref_primary_10_1016_j_sajb_2022_05_033
crossref_primary_10_3389_fsufs_2021_644230
crossref_primary_10_1016_j_micres_2022_127128
crossref_primary_10_1186_s12862_022_01974_2
crossref_primary_10_3390_f14091764
crossref_primary_10_1080_00275514_2023_2299658
crossref_primary_10_3390_d12110432
crossref_primary_10_1007_s00253_020_10466_6
crossref_primary_10_3390_agriculture10060205
crossref_primary_10_1007_s11104_021_05048_y
Cites_doi 10.1007/s10531-011-0004-5
10.1111/j.1365-294X.2010.04948.x
10.1086/282687
10.1016/j.funbio.2013.01.007
10.1093/nar/gkv1113
10.1093/bioinformatics/btr381
10.1046/j.1365-2699.1999.00305.x
10.1139/cjfr-2014-0560
10.1016/j.mycres.2006.01.009
10.1016/j.funeco.2013.12.005
10.1016/j.biocon.2017.10.035
10.1111/j.1365-294X.2011.05110.x
10.1016/j.fbr.2011.01.001
10.3389/fpls.2017.00192
10.1139/X06-293
10.1186/1471-2105-12-35
10.1080/00275514.1994.12026423
10.1093/database/bau061
10.1007/s11557-006-0053-4
10.1111/2041-210X.12349
10.1016/j.funeco.2014.10.004
10.1016/j.mycres.2009.09.004
10.1080/02827581.2013.844850
10.1016/j.biocontrol.2015.11.011
10.1264/jsme2.ME14121
10.4137/EBO.S21501
10.5897/AJMR2013.6446
10.1111/j.2006.0030-1299.14714.x
10.1016/j.funbio.2015.07.003
10.4137/EBO.S653
10.1093/femsre/fuv045
10.1093/aob/mcm133
10.2136/sssaj2004.0289
10.3389/fmicb.2019.01220
10.1111/1758-2229.12418
10.1079/9781845930615.0000
10.1017/S0266467416000535
10.1016/j.funeco.2015.06.006
10.1016/j.ympev.2006.07.012
10.1111/mec.13510
10.1016/j.funeco.2013.12.008
10.1007/s10886-005-5791-2
10.1007/s11557-006-0014-y
10.1038/nrmicro2795
10.1111/j.1469-8137.2010.03197.x
10.1201/9781315119496
10.1890/13-0133.1
10.1016/j.funeco.2017.12.003
10.5897/AJB2012.2958
10.1111/j.1469-8137.2011.03707.x
10.1007/978-81-322-1575-2
10.1007/s00284-019-01632-9
10.1038/s41598-018-34619-w
10.1007/s00253-012-4574-2
10.1111/j.1469-8137.1990.tb00513.x
10.1016/j.funeco.2015.04.001
10.1016/j.myc.2015.10.002
10.1007/BF00985567
10.1111/1574-6941.12046
10.1093/bib/bbn013
10.1016/j.funeco.2009.12.001
10.1159/000345549
10.1016/j.soilbio.2017.06.004
10.1016/j.funeco.2014.08.006
10.1111/j.1574-6941.2012.01437.x
10.1016/j.mycres.2008.06.022
10.1046/j.1469-8137.2003.00885.x
10.1111/jam.12311
10.3389/fmicb.2016.00600
10.7171/jbt.16-2704-002
ContentType Journal Article
Copyright The Author(s) 2019
2019. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.
Copyright_xml – notice: The Author(s) 2019
– notice: 2019. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.
DBID C6C
CGR
CUY
CVF
ECM
EIF
NPM
AAYXX
CITATION
3V.
7X7
7XB
88A
88E
88I
8FE
8FH
8FI
8FJ
8FK
ABUWG
AFKRA
AZQEC
BBNVY
BENPR
BHPHI
CCPQU
DWQXO
FYUFA
GHDGH
GNUQQ
HCIFZ
K9.
LK8
M0S
M1P
M2P
M7P
PIMPY
PQEST
PQQKQ
PQUKI
PRINS
Q9U
7X8
5PM
DOI 10.1038/s41598-019-48943-2
DatabaseName Springer Nature Open Access Journals
Medline
MEDLINE
MEDLINE (Ovid)
MEDLINE
MEDLINE
PubMed
CrossRef
ProQuest Central (Corporate)
Health & Medical Collection
ProQuest Central (purchase pre-March 2016)
Biology Database (Alumni Edition)
Medical Database (Alumni Edition)
Science Database (Alumni Edition)
ProQuest SciTech Collection
ProQuest Natural Science Collection
Hospital Premium Collection
Hospital Premium Collection (Alumni Edition)
ProQuest Central (Alumni) (purchase pre-March 2016)
ProQuest Central (Alumni)
ProQuest Central
ProQuest Central Essentials
Biological Science Collection
ProQuest Central
Natural Science Collection
ProQuest One Community College
ProQuest Central
Health Research Premium Collection
Health Research Premium Collection (Alumni)
ProQuest Central Student
SciTech Premium Collection
ProQuest Health & Medical Complete (Alumni)
ProQuest Biological Science Collection
Health & Medical Collection (Alumni Edition)
PML(ProQuest Medical Library)
ProQuest Science Journals
Biological Science Database
Publicly Available Content (ProQuest)
ProQuest One Academic Eastern Edition (DO NOT USE)
ProQuest One Academic
ProQuest One Academic UKI Edition
ProQuest Central China
ProQuest Central Basic
MEDLINE - Academic
PubMed Central (Full Participant titles)
DatabaseTitle MEDLINE
Medline Complete
MEDLINE with Full Text
PubMed
MEDLINE (Ovid)
CrossRef
Publicly Available Content Database
ProQuest Central Student
ProQuest Central Essentials
ProQuest Health & Medical Complete (Alumni)
ProQuest Central (Alumni Edition)
SciTech Premium Collection
ProQuest One Community College
ProQuest Natural Science Collection
ProQuest Central China
ProQuest Biology Journals (Alumni Edition)
ProQuest Central
Health Research Premium Collection
Health and Medicine Complete (Alumni Edition)
Natural Science Collection
ProQuest Central Korea
Biological Science Collection
ProQuest Medical Library (Alumni)
ProQuest Science Journals (Alumni Edition)
ProQuest Biological Science Collection
ProQuest Central Basic
ProQuest Science Journals
ProQuest One Academic Eastern Edition
ProQuest Hospital Collection
Health Research Premium Collection (Alumni)
Biological Science Database
ProQuest SciTech Collection
ProQuest Hospital Collection (Alumni)
ProQuest Health & Medical Complete
ProQuest Medical Library
ProQuest One Academic UKI Edition
ProQuest One Academic
ProQuest Central (Alumni)
MEDLINE - Academic
DatabaseTitleList CrossRef


Publicly Available Content Database
MEDLINE
Database_xml – sequence: 1
  dbid: C6C
  name: Springer Nature Open Access Journals
  url: http://www.springeropen.com/
  sourceTypes: Publisher
– sequence: 2
  dbid: NPM
  name: PubMed
  url: https://proxy.k.utb.cz/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed
  sourceTypes: Index Database
– sequence: 3
  dbid: EIF
  name: MEDLINE
  url: https://proxy.k.utb.cz/login?url=https://www.webofscience.com/wos/medline/basic-search
  sourceTypes: Index Database
– sequence: 4
  dbid: BENPR
  name: ProQuest Central
  url: https://www.proquest.com/central
  sourceTypes: Aggregation Database
DeliveryMethod fulltext_linktorsrc
Discipline Biology
EISSN 2045-2322
EndPage 14
ExternalDocumentID 10_1038_s41598_019_48943_2
31481728
Genre Research Support, U.S. Gov't, Non-P.H.S
Journal Article
GeographicLocations Brazil
GeographicLocations_xml – name: Brazil
GrantInformation_xml – fundername: National Science Foundation (NSF)
  grantid: DEB-925672; DEB-1019972
  funderid: https://doi.org/10.13039/100000001
– fundername: ;
  grantid: DEB-925672; DEB-1019972
GroupedDBID 0R~
3V.
