Expanded inverted repeat region with large scale inversion in the first complete plastid genome sequence of Plantago ovata

Plantago ovata (Plantaginaceae) is an economically and medicinally important species, however, least is known about its genomics and evolution. Here, we report the first complete plastome genome of P. ovata and comparison with previously published genomes of related species from Plantaginaceae. The...

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Published inScientific reports Vol. 10; no. 1; p. 3881
Main Authors Asaf, Sajjad, Khan, Abdul Latif, Lubna, khan, Adil, Khan, Arif, Khan, Gulzar, Lee, In-Jung, Al-Harrasi, Ahmed
Format Journal Article
LanguageEnglish
Published London Nature Publishing Group UK 03.03.2020
Nature Publishing Group
Subjects
45
45/23
631/208/212/748
631/449/2491
Divergence
Evolution, Molecular
Genes
Genome, Plant - genetics
Genomes
Genomics
Humanities and Social Sciences
Inverted repeat
Inverted Repeat Sequences - genetics
MatK gene
Medicinal plants
Microsatellites
multidisciplinary
Nucleotide sequence
Phylogenetics
Phylogeny
Plantaginaceae
Plantago - cytology
Plantago - genetics
Plantago ovata
Plastids - genetics
RbcL gene
rRNA
Science
Science (multidisciplinary)
Species
tRNA
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Abstract Plantago ovata (Plantaginaceae) is an economically and medicinally important species, however, least is known about its genomics and evolution. Here, we report the first complete plastome genome of P. ovata and comparison with previously published genomes of related species from Plantaginaceae. The results revealed that P. ovata plastome size was 162,116 bp and that it had typical quadripartite structure containing a large single copy region of 82,084 bp and small single copy region of 5,272 bp. The genome has a markedly higher inverted repeat (IR) size of 37.4 kb, suggesting large-scale inversion of 13.8 kb within the expanded IR regions. In addition, the P. ovata plastome contains 149 different genes, including 43 tRNA, 8 rRNA, and 98 protein-coding genes. The analysis revealed 139 microsatellites, of which 71 were in the non-coding regions. Approximately 32 forward, 34 tandem, and 17 palindromic repeats were detected. The complete genome sequences, 72 shared genes, matK gene, and rbcL gene from related species generated the same phylogenetic signals, and phylogenetic analysis revealed that P. ovata formed a single clade with P. maritima and P. media . The divergence time estimation as employed in BEAST revealed that P. ovata diverged from P. maritima and P. media about 11.0 million years ago (Mya; 95% highest posterior density, 10.06–12.25 Mya). In conclusion, P . ovata had significant variation in the IR region, suggesting a more stable P . ovata plastome genome than that of other Plantaginaceae species.
AbstractList Plantago ovata (Plantaginaceae) is an economically and medicinally important species, however, least is known about its genomics and evolution. Here, we report the first complete plastome genome of P. ovata and comparison with previously published genomes of related species from Plantaginaceae. The results revealed that P. ovata plastome size was 162,116 bp and that it had typical quadripartite structure containing a large single copy region of 82,084 bp and small single copy region of 5,272 bp. The genome has a markedly higher inverted repeat (IR) size of 37.4 kb, suggesting large-scale inversion of 13.8 kb within the expanded IR regions. In addition, the P. ovata plastome contains 149 different genes, including 43 tRNA, 8 rRNA, and 98 protein-coding genes. The analysis revealed 139 microsatellites, of which 71 were in the non-coding regions. Approximately 32 forward, 34 tandem, and 17 palindromic repeats were detected. The complete genome sequences, 72 shared genes, matK gene, and rbcL gene from related species generated the same phylogenetic signals, and phylogenetic analysis revealed that P. ovata formed a single clade with P. maritima and P. media. The divergence time estimation as employed in BEAST revealed that P. ovata diverged from P. maritima and P. media about 11.0 million years ago (Mya; 95% highest posterior density, 10.06-12.25 Mya). In conclusion, P. ovata had significant variation in the IR region, suggesting a more stable P. ovata plastome genome than that of other Plantaginaceae species.Plantago ovata (Plantaginaceae) is an economically and medicinally important species, however, least is