4.4
53G
5VS
7X7
88A
88E
88I
8FE
8FH
8FI
8FJ
AAFWJ
AAJSJ
AAKDD
ABDBF
ABUWG
ACGFS
ACSMW
ADBBV
ADRAZ
AENEX
AFKRA
AJTQC
ALIPV
ALMA_UNASSIGNED_HOLDINGS
AOIJS
AZQEC
BAWUL
BBNVY
BCNDV
BENPR
BHPHI
BPHCQ
BVXVI
C6C
CCPQU
DIK
DWQXO
EBD
EBLON
EBS
EJD
ESX
FYUFA
GNUQQ
GROUPED_DOAJ
GX1
HCIFZ
HH5
HMCUK
HYE
KQ8
LK8
M0L
M1P
M2P
M48
M7P
M~E
NAO
OK1
PIMPY
PQQKQ
PROAC
PSQYO
RIG
RNT
RNTTT
RPM
SNYQT
UKHRP
AFPKN
CGR
CUY
CVF
ECM
EIF
NPM
AAYXX
CITATION
7XB
8FK
K9.
PQEST
PQUKI
PRINS
Q9U
7X8
AFGXO
5PM
ID FETCH-LOGICAL-c511t-6ad8cbf50d5b1a23c395e2c48755d69db1d88e5de3e82e6deedb47c4e29decd43
IEDL.DBID RPM
ISSN 2045-2322
IngestDate Tue Sep 17 21:07:48 EDT 2024
Fri Aug 16 07:04:41 EDT 2024
Thu Oct 10 16:22:21 EDT 2024
Fri Aug 23 01:26:38 EDT 2024
Sat Sep 28 08:45:58 EDT 2024
Fri Oct 11 20:49:48 EDT 2024
IsDoiOpenAccess true
IsOpenAccess true
IsPeerReviewed true
IsScholarly true
Issue 1
Language English
License Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
LinkModel DirectLink
MergedId FETCHMERGED-LOGICAL-c511t-6ad8cbf50d5b1a23c395e2c48755d69db1d88e5de3e82e6deedb47c4e29decd43
Notes ObjectType-Article-1
SourceType-Scholarly Journals-1
ObjectType-Feature-2
content type line 23
ORCID 0000-0002-8752-7731
0000-0002-6131-7736
0000-0002-3920-3396
OpenAccessLink https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6722055/
PMID 31481728
PQID 2283958022
PQPubID 2041939
PageCount 14
ParticipantIDs pubmedcentral_primary_oai_pubmedcentral_nih_gov_6722055
proquest_miscellaneous_2284564167
proquest_journals_2283958022
crossref_primary_10_1038_s41598_019_48943_2
pubmed_primary_31481728
springer_journals_10_1038_s41598_019_48943_2
PublicationCentury 2000
PublicationDate 2019-09-03
PublicationDateYYYYMMDD 2019-09-03
PublicationDate_xml – month: 09
  year: 2019
  text: 2019-09-03
  day: 03
PublicationDecade 2010
PublicationPlace London
PublicationPlace_xml – name: London
– name: England
PublicationTitle Scientific reports
PublicationTitleAbbrev Sci Rep
PublicationTitleAlternate Sci Rep
PublicationYear 2019
Publisher Nature Publishing Group UK
Nature Publishing Group
Publisher_xml – name: Nature Publishing Group UK
– name: Nature Publishing Group
References JostLEntropy and diversityOikos200611336337510.1111/j.2006.0030-1299.14714.x
ChaoARarefaction and extrapolation with Hill numbers: a framework for sampling and estimation in species diversity studiesEcological Monographs201484456710.1890/13-0133.1
MatsumuraEFukudaKA comparison of fungal endophytic community diversity in tree leaves of rural and urban temperate forests of Kanto district, eastern JapanFungal biology20131171912012353787610.1016/j.funbio.2013.01.007
HansonCAFuhrmanJAHorner-DevineMCMartinyJBBeyond biogeographic patterns: processes shaping the microbial landscapeNature Reviews Microbiology2012104971:CAS:528:DC%2BC38XmvFCjtrk%3D2258036510.1038/nrmicro2795
LiebereiRSouth American leaf blight of the rubber tree (Hevea spp.): new steps in plant domestication using physiological features and molecular markersAnnals of botany20071001125114217650512275924110.1093/aob/mcm133
LiebereiRFockHPBiehlBCyanogenesis inhibits active pathogen defense in plants: Inhibition by gaseous HCN of photosynthetic CO~2 fixation and respiration in intact leavesJournal of applied botany1996702302381:CAS:528:DyaK2sXhvVKls78%3D
EvansHCHolmesKAThomasSEEndophytes and mycoparasites associated with an indigenous forest tree, Theobroma gileri, in Ecuador and a preliminary assessment of their potential as biocontrol agents of cocoa diseasesMycological Progress2003214916010.1007/s11557-006-0053-4
ChaoAJostLEstimating diversity and entropy profiles via discovery rates of new speciesMethods in Ecology and Evolution2015687388210.1111/2041-210X.12349
ManleyLJMaDLevineSSMonitoring error rates In Illumina sequencingJournal of biomolecular techniques: JBT2016271252767235210.7171/jbt.16-2704-0025026502
Dighton, J. & White, J. F. The fungal community: its organization and role in the ecosystem. (CRC Press, 2017).