known about its genomics and evolution. Here, we report the first complete plastome genome of P. ovata and comparison with previously published genomes of related species from Plantaginaceae. The results revealed that P. ovata plastome size was 162,116 bp and that it had typical quadripartite structure containing a large single copy region of 82,084 bp and small single copy region of 5,272 bp. The genome has a markedly higher inverted repeat (IR) size of 37.4 kb, suggesting large-scale inversion of 13.8 kb within the expanded IR regions. In addition, the P. ovata plastome contains 149 different genes, including 43 tRNA, 8 rRNA, and 98 protein-coding genes. The analysis revealed 139 microsatellites, of which 71 were in the non-coding regions. Approximately 32 forward, 34 tandem, and 17 palindromic repeats were detected. The complete genome sequences, 72 shared genes, matK gene, and rbcL gene from related species generated the same phylogenetic signals, and phylogenetic analysis revealed that P. ovata formed a single clade with P. maritima and P. media. The divergence time estimation as employed in BEAST revealed that P. ovata diverged from P. maritima and P. media about 11.0 million years ago (Mya; 95% highest posterior density, 10.06-12.25 Mya). In conclusion, P. ovata had significant variation in the IR region, suggesting a more stable P. ovata plastome genome than that of other Plantaginaceae species.
Plantago ovata (Plantaginaceae) is an economically and medicinally important species, however, least is known about its genomics and evolution. Here, we report the first complete plastome genome of P. ovata and comparison with previously published genomes of related species from Plantaginaceae. The results revealed that P. ovata plastome size was 162,116 bp and that it had typical quadripartite structure containing a large single copy region of 82,084 bp and small single copy region of 5,272 bp. The genome has a markedly higher inverted repeat (IR) size of 37.4 kb, suggesting large-scale inversion of 13.8 kb within the expanded IR regions. In addition, the P. ovata plastome contains 149 different genes, including 43 tRNA, 8 rRNA, and 98 protein-coding genes. The analysis revealed 139 microsatellites, of which 71 were in the non-coding regions. Approximately 32 forward, 34 tandem, and 17 palindromic repeats were detected. The complete genome sequences, 72 shared genes, matK gene, and rbcL gene from related species generated the same phylogenetic signals, and phylogenetic analysis revealed that P. ovata formed a single clade with P. maritima and P. media . The divergence time estimation as employed in BEAST revealed that P. ovata diverged from P. maritima and P. media about 11.0 million years ago (Mya; 95% highest posterior density, 10.06–12.25 Mya). In conclusion, P . ovata had significant variation in the IR region, suggesting a more stable P . ovata plastome genome than that of other Plantaginaceae species.
Plantago ovata (Plantaginaceae) is an economically and medicinally important species, however, least is known about its genomics and evolution. Here, we report the first complete plastome genome of P. ovata and comparison with previously published genomes of related species from Plantaginaceae. The results revealed that P. ovata plastome size was 162,116 bp and that it had typical quadripartite structure containing a large single copy region of 82,084 bp and small single copy region of 5,272 bp. The genome has a markedly higher inverted repeat (IR) size of 37.4 kb, suggesting large-scale inversion of 13.8 kb within the expanded IR regions. In addition, the P. ovata plastome contains 149 different genes, including 43 tRNA, 8 rRNA, and 98 protein-coding genes. The analysis revealed 139 microsatellites, of which 71 were in the non-coding regions. Approximately 32 forward, 34 tandem, and 17 palindromic repeats were detected. The complete genome sequences, 72 shared genes, matK gene, and rbcL gene from related species generated the same phylogenetic signals, and phylogenetic analysis revealed that P. ovata formed a single clade with P. maritima and P. media. The divergence time estimation as employed in BEAST revealed that P. ovata diverged from P. maritima and P. media about 11.0 million years ago (Mya; 95% highest posterior density, 10.06-12.25 Mya). In conclusion, P. ovata had significant variation in the IR region, suggesting a more stable P. ovata plastome genome than that of other Plantaginaceae species.
ArticleNumber 3881
Author Al-Harrasi, Ahmed
khan, Adil
Khan, Abdul Latif
Khan, Arif
Asaf, Sajjad
Lubna
Khan, Gulzar
Lee, In-Jung
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BackLink https://www.ncbi.nlm.nih.gov/pubmed/32127603$$D View this record in MEDLINE/PubMed
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Cites_doi 10.1093/bioinformatics/bts199
10.1093/bioinformatics/bth352
10.1111/j.1365-313X.2005.02533.x
10.1371/journal.pone.0036869
10.1093/molbev/msn083
10.4081/eb.2010.e3
10.5511/plantbiotechnology.27.297
10.4238/vol8-4gmr583
10.1371/journal.pone.0079685
10.3732/ajb.1400398
10.1186/1471-2229-10-93
10.1079/PGR200582
10.1186/1471-2229-7-57
10.1093/nar/29.22.4633
10.1111/j.1365-313X.2006.02673.x
10.1093/molbev/mst010
10.1186/1471-2148-8-36
10.1111/j.1469-8137.2011.04003.x
10.1038/s41598-018-20189-4
10.1046/j.1095-8339.2002.00070.x
10.1093/molbev/msm036
10.1093/nar/27.2.573
10.1093/gbe/evs021
10.1093/ve/vey016
10.1186/s12862-014-0224-x
10.1111/jbi.13525
10.1007/s00294-007-0161-y
10.1093/gbe/evq036
10.1038/nbt.1860
10.3389/fpls.2017.00304
10.1111/j.1467-7652.2010.00558.x
10.1111/j.1095-8339.2012.01303.x
10.1093/oxfordjournals.molbev.a025808
10.1371/journal.pone.0057607
10.1007/s11103-011-9762-4
10.1186/s12870-018-1249-x
10.1016/j.ympev.2008.12.026
10.1038/s41598-017-07891-5
10.1098/rstb.1993.0020
10.3389/fpls.2016.00843
10.1093/nar/gki366
10.1093/nar/gkh458
10.1371/journal.pone.0020596
10.1146/annurev.pp.41.060190.001533
10.1093/gbe/evt042
10.1007/s11103-005-8882-0
10.1111/j.1095-8339.2012.01311.x
10.1093/aob/mcl017
10.1111/jse.12421
10.1371/journal.pone.0182281
10.1186/1471-2164-8-174
10.1016/j.plantsci.2012.04.001
10.3732/ajb.1100335
10.1016/S0960-9822(01)00675-3
10.1371/journal.pone.0200104
10.1371/journal.pone.0187199
10.1371/journal.pone.0129347
10.1111/j.1365-294X.2007.03585.x
10.1038/srep13957
10.1093/molbev/msh147
10.1007/BF00039388
10.1093/sysbio/syy032
10.1016/B978-0-12-715007-9.50009-8
10.1093/dnares/6.5.283
10.1007/BF00282645
10.1186/1471-2148-10-352
10.1186/1471-2148-9-130
10.1073/pnas.92.17.7759
10.1093/bioinformatics/btg180
10.1093/molbev/msi173
10.3732/ajb.94.3.302
10.1093/molbev/msl089
10.1093/bib/bbn017
10.2307/2656749
10.1360/02yc0120
10.1371/journal.pone.0162268
10.1007/s11295-016-1051-6
10.1093/dnares/dsp025
10.1016/0168-9525(89)90111-X
10.1093/bioinformatics/btp187
10.1371/journal.pone.0031468
10.1073/pnas.0907801107
10.1111/nph.13743
10.3103/S1068367416010055
10.1371/journal.pone.0118019
10.1007/BF01731581
10.1007/BF02173220
10.1007/BF00039430
10.1073/pnas.0709121104
10.1007/s10709-018-0037-8
10.1079/9780851999043.0081