GazisRRehnerSChaverriPSpecies delimitation in fungal endophyte diversity studies and its implications in ecological and biogeographic inferencesMolecular Ecology201120300130132155778310.1111/j.1365-294X.2011.05110.x
LünebergKSchneiderDBrinkmannNSiebeCDanielRLand use change and water quality use for irrigation alters drylands soil fungal community in the Mezquital Valley, MexicoFrontiers in Microbiology201910122031258519658770410.3389/fmicb.2019.01220
HigginsKLArnoldAEColeyPDKursarTACommunities of fungal endophytes in tropical forest grasses: highly diverse host-and habitat generalists characterized by strong spatial structureFungal Ecology2014811110.1016/j.funeco.2013.12.005
OonoRLefèvreESimhaALutzoniFA comparison of the community diversity of foliar fungal endophytes between seedling and adult loblolly pines (Pinus taeda)Fungal biology201511991792826399186458921610.1016/j.funbio.2015.07.003
ZeilingerSFriends or foes? Emerging insights from fungal interactions with plantsFEMS microbiology reviews20154018220726591004477827110.1093/femsre/fuv045
WhiteTJBrunsTLeeSTaylorJWAmplification and direct sequencing of fungal ribosomal RNA genes for phylogeneticsPCR protocols: a guide to methods and applications199018315322
LeBrunESTaylorDLKingRSBackJAKangSRivers may constitute an overlooked avenue of dispersal for terrestrial fungiFungal ecology201832727910.1016/j.funeco.2017.12.003
McMahonSKWilliamsMABottomleyPJMyroldDDDynamics of microbial communities during decomposition of carbon-13 labeled ryegrass fractions in soilSoil Science Society of America Journal200569123812472005SSASJ..69.1238M1:CAS:528:DC%2BD2MXmvV2lt7c%3D10.2136/sssaj2004.0289
EdgarRCHaasBJClementeJCQuinceCKnightRUCHIME improves sensitivity and speed of chimera detectionBioinformatics201127219422001:CAS:528:DC%2BC3MXhtVSiurvL21700674315004410.1093/bioinformatics/btr381
Vaz, A. B. et al. A multiscale study of fungal endophyte communities of the foliar endosphere of native rubber trees in Eastern Amazon. Scientific reports8 (2018).
Bailey, M. J., Lilley, A. K., Timms-Wilson, T. M. & Spencer-Phillips, P. T. N. Microbial ecology of aerial plant surfaces. (CABI, 2006).
NilssonRHA comprehensive, automatically updated fungal ITS sequence dataset for reference-based chimera control in environmental sequencing effortsMicrobes and environments20153014515025786896446292410.1264/jsme2.ME14121
StenströmENdobeNEJonssonMStenlidJMenkisARoot-associated fungi of healthy-looking Pinus sylvestris and Picea abies seedlings in Swedish forest nurseriesScandinavian Journal of Forest Research201429122110.1080/02827581.2013.844850
OchimaruTFukudaKChanges in fungal communities in evergreen broad-leaved forests across a gradient of urban to rural areas in Japan. This article is one of a selection of papers published in the Special Forum on Towards Sustainable Forestry—The Living Soil: Soil Biodiversity and Ecosystem FunctionCanadian Journal of Forest Research20073724725810.1139/X06-293
AquinoRCornejoFMPezoEHeymannEWDistribution and abundance of white-fronted spider monkeys, Ateles belzebuth (Atelidae), and threats to their survival in Peruvian AmazoniaFolia Primatologica20138411010.1159/000345549
Puente-SánchezFAguirreJParroVA novel conceptual approach to read-filtering in high-throughput amplicon sequencing studiesNucleic acids research201544e40e4026553806477020810.1093/nar/gkv1113
MillerMAA RESTful API for access to phylogenetic tools via the CIPRES science gatewayEvolutionary Bioinformatics201511431:CAS:528:DC%2BC1cXlsVKmtrg%3D10.4137/EBO.S21501258612104362911
Del Olmo-RuizMArnoldAECommunity structure of fern-affiliated endophytes in three neotropical forestsJournal of Tropical Ecology201733607310.1017/S0266467416000535
Oksanen, J. et al. Vegan: Community Ecology Package. R package version 2.0–2. http://CRAN.R-project.org/package=vegan (2017).
AllenTRMillarTBerchSMBerbeeMLCulturing and direct DNA extraction find different fungi from the same ericoid mycorrhizal rootsNew Phytologist20031602552721:CAS:528:DC%2BD3sXot1Wiur4%3D10.1046/j.1469-8137.2003.00885.x33873522
Mueller, G. M. Biodiversity of fungi: inventory and monitoring methods. (Elsevier, 2011).
Verma, V. C. & Gange, A. C. Advances in endophytic research. (Springer, 2014).
VazABFungal endophyte β-diversity associated with Myrtaceae species in an Andean Patagonian forest (Argentina) and an Atlantic forest (Brazil)Fungal Ecology20148283610.1016/j.funeco.2013.12.008
IhrmarkKNew primers to amplify the fungal ITS2 region–evaluation by 454-sequencing of artificial and natural communitiesFEMS Microbiology Ecology2012826666771:CAS:528:DC%2BC38XhvVaktL3P2273818610.1111/j.1574-6941.2012.01437.x
KatohKTohHRecent developments in the MAFFT multiple sequence alignment programBriefings in bioinformatics200892862981:CAS:528:DC%2BD1cXpt1artrs%3D1837231510.1093/bib/bbn013
Sadeghi, F., Samsampour, D., Seyahooei, M. A., Bagheri, A. & Soltani, J. Diversity and Spatiotemporal Distribution of Fungal Endophytes Associated with Citrus reticulata cv. Siyahoo. Current microbiology 1–11 (2019).