10.1007/s00239-008-9086-4
10.1101/gr.111955.110
10.1079/9780851999043.0000
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References Dhar, Kaul, Sareen, Koul (CR21) 2005; 3
Shi (CR83) 2012; 7
Lohse, Drechsel, Bock (CR88) 2007; 52
Khakhlova, Bock (CR42) 2006; 46
Kumar, Nei, Dudley, Tamura (CR89) 2008; 9
Suchard (CR102) 2018; 4
Choi, Chung, Park (CR28) 2016; 7
Gray (CR1) 1989; 5
Gao, Yi, Yang, Su, Wang (CR66) 2009; 9
Asaf (CR26) 2017; 12
Dhar, Friebe, Kaul, Gill (CR23) 2006; 97
Poczai, Hyvönen (CR2) 2017; 12
Asaf (CR31) 2017; 8
Kumar (CR74) 2014; 8
Zhu, Guo, Gupta, Fan, Mower (CR25) 2016; 209
Hohmann (CR81) 2014; 14
Mascarenhas, Mettler, Pierce, Lowe (CR33) 1990; 15
CR49
Wicke, Schneeweiss, dePamphilis, Muller, Quandt (CR97) 2011; 76
CR47
Edh, Widén, Ceplitis (CR59) 2007; 16
CR40
Frailey, Chaluvadi, Vaughn, Coatney, Bennetzen (CR71) 2018; 18
Saski (CR8) 2005; 59
Clark (CR37) 1993; 339
Xu (CR32) 2003; 46
Fawcett, Van de Peer (CR13) 2010; 2
Roy (CR61) 2016; 11
Powell, Morgante, McDevitt, Vendramin, Rafalski (CR57) 1995; 92
Pauwels (CR58) 2012; 193
Xu (CR46) 2019; 57
Singh, Lal, Shasany (CR24) 2009; 8
Nie (CR62) 2012; 7
Lohmann, Bell, Calió, Winkworth (CR103) 2013; 171
Martínez-Alberola (CR51) 2013; 8
Khan, Asaf, Lee, Al-Harrasi, Al-Rawahi (CR39) 2018; 13
Wang (CR27) 2008; 8
Librado, Rozas (CR96) 2009; 25
Shaw (CR10) 2014; 101
Rambaut, Drummond, Xie, Baele, Suchard (CR107) 2018; 67
Lin, Huang, Wu, Hsu, Chaw (CR38) 2010; 2
Timme, Kuehl, Boore, Jansen (CR65) 2007; 94
Yi, Gao, Wang, Su, Wang (CR56) 2013; 5
Frazer, Pachter, Poliakov, Rubin, Dubchak (CR90) 2004; 32
Sato, Nakamura, Kaneko, Asamizu, Tabata (CR54) 1999; 6
Raubeson (CR67) 2007; 8
Goremykin, Hirsch-Ernst, Wölfl, Hellwig (CR80) 2004; 21
Asaf (CR29) 2017; 7
Goremykin, Holland, Hirsch-Ernst, Hellwig (CR50) 2005; 22
Katoh, Standley (CR94) 2013; 30
Nock (CR15) 2011; 9
Al-Dous (CR84) 2011; 29
Tangphatsornruang (CR64) 2009; 17
CR79
CR76
Iwanycki Ahlstrand (CR45) 2019; 46
CR75
Menezes (CR44) 2018; 8
Wambugu, Brozynska, Furtado, Waters, Henry (CR77) 2015; 5
Asaf (CR41) 2016; 7
Moore, Soltis, Bell, Burleigh, Soltis (CR12) 2010; 107
Ronquist, Huelsenbeck (CR98) 2003; 19
Lee, Jansen, Chumley, Kim (CR5) 2007; 24
Cavalier-Smith (CR63) 2002; 12
Zhao (CR52) 2015; 5
Luehrsen, Walbot (CR34) 1991; 225
CR4
Gascuel (CR101) 1997; 14
Zhang (CR78) 2016; 7
Jheng (CR9) 2012; 190
Wu, Lai, Lin, Wang, Chaw (CR73) 2009; 52
Kour, Kotwal, Dhar, Kaul (CR20) 2016; 42
Kimura (CR95) 1980; 16
Jansen (CR11) 2007; 104
Posada (CR100) 2008; 25
Gong, Gong (CR60) 2016; 12
Straub (CR16) 2012; 99
Kearse (CR85) 2012; 28
RØNSTED, Chase, Albach, Bello (CR22) 2002; 139
Akua, Berezin, Shaul (CR35) 2010; 10
Mascarenhas (CR36) 1990; 41
Samantaray, Dhagat, Maiti (CR19) 2010; 27
CR18
Rahn (CR17) 1996; 120
Pigg, Wehr (CR104) 2002; 30
CR14
Yao (CR68) 2015; 10
Qian (CR53) 2013; 8
Sugita, Sugiura (CR30) 1996; 32
Kode, Mudd, Iamtham, Day (CR48) 2005; 44
Benson (CR92) 1999; 27
CR93
Goulding, Olmstead, Morden, Wolfe (CR70) 1996; 252
Wesley, Hopkins (CR106) 1994; 22
Kurtz (CR91) 2001; 29
Graham, Olmstead (CR6) 2000; 87
Chen (CR43) 2015; 6
Schattner, Brooks, Lowe (CR87) 2005; 33
Wyman, Jansen, Boore (CR86) 2004; 20
Wu, Tembrock, Ge (CR99) 2015; 10
Lin, Wu, Huang, Chaw (CR69) 2012; 4
Zhang, Ma, Li (CR55) 2011; 6
McNeal, Kuehl, Boore, de Pamphilis (CR7) 2007; 7
Chumley (CR72) 2006; 23
Perret, Chautems, De Araujo, Salamin (CR105) 2013; 171
Schäferhoff (CR82) 2010; 10
Palmer (CR3) 1991; 7
O Khakhlova (60803_CR42) 2006; 46
K Rahn (60803_CR17) 1996; 120
Y Zhao (60803_CR52) 2015; 5
X Yi (60803_CR56) 2013; 5
AL Khan (60803_CR39) 2018; 13
MJ Moore (60803_CR12) 2010; 107
WQ Xu (60803_CR46) 2019; 57
RE Timme (60803_CR65) 2007; 94
Y-Q Gong (60803_CR60) 2016; 12
J Qian (60803_CR53) 2013; 8
LA Raubeson (60803_CR67) 2007; 8
LG Lohmann (60803_CR103) 2013; 171
60803_CR93
X Yao (60803_CR68) 2015; 10
M Kumar (60803_CR74) 2014; 8
MA Suchard (60803_CR102) 2018; 4
JR McNeal (60803_CR7) 2007; 7
M Sugita (60803_CR30) 1996; 32
J Chen (60803_CR43) 2015; 6
60803_CR14
F Ronquist (60803_CR98) 2003; 19
60803_CR18
SK Wyman (60803_CR86) 2004; 20
S Kurtz (60803_CR91) 2001; 29
M Dhar (60803_CR21) 2005; 3
T Cavalier-Smith (60803_CR63) 2002; 12
60803_CR40
K Pigg (60803_CR104) 2002; 30
B Kour (60803_CR20) 2016; 42
60803_CR4
T Akua (60803_CR35) 2010; 10
S Wicke (60803_CR97) 2011; 76
SC Straub (60803_CR16) 2012; 99
60803_CR47
VV Goremykin (60803_CR50) 2005; 22
60803_CR49
G Benson (60803_CR92) 1999; 27
C Saski (60803_CR8) 2005; 59
Z Wu (60803_CR99) 2015; 10
KR Luehrsen (60803_CR34) 1991; 225
CW Wesley (60803_CR106) 1994; 22
Y-J Zhang (60803_CR55) 2011; 6
PW Wambugu (60803_CR77) 2015; 5
P Librado (60803_CR96) 2009; 25
TW Chumley (60803_CR72) 2006; 23
JP Mascarenhas (60803_CR36) 1990; 41
S Sato (60803_CR54) 1999; 6
D Posada (60803_CR100) 2008; 25
S Asaf (60803_CR31) 2017; 8
Y Zhang (60803_CR78) 2016; 7
N Iwanycki Ahlstrand (60803_CR45) 2019; 46
H-L Lee (60803_CR5) 2007; 24
RK Jansen (60803_CR11) 2007; 104
M Kearse (60803_CR85) 2012; 28
S Asaf (60803_CR26) 2017; 12
W Powell (60803_CR57) 1995; 92
L Gao (60803_CR66) 2009; 9
F Martínez-Alberola (60803_CR51) 2013; 8
MK Dhar (60803_CR23) 2006; 97
S Kumar (60803_CR89) 2008; 9
D Mascarenhas (60803_CR33) 1990; 15