ConnellJHOn the role of natural enemies in preventing competitive exclusion in some marine animals and in rain forest treesDynamics of populations1971298312
SchochCLFinding needles in haystacks: linking scientific names, reference specimens and molecular data for FungiDatabase20142014bau06124980130407592810.1093/database/bau061
UnterseherMSpecies abundance distributions and richness estimations in fungal metagenomics–lessons learned from community ecologyMolecular Ecology2011202752852115591110.1111/j.1365-294X.2010.04948.x
RodriguesKatia FerreiraThe foliar fungal endophytes of the Amazonian palm Euterpe oleraceaMycologia199486337638510.1080/00275514.1994.12026423
JumpponenAJonesKLSeasonally dynamic fungal communities in the Quercus macrocarpa phyllosphere differ between urban and nonurban environmentsNew Phytologist20101864965131:STN:280:DC%2BC3c3nvVChtw%3D%3D2018091110.1111/j.1469-8137.2010.03197.x
JanzenDHHerbivores and the number of tree species in tropical forestsThe American Naturalist197010450152810.1086/282687
VincentJBWeiblenGDMayGHost associations and beta diversity of fungal endophyte communities in New Guinea rainforest treesMolecular Ecology2016258258411:STN:280:DC%2BC28vps1Cqtw%3D%3D2666190310.1111/mec.13510
GazisRChaverriPDiversity of fungal endophytes in leaves and stems of wild rubber trees (Hevea brasiliensis) in PeruFungal Ecology2010324025410.1016/j.funeco.2009.12.001
Espinosa-GarciaFJLangenheimJHThe endophytic fungal community in leaves of a coastal redwood population diversity and spatial patternsNew Phytologist1990116899710.1111/j.1469-8137.1990.tb00513.x
HigginsKLArnoldAEMiadlikowskaJSarvateSDLutzoniFPhylogenetic relationships, host affinity, and geographic structure of boreal and arctic endophytes from three major plant lineagesMolecular phylogenetics and evolution2007425435551:CAS:528:DC%2BD28Xht1CgsbnL1700542110.1016/j.ympev.2006.07.012
ChenHBoutrosPCVennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in RBMC bioinformatics20111221269502304165710.1186/1471-2105-12-35
YanDHigh-throughput eDNA monitoring of fungi to track functional recovery in ecological restorationBiological conservation201821711312010.1016/j.biocon.2017.10.035
BrownSPScraping the bottom of the barrel: are rare high throughput sequences artifacts?Fungal Ecology20151322122510.1016/j.funeco.2014.08.006
KolaříkováZRoot-associated fungal communities along a primary succession on a mine spoil: Distinct ecological guilds assemble differentlySoil Biology and Biochemistry201711314315210.1016/j.soilbio.2017.06.004
NascimentoTLBiodiversity of endophytic fungi in different leaf ages of Calotropis procera and their antimicrobial activityFungal Ecology201514798610.1016/j.funeco.2014.10.004
LeiteHACBacillus subtilis and Enterobacter cloacae endophytes from healthy Theobroma cacao L. trees can systemically colonize seedlings and promote growthApplied Microbiology and Biotechnology201397263926511:CAS:528:DC%2BC3sXjsFGms7g%3D2321267010.1007/s00253-012-4574-2
NguyenNHFUNGuild: an open annotation tool for parsing fungal community datasets by ecological guildFungal Ecology20162024124810.1016/j.funeco.2015.06.006
VujanovicVBrissonJA
ES LeBrun (48943_CR74) 2018; 32
Z Kolaříková (48943_CR73) 2017; 113
A Chao (48943_CR22) 2015; 6
R Lieberei (48943_CR25) 1985; 150
HAC Leite (48943_CR4) 2013; 97
E Stenström (48943_CR47) 2014; 29
JC Nekola (48943_CR68) 1999; 26
K Katoh (48943_CR55) 2008; 9
48943_CR16
R Lieberei (48943_CR24) 2007; 100
RH Nilsson (48943_CR43) 2015; 30
48943_CR59
C Monard (48943_CR61) 2013; 84
FJ Espinosa-Garcia (48943_CR7) 1990; 116
D Yan (48943_CR76) 2018; 217
TL Nascimento (48943_CR2) 2015; 14
TR Allen (48943_CR45) 2003; 160
H Chen (48943_CR70) 2011; 12
P Martínez-Álvarez (48943_CR5) 2016; 94
R Gazis (48943_CR11) 2015; 17
K Lüneberg (48943_CR75) 2019; 10
LJ Manley (48943_CR53) 2016; 27
A Chao (48943_CR63) 2014; 84
L Jost (48943_CR62) 2006; 113
JB Vincent (48943_CR20) 2016; 25
48943_CR44
R Gazis (48943_CR58) 2011; 20
M Hubbard (48943_CR6) 2014; 116
Katia Ferreira Rodrigues (48943_CR8) 1994; 86
PD Spanu (48943_CR30) 2017; 8
F Puente-Sánchez (48943_CR52) 2015; 44
E Matsumura (48943_CR38) 2013; 117
C Selin (48943_CR29) 2016; 7
SK McMahon (48943_CR67) 2005; 69
GJ Samuels (48943_CR13) 2006; 110
KL Higgins (48943_CR46) 2007; 42
JH Connell (48943_CR34) 1971; 298
K Clarke (48943_CR66) 1994; 2
RC Edgar (48943_CR54) 2011; 27
TS Suryanarayanan (48943_CR18) 2011; 20
SP Brown (48943_CR42) 2015; 13
DJ Ballhorn (48943_CR26) 2005; 31
R Lieberei (48943_CR32) 1996; 70
S Zeilinger (48943_CR28) 2015; 40
DS Hibbett (48943_CR40) 2011; 25
MA Miller (48943_CR56) 2015; 11
R Gazis (48943_CR15) 2010; 3
LG Nagy (48943_CR41) 2011; 191
M Unterseher (48943_CR71) 2011; 20
R Oono (48943_CR10) 2015; 119
DH Janzen (48943_CR33) 1970; 104
MJL Solis (48943_CR19) 2016; 57
R Aquino (48943_CR48) 2013; 84
NH Nguyen (48943_CR72) 2016; 20
AB Vaz (48943_CR69) 2014; 8
CA Hanson (48943_CR35) 2012; 10
HC Evans (48943_CR49) 2003; 2
CL Schoch (48943_CR57) 2014; 2014
CA Robles (48943_CR39) 2015; 45
48943_CR17
BA Bailey (48943_CR27) 2009; 113
K Ihrmark (48943_CR51) 2012; 82
48943_CR23
S Meaden (48943_CR12) 2016; 8
A Gure (48943_CR9) 2014; 8
48943_CR64
RE Hanada (48943_CR14) 2008; 112
A Jumpponen (48943_CR37) 2010; 186
48943_CR1
V Vujanovic (48943_CR31) 2002; 1
TJ White (48943_CR50) 1990; 18
T Ochimaru (48943_CR36) 2007; 37
M Del Olmo-Ruiz (48943_CR21) 2017; 33
48943_CR3
KL Higgins (48943_CR65) 2014; 8
48943_CR60
References_xml – volume: 20
  start-page: 913
  year: 2011
  ident: 48943_CR18
  publication-title: Biodiversity and Conservation
  doi: 10.1007/s10531-011-0004-5
  contributor:
    fullname: TS Suryanarayanan
– volume: 20
  start-page: 275
  year: 2011
  ident: 48943_CR71
  publication-title: Molecular Ecology
  doi: 10.1111/j.1365-294X.2010.04948.x
  contributor:
    fullname: M Unterseher
– volume: 104
  start-page: 501
  year: 1970
  ident: 48943_CR33
  publication-title: The American Naturalist
  doi: 10.1086/282687
  contributor:
    fullname: DH Janzen