PS Roy (60803_CR61) 2016; 11
J Shaw (60803_CR10) 2014; 101
AJ Clark (60803_CR37) 1993; 339
C-P Lin (60803_CR69) 2012; 4
A Zhu (60803_CR25) 2016; 209
M Pauwels (60803_CR58) 2012; 193
K Katoh (60803_CR94) 2013; 30
S Asaf (60803_CR41) 2016; 7
SE Goulding (60803_CR70) 1996; 252
O Gascuel (60803_CR101) 1997; 14
B Schäferhoff (60803_CR82) 2010; 10
RJ Wang (60803_CR27) 2008; 8
C-P Lin (60803_CR38) 2010; 2
KS Choi (60803_CR28) 2016; 7
K Edh (60803_CR59) 2007; 16
N RØNSTED (60803_CR22) 2002; 139
EK Al-Dous (60803_CR84) 2011; 29
C Shi (60803_CR83) 2012; 7
CJ Nock (60803_CR15) 2011; 9
DC Frailey (60803_CR71) 2018; 18
SW Graham (60803_CR6) 2000; 87
JD Palmer (60803_CR3) 1991; 7
S Tangphatsornruang (60803_CR64) 2009; 17
M Kimura (60803_CR95) 1980; 16
S Asaf (60803_CR29) 2017; 7
VV Goremykin (60803_CR80) 2004; 21
C-F Jheng (60803_CR9) 2012; 190
M Lohse (60803_CR88) 2007; 52
APA Menezes (60803_CR44) 2018; 8
MW Gray (60803_CR1) 1989; 5
60803_CR75
P Schattner (60803_CR87) 2005; 33
60803_CR76
A Rambaut (60803_CR107) 2018; 67
60803_CR79
N Singh (60803_CR24) 2009; 8
N Hohmann (60803_CR81) 2014; 14
KA Frazer (60803_CR90) 2004; 32
X Nie (60803_CR62) 2012; 7
C-S Wu (60803_CR73) 2009; 52
S Samantaray (60803_CR19) 2010; 27
P Poczai (60803_CR2) 2017; 12
JA Fawcett (60803_CR13) 2010; 2
J Xu (60803_CR32) 2003; 46
V Kode (60803_CR48) 2005; 44
M Perret (60803_CR105) 2013; 171
References_xml – volume: 28
  start-page: 1647
  year: 2012
  end-page: 1649
  ident: CR85
  article-title: Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/bts199
– volume: 20
  start-page: 3252
  year: 2004
  end-page: 3255
  ident: CR86
  article-title: Automatic annotation of organellar genomes with DOGMA
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/bth352
– volume: 5
  start-page: 696
  year: 2015
  ident: CR52
  article-title: The complete chloroplast genome provides insight into the evolution and polymorphism of Panax ginseng
  publication-title: Frontiers in plant science
– volume: 44
  start-page: 237
  year: 2005
  end-page: 244
  ident: CR48
  article-title: The tobacco plastid accD gene is essential and is required for leaf development
  publication-title: The plant journal
  doi: 10.1111/j.1365-313X.2005.02533.x
– volume: 7
  start-page: 306
  year: 2016
  ident: CR78
  article-title: The complete chloroplast genome sequences of five Epimedium species: lights into phylogenetic and taxonomic analyses
  publication-title: Frontiers in plant science
– volume: 7
  start-page: e36869
  year: 2012
  ident: CR62
  article-title: Complete chloroplast genome sequence of a major invasive species, crofton weed (Ageratina adenophora)