– volume: 117
  start-page: 191
  year: 2013
  ident: 48943_CR38
  publication-title: Fungal biology
  doi: 10.1016/j.funbio.2013.01.007
  contributor:
    fullname: E Matsumura
– volume: 44
  start-page: e40
  year: 2015
  ident: 48943_CR52
  publication-title: Nucleic acids research
  doi: 10.1093/nar/gkv1113
  contributor:
    fullname: F Puente-Sánchez
– volume: 27
  start-page: 2194
  year: 2011
  ident: 48943_CR54
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btr381
  contributor:
    fullname: RC Edgar
– ident: 48943_CR64
– volume: 26
  start-page: 867
  year: 1999
  ident: 48943_CR68
  publication-title: Journal of Biogeography
  doi: 10.1046/j.1365-2699.1999.00305.x
  contributor:
    fullname: JC Nekola
– volume: 45
  start-page: 929
  year: 2015
  ident: 48943_CR39
  publication-title: Canadian Journal of Forest Research
  doi: 10.1139/cjfr-2014-0560
  contributor:
    fullname: CA Robles
– volume: 110
  start-page: 381
  year: 2006
  ident: 48943_CR13
  publication-title: mycological research
  doi: 10.1016/j.mycres.2006.01.009
  contributor:
    fullname: GJ Samuels
– volume: 298
  start-page: 312
  year: 1971
  ident: 48943_CR34
  publication-title: Dynamics of populations
  contributor:
    fullname: JH Connell
– volume: 8
  start-page: 1
  year: 2014
  ident: 48943_CR65
  publication-title: Fungal Ecology
  doi: 10.1016/j.funeco.2013.12.005
  contributor:
    fullname: KL Higgins
– volume: 217
  start-page: 113
  year: 2018
  ident: 48943_CR76
  publication-title: Biological conservation
  doi: 10.1016/j.biocon.2017.10.035
  contributor:
    fullname: D Yan
– volume: 20
  start-page: 3001
  year: 2011
  ident: 48943_CR58
  publication-title: Molecular Ecology
  doi: 10.1111/j.1365-294X.2011.05110.x
  contributor:
    fullname: R Gazis
– volume: 25
  start-page: 38
  year: 2011
  ident: 48943_CR40
  publication-title: Fungal biology reviews
  doi: 10.1016/j.fbr.2011.01.001
  contributor:
    fullname: DS Hibbett
– volume: 8
  start-page: 192
  year: 2017
  ident: 48943_CR30
  publication-title: Frontiers in plant science
  doi: 10.3389/fpls.2017.00192
  contributor:
    fullname: PD Spanu
– volume: 37
  start-page: 247
  year: 2007
  ident: 48943_CR36
  publication-title: Canadian Journal of Forest Research
  doi: 10.1139/X06-293
  contributor:
    fullname: T Ochimaru
– volume: 12
  year: 2011
  ident: 48943_CR70
  publication-title: BMC bioinformatics
  doi: 10.1186/1471-2105-12-35
  contributor:
    fullname: H Chen
– volume: 86
  start-page: 376
  issue: 3
  year: 1994
  ident: 48943_CR8
  publication-title: Mycologia
  doi: 10.1080/00275514.1994.12026423
  contributor:
    fullname: Katia Ferreira Rodrigues
– volume: 2014
  start-page: bau061
  year: 2014
  ident: 48943_CR57
  publication-title: Database
  doi: 10.1093/database/bau061
  contributor:
    fullname: CL Schoch
– volume: 2
  start-page: 149
  year: 2003
  ident: 48943_CR49
  publication-title: Mycological Progress
  doi: 10.1007/s11557-006-0053-4
  contributor:
    fullname: HC Evans
– volume: 6
  start-page: 873
  year: 2015
  ident: 48943_CR22
  publication-title: Methods in Ecology and Evolution
  doi: 10.1111/2041-210X.12349
  contributor:
    fullname: A Chao
– volume: 14
  start-page: 79
  year: 2015
  ident: 48943_CR2
  publication-title: Fungal Ecology
  doi: 10.1016/j.funeco.2014.10.004
  contributor:
    fullname: TL Nascimento
– volume: 2
  start-page: 117
  year: 1994
  ident: 48943_CR66
  publication-title: Change in marine communities
  contributor:
    fullname: K Clarke
– volume: 113
  start-page: 1365
  year: 2009
  ident: 48943_CR27
  publication-title: Mycological research
  doi: 10.1016/j.mycres.2009.09.004
  contributor:
    fullname: BA Bailey
– volume: 29
  start-page: 12
  year: 2014
  ident: 48943_CR47
  publication-title: Scandinavian Journal of Forest Research
  doi: 10.1080/02827581.2013.844850
  contributor:
    fullname: E Stenström
– volume: 94
  start-page: 1
  year: 2016
  ident: 48943_CR5
  publication-title: Biological Control
  doi: 10.1016/j.biocontrol.2015.11.011
  contributor:
    fullname: P Martínez-Álvarez
– volume: 30
  start-page: 145
  year: 2015
  ident: 48943_CR43
  publication-title: Microbes and environments
  doi: 10.1264/jsme2.ME14121
  contributor:
    fullname: RH Nilsson
– volume: 11
  start-page: 43
  year: 2015
  ident: 48943_CR56
  publication-title: Evolutionary Bioinformatics
  doi: 10.4137/EBO.S21501
  contributor:
    fullname: MA Miller
– volume: 8
  start-page: 3489
  year: 2014
  ident: 48943_CR9
  publication-title: African Journal of Microbiology Research
  doi: 10.5897/AJMR2013.6446
  contributor:
    fullname: A Gure
– volume: 113
  start-page: 363
  year: 2006
  ident: 48943_CR62
  publication-title: Oikos
  doi: 10.1111/j.2006.0030-1299.14714.x
  contributor:
    fullname: L Jost
– volume: 119
  start-page: 917
  year: 2015
  ident: 48943_CR10
  publication-title: Fungal biology
  doi: 10.1016/j.funbio.2015.07.003
  contributor:
    fullname: R Oono
– ident: 48943_CR60
  doi: 10.4137/EBO.S653
– volume: 40
  start-page: 182
  year: 2015
  ident: 48943_CR28
  publication-title: FEMS microbiology reviews
  doi: 10.1093/femsre/fuv045
  contributor:
    fullname: S Zeilinger
– volume: 100
  start-page: 1125
  year: 2007
  ident: 48943_CR24
  publication-title: Annals of botany
  doi: 10.1093/aob/mcm133
  contributor:
    fullname: R Lieberei
– volume: 18
  start-page: 315
  year: 1990
  ident: 48943_CR50
  publication-title: PCR protocols: a guide to methods and applications
  contributor:
    fullname: TJ White
– volume: 69
  start-page: 1238
  year: 2005
  ident: 48943_CR67
  publication-title: Soil Science Society of America Journal
  doi: 10.2136/sssaj2004.0289
  contributor:
    fullname: SK McMahon
– volume: 10
  start-page: 1220
  year: 2019
  ident: 48943_CR75
  publication-title: Frontiers in Microbiology
  doi: 10.3389/fmicb.2019.01220
  contributor:
    fullname: K Lüneberg
– volume: 8
  start-page: 649
  year: 2016
  ident: 48943_CR12
  publication-title: Environmental microbiology reports
  doi: 10.1111/1758-2229.12418
  contributor:
    fullname: S Meaden
– ident: 48943_CR17
  doi: 10.1079/9781845930615.0000
– volume: 33
  start-page: 60
  year: 2017
  ident: 48943_CR21
  publication-title: Journal of Tropical Ecology
  doi: 10.1017/S0266467416000535
  contributor:
    fullname: M Del Olmo-Ruiz
– volume: 20
  start-page: 241
  year: 2016
  ident: 48943_CR72
  publication-title: Fungal Ecology
  doi: 10.1016/j.funeco.2015.06.006
  contributor:
    fullname: NH Nguyen
– volume: 42
  start-page: 543
  year: 2007
  ident: 48943_CR46
  publication-title: Molecular phylogenetics and evolution
  doi: 10.1016/j.ympev.2006.07.012
  contributor:
    fullname: KL Higgins
– volume: 25
  start-page: 825
  year: 2016
  ident: 48943_CR20
  publication-title: Molecular Ecology
  doi: 10.1111/mec.13510
  contributor:
    fullname: JB Vincent
– volume: 8
  start-page: 28
  year: 2014
  ident: 48943_CR69
  publication-title: Fungal Ecology
  doi: 10.1016/j.funeco.2013.12.008
  contributor:
    fullname: AB Vaz
– volume: 31
  start-page: 1445
  year: 2005
  ident: 48943_CR26
  publication-title: Journal of chemical ecology
  doi: 10.1007/s10886-005-5791-2
  contributor:
    fullname: DJ Ballhorn
– volume: 1
  start-page: 147
  year: 2002
  ident: 48943_CR31
  publication-title: Mycological Progress
  doi: 10.1007/s11557-006-0014-y
  contributor:
    fullname: V Vujanovic
– volume: 10
  start-page: 497
  year: 2012
  ident: 48943_CR35
  publication-title: Nature Reviews Microbiology
  doi: 10.1038/nrmicro2795
  contributor:
    fullname: CA Hanson
– ident: 48943_CR23
– volume: 186
  start-page: 496
  year: 2010
  ident: 48943_CR37
  publication-title: New Phytologist
  doi: 10.1111/j.1469-8137.2010.03197.x
  contributor:
    fullname: A Jumpponen
– ident: 48943_CR44
  doi: 10.1201/9781315119496
– volume: 84
  start-page: 45
  year: 2014
  ident: 48943_CR63
  publication-title: Ecological Monographs
  doi: 10.1890/13-0133.1
  contributor:
    fullname: A Chao
– volume: 32
  start-page: 72
  year: 2018
  ident: 48943_CR74
  publication-title: Fungal ecology
  doi: 10.1016/j.funeco.2017.12.003
  contributor:
    fullname: ES LeBrun
– ident: 48943_CR3
  doi: 10.5897/AJB2012.2958
– volume: 70
  start-page: 230
  year: 1996
  ident: 48943_CR32
  publication-title: Journal of applied botany
  contributor:
    fullname: R Lieberei
– volume: 191
  start-page: 789
  year: 2011
  ident: 48943_CR41
  publication-title: New Phytologist
  doi: 10.1111/j.1469-8137.2011.03707.x
  contributor:
    fullname: LG Nagy
– ident: 48943_CR1
  doi: 10.1007/978-81-322-1575-2
– ident: 48943_CR16
  doi: 10.1007/s00284-019-01632-9
– ident: 48943_CR59
  doi: 10.1038/s41598-018-34619-w
– volume: 97
  start-page: 2639
  year: 2013
  ident: 48943_CR4
  publication-title: Applied Microbiology and Biotechnology
  doi: 10.1007/s00253-012-4574-2
  contributor:
    fullname: HAC Leite
– volume: 116
  start-page: 89
  year: 1990
  ident: 48943_CR7
  publication-title: New Phytologist
  doi: 10.1111/j.1469-8137.1990.tb00513.x
  contributor:
    fullname: FJ Espinosa-Garcia
– volume: 17
  start-page: 18
  year: 2015
  ident: 48943_CR11
  publication-title: Fungal Ecology
  doi: 10.1016/j.funeco.2015.04.001
  contributor:
    fullname: R Gazis
– volume: 57
  start-page: 96
  year: 2016
  ident: 48943_CR19
  publication-title: Mycoscience
  doi: 10.1016/j.myc.2015.10.002
  contributor:
    fullname: MJL Solis
– volume: 150
  start-page: 49
  year: 1985
  ident: 48943_CR25
  publication-title: Plant Systematics and Evolution
  doi: 10.1007/BF00985567
  contributor:
    fullname: R Lieberei
– volume: 84
  start-page: 165
  year: 2013
  ident: 48943_CR61
  publication-title: FEMS Microbiology Ecology
  doi: 10.1111/1574-6941.12046
  contributor:
    fullname: C Monard
– volume: 9
  start-page: 286
  year: 2008
  ident: 48943_CR55
  publication-title: Briefings in bioinformatics
  doi: 10.1093/bib/bbn013
  contributor:
    fullname: K Katoh
– volume: 3
  start-page: 240
  year: 2010
  ident: 48943_CR15
  publication-title: Fungal Ecology
  doi: 10.1016/j.funeco.2009.12.001
  contributor:
    fullname: R Gazis
– volume: 84
  start-page: 1
  year: 2013
  ident: 48943_CR48
  publication-title: Folia Primatologica
  doi: 10.1159/000345549
  contributor:
    fullname: R Aquino
– volume: 113
  start-page: 143
  year: 2017
  ident: 48943_CR73
  publication-title: Soil Biology and Biochemistry
  doi: 10.1016/j.soilbio.2017.06.004
  contributor:
    fullname: Z Kolaříková
– volume: 13
  start-page: 221
  year: 2015
  ident: 48943_CR42
  publication-title: Fungal Ecology
  doi: 10.1016/j.funeco.2014.08.006
  contributor:
    fullname: SP Brown
– volume: 82
  start-page: 666
  year: 2012
  ident: 48943_CR51
  publication-title: FEMS Microbiology Ecology
  doi: 10.1111/j.1574-6941.2012.01437.x
  contributor:
    fullname: K Ihrmark
– volume: 112
  start-page: 1335
  year: 2008
  ident: 48943_CR14
  publication-title: mycological research
  doi: 10.1016/j.mycres.2008.06.022
  contributor:
    fullname: RE Hanada
– volume: 160
  start-page: 255
  year: 2003
  ident: 48943_CR45
  publication-title: New Phytologist
  doi: 10.1046/j.1469-8137.2003.00885.x
  contributor:
    fullname: TR Allen
– volume: 116
  start-page: 109
  year: 2014
  ident: 48943_CR6
  publication-title: Journal of applied microbiology
  doi: 10.1111/jam.12311
  contributor:
    fullname: M Hubbard
– volume: 7
  start-page: 600
  year: 2016
  ident: 48943_CR29
  publication-title: Frontiers in Microbiology
  doi: 10.3389/fmicb.2016.00600
  contributor:
    fullname: C Selin
– volume: 27
  start-page: 125
  year: 2016
  ident: 48943_CR53
  publication-title: Journal of biomolecular techniques: JBT
  doi: 10.7171/jbt.16-2704-002
  contributor:
    fullname: LJ Manley
SSID ssj0000529419
Score 2.4550629
Snippet Many aspects of the dynamics of tropical fungal endophyte communities are poorly known, including the influence of host taxonomy, host life stage, host...
Abstract Many aspects of the dynamics of tropical fungal endophyte communities are poorly known, including the influence of host taxonomy, host life stage,...
SourceID pubmedcentral
proquest
crossref
pubmed
springer
SourceType Open Access Repository
Aggregation Database
Index Database
Publisher
StartPage 12685
SubjectTerms 631/158/2450
631/449/2676
Biodiversity
Brazil
Comparative Genomic Hybridization
DNA, Fungal - chemistry
DNA, Fungal - metabolism
Endophytes
Fungi - genetics
Fungi - isolation & purification
Genera
Hevea
Hevea - growth & development
Hevea - microbiology
Humanities and Social Sciences
Micrandra
multidisciplinary
Mycobiome
Rubber
Sampling
Science
Science (multidisciplinary)
Seedlings
Seedlings - microbiology
Sequence Analysis, DNA
Taxonomy
SummonAdditionalLinks – databaseName: ProQuest Central
  dbid: BENPR
  link: http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwfV1Lb9QwEB5BKyQuVXmnFGQkbmB17dhOcqoKalUhUSFEpd6i2J4tlWjSNltV5R_xL5lxsrtaChzzsJN4xv4mnplvAN46wvASI8qILpfGTaJsSlQyMPypplQ2kSR9PnKHx-bTiT0ZN9z6MaxyviamhTp2gffId5impbKcGLp7cSm5ahR7V8cSGvdhXSvDbtr1D_tHX74udlnYj2VUNWbLTPJypyfE4qwyVUnD3ONSryLSHTPzbrTkHy7ThEQHm7AxmpBib5D5I7iH7WN4MBSVvH0Cv4awujTiopsKZmoW2MaOBpRaiDCkhDCRqmD-JkKIKOIydoi6JovxFEXTi65F7oKMRBGvUgQHHxIWEq78rc9batTjuf9B7Xtx1orZTSf2zpuftHI0reAML47xEaeJ7PopHB_sf_t4KMeCDDKQXTaTroll8FM7idarRueBJII68D-Pja6KXsWyRBsxx1Kji4S_3hTBoK4ihmjyZ7DW0pu_AKGDmxaezk59MOz91N4a5UlXNDJ5dgbv5kKpLwbejTr5y_OyHkRYkwjrJMJaZ7A9l1s9zsG-XmpMBm8Wl2n2sEukabG7Tvcwn45yRQbPBzEvHpfTnyJX78qgWFGAxQ3MzL16pT37nhi6XcH5yzaD93NVWb7Wv79i6_9f8RIealZb9mbl27A2u7rGV2QRzfzrUe1_A7l9EGk
  priority: 102
  providerName: ProQuest
– databaseName: Scholars Portal Open Access Journals
  dbid: M48
  link: http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV1Lb9QwEB5VrUC9oPIOLchI3CBQO7aTHCpUIaoKqZxYqbcotmdLpTaBzVbt8o_4l8w4yVZLlwvHPPxIZuxvrJn5BuCNJQwvMGAa0GaptvshrQuUqWf4k3UhTSRJOvlqjyf6y6k53YCx3NHwA7u1RzuuJzWZXby_-bn4SAv-oE8ZLz50BEKcKCbLVDOdeEpb8pbSmWaNPxnM_Z7rW5ValkPuzPqm23A_oyMCl21ahao79ufdMMq_fKkRoo524MFgW4rDXhkewgY2j-BeX21y8Rh-9_F2URSinQqmcBbYhJb-NLUQvs8VYYZVwcROBB1BhNugIuqaTMkzFHUn2ga5C7IeRZjF0A6-JJAkwFnX54IadXjpLqh9J84bMb9uxeFl_Yu2lLoRnPrFwT_iLLJgP4HJ0edvn47ToVJD6slgm6e2DoV3U7MfjJO1ynxWGlSeD0Mm2DI4GYoCTcAMC4U2EDA7nXuNqgzog86ewmZDM38OQnk7zR3dnTqv2S2qnNHSkRIpZFbtBN6OQql-9IQcVXSkZ0XVS7MiaVZRmpVKYG-UWzXqVsWMP6XhHOMEXi8f07JiX0ndYHsV32GiHWnzBJ71Yl4ON-pHAvmKAixfYMru1SfN-fdI3W1zTmw2CbwbVeV2Wv_-ihf_PdAubCtWbvaAZXuwOZ9d4UuyoubuVVwafwBT-R-b
  priority: 102
  providerName: Scholars Portal
– databaseName: Springer Nature Open Access Journals
  dbid: C6C
  link: http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwlV1NT9wwELUQCIlLBW2hAVq5Um-txfozzhGtQKhSeyoStyi2ZwGpJIgsqug_6r_sjJNdtEAPPSaxHccz9htnZp4Z--QQwz0kEAmcFsZNkmg8SBEJ_mTjpc0kSd--u7Nz8_XCXow0OZQLs-K_1_6oR4ChJDBZCUNU4QKX2w0r3YQ0eOqmy_8p5LEyshrzYl6uuoo9zwzK53GRT5yjGXNOt9mr0Vjkx4N0d9gatK_Z5nB85MMb9mcIoMtjy7sZJ05mDm3qcOiwBo9D8gdRpnJiakIsSDw9Rglh02gbXgJvet61QE2gOcjTXY7VoEtEPUSQl9p8wEo93ISfWL_n1y2f_-r48U3zG9eIpuWUy0XRPPwy01q_ZeenJz-mZ2I8ekFEtMDmwjXJxzCzk2SDbJSOurKgIu1ubHJVCjJ5DzaBBq_AJUTaYMpoQFUJYjJ6l6232PN3jKvoZmXAu7MQDfk5VbBGBtQKBUSTXbDPC6HUtwPDRp0949rXgwhrFGGdRVirgh0u5FaPs62vicKnspQ0XLCPy8c4T8j50bTQ3ecyxJwjXVmwvUHMy9dp3BPSOV0FK1cUYFmAOLhXn7TXV5mL25WUqWwL9mWhKo_d-vdX7P9f8QO2pUiNyY-lD9n6_O4e3qMtNA8f8iT4C088CAw
  priority: 102
  providerName: Springer Nature
Title Exploration of stem endophytic communities revealed developmental stage as one of the drivers of fungal endophytic community assemblages in two Amazonian hardwood genera
URI https://link.springer.com/article/10.1038/s41598-019-48943-2
https://www.ncbi.nlm.nih.gov/pubmed/31481728
https://www.proquest.com/docview/2283958022
https://search.proquest.com/docview/2284564167
https://pubmed.ncbi.nlm.nih.gov/PMC6722055
Volume 9
hasFullText 1
inHoldings 1
isFullTextHit
isPrint
link http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV1La9wwEB6SlEIvpe84TRcVemudXetl-ZguCaGwIZQG9masx6YLWTvEG0ryj_ovOyOvN92mvfRisC3Jsmbkb-SZ-QTwQSOGm-BD6oMWqdQjn1YmZKkj-Msqk6lIkjQ51Sfn8stUTbdA9bkwMWjf2flBfbk4qOffY2zl1cIN-zix4dlkrHNKD1XDbdjOhfhtid4RevNCZsUqQWYkzLBFkKJEsqxIJdGNp7SFjcB1AO3NtIlHD4zMh7GSfzhMIw4dP4OnKwOSHXYdfQ5boX4Bj7stJW9fws8uqC6ON2tmjHiaWah9g8OJNZjrEkKIRpURexPig2f-PnIIm0Z78SKwqmVNHagJNBGZv47xG3SKSIio8rc2b7FSGxb2Euu3bF6z5Y-GHS6qO_xuVDWj_C6K8GEXker6FZwfH30bn6Sr7RhSh1bZMtWVN87O1Mgrm1VcOFGowB2teJTXhbeZNyYoH0QwPGiP6Gtl7mTghQ_OS_Eadmrs-S4w7vQst3h1Zp0k3ye3SmYWNYUHos5O4GMvlPKqY90oo7dcmLKTZonSLKM0S57Afi-3cjUD25JofQpFicQJvF_fxrlDDpGqDs1NLENsOpnOE3jTiXn9uF4_Esg3FGBdgHi5N--gukZ-7pV6JvCpV5X7bv37Lfb--0Fv4Qkn5SY3l9iHneX1TXiHptLSDnCCTPMBPPp8dHr2Fc_GejyIvx3wOJFmEKfOL_lAHSU
link.rule.ids 230,315,733,786,790,870,891,12083,21416,24346,27955,27956,31752,31753,33777,33778,41153,42222,43343,43838,51609,53825,53827,74100,74657
linkProvider National Library of Medicine
linkToHtml http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwfV1Lb9QwEB7BVgguiDeBAkbiBlY3TuI4J1RQqwXaFUKt1JsV27OlEk1KsxUq_4h_yYyT3dVS4JiHnceM_Y09M98AvNKE4QYDyoA6k7keB1kbTKVn-EtrkxaRJGl_qieH-cej4mjYcOuGsMrFnBgn6tB63iPfYpqWquDE0Ldn3yVXjWLv6lBC4zpsMOWmGcHGu53p5y_LXRb2Y-VpNWTLjDOz1RFicVZZWsmcucelWkekK2bm1WjJP1ymEYl278DtwYQU273M78I1bO7Bjb6o5OV9-NWH1cU_LtqZYKZmgU1o6YdSC-H7lBAmUhXM30QIEURYxQ5R12QxHqOoO9E2yF2QkSjCeYzg4EPCQsKVv_V5SY06PHXfqH0nThox_9GK7dP6J80cdSM4w4tjfMRxJLt-AIe7OwfvJ3IoyCA92WVzqetgvJsV41C4tFaZJ4mg8rzmKYKugkuDMVgEzNAo1IHw1-Wlz1FVAX3Is4cwaujNH4NQXs9KR2dnzufs_VSuyFNHuqKQybMTeL0Qij3reTds9JdnxvYitCRCG0VoVQKbC7nZYQx2dqUxCbxcXqbRwy6RusH2It7DfDqpLhN41It5-biMVopcvSuBck0BljcwM_f6lebka2To1iXnLxcJvFmoyuq1_v0VT_7_FS_g5uRgf8_ufZh-egq3FKswe7ayTRjNzy_wGVlHc_d8GAK_AcIKE18
linkToPdf http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwfV1Lb9QwEB5BEagXxJtAASNxA2s3TuI4J1QBq_KqOFBpb1ZsT0olmrTNVqj8I_4lM052V0uBYxLbiTMTf-PMzDcALzRhuMGAMqDOZK6nQdYGU-kZ_tLapEUkSfq8r_cO8g_zYj7GP_VjWOVyTYwLdeg8_yOfME1LVXBi6KQZwyK-vJ29PjmVXEGKPa1jOY2rcI1QcsplHMp5ufrfwh6tPK3GvJlpZiY9YRfnl6WVzJmFXKpNbLpkcF6Om_zDeRoxaXYLbo7GpNgdpH8brmB7B64P5SUv7sKvIcAuvnvRNYI5mwW2oaNXSz2EH5JDmFJVMJMTYUUQYR1FREOT7XiIou5F1yIPQeaiCGcxloMPCRUJYf425gV16vHYfaf-vThqxeJHJ3aP65-0htSt4FwvjvYRh5H2-h4czN59fbMnx9IM0pOFtpC6Dsa7ppiGwqW1yjzJBpXn3U8RdBVcGozBImCGRqEOhMQuL32OqgroQ57dh62WnvwhCOV1Uzo62zifsx9UuSJPHWmNQqbRTuDlUij2ZGDgsNFznhk7iNCSCG0UoVUJ7CzlZsevsbdr3Ung-eoyfUfsHKlb7M5jG2bWSXWZwINBzKvbZbRn5DpeCZQbCrBqwBzdm1fao2-Rq1uXnMlcJPBqqSrrx_r3LB79fxbP4Abpvv30fv_jY9hWrMHs4sp2YGtxdo5PyExauKdR_38Dl-UWHA
openUrl ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Exploration+of+stem+endophytic+communities+revealed+developmental+stage+as+one+of+the+drivers+of+fungal+endophytic+community+assemblages+in+two+Amazonian+hardwood+genera&rft.jtitle=Scientific+reports&rft.au=Skaltsas%2C+Demetra+N.&rft.au=Badotti%2C+Fernanda&rft.au=Vaz%2C+Aline+Bruna+Martins&rft.au=Silva%2C+Felipe+Ferreira+da&rft.date=2019-09-03&rft.pub=Nature+Publishing+Group+UK&rft.eissn=2045-2322&rft.volume=9&rft_id=info:doi/10.1038%2Fs41598-019-48943-2&rft_id=info%3Apmid%2F31481728&rft.externalDBID=PMC6722055
thumbnail_l http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=2045-2322&client=summon
thumbnail_m http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=2045-2322&client=summon
thumbnail_s http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=2045-2322&client=summon