  publication-title: PloS one
  doi: 10.1371/journal.pone.0036869
– volume: 25
  start-page: 1253
  year: 2008
  end-page: 1256
  ident: CR100
  article-title: jModelTest: phylogenetic model averaging
  publication-title: Molecular biology and evolution
  doi: 10.1093/molbev/msn083
– volume: 2
  start-page: 3
  year: 2010
  ident: CR13
  article-title: Angiosperm polyploids and their road to evolutionary success
  publication-title: Trends in Evolutionary Biology
  doi: 10.4081/eb.2010.e3
– volume: 27
  start-page: 297
  year: 2010
  end-page: 303
  ident: CR19
  article-title: Evaluation of genetic relationships in Plantago species using Random Amplified Polymorphic DNA (RAPD) markers
  publication-title: Plant biotechnology
  doi: 10.5511/plantbiotechnology.27.297
– volume: 8
  start-page: 1273
  year: 2009
  end-page: 1284
  ident: CR24
  article-title: Phenotypic and RAPD diversity among 80 germplasm accessions of the medicinal plant isabgol (Plantago ovata, Plantaginaceae)
  publication-title: Genet. Mol. Res
  doi: 10.4238/vol8-4gmr583
– volume: 8
  start-page: e79685
  year: 2013
  ident: CR51
  article-title: Balanced gene losses, duplications and intensive rearrangements led to an unusual regularly sized genome in Arbutus unedo chloroplasts
  publication-title: PLoS One
  doi: 10.1371/journal.pone.0079685
– volume: 101
  start-page: 1987
  year: 2014
  end-page: 2004
  ident: CR10
  article-title: Chloroplast DNA sequence utility for the lowest phylogenetic and phylogeographic inferences in angiosperms: the tortoise and the hare IV
  publication-title: American Journal of Botany
  doi: 10.3732/ajb.1400398
– volume: 10
  year: 2010
  ident: CR35
  article-title: The leader intron of AtMHX can elicit, in the absence of splicing, low-level intron-mediated enhancement that depends on the internal intron sequence
  publication-title: BMC Plant Biol
  doi: 10.1186/1471-2229-10-93
– volume: 3
  start-page: 252
  year: 2005
  end-page: 263
  ident: CR21
  article-title: Plantago ovata: genetic diversity, cultivation, utilization and chemistry
  publication-title: Plant Genetic Resources
  doi: 10.1079/PGR200582
– volume: 7
  year: 2007
  ident: CR7
  article-title: Complete plastid genome sequences suggest strong selection for retention of photosynthetic genes in the parasitic plant genus Cuscuta
  publication-title: BMC Plant Biology
  doi: 10.1186/1471-2229-7-57
– volume: 29
  start-page: 4633
  year: 2001
  end-page: 4642
  ident: CR91
  article-title: REPuter: the manifold applications of repeat analysis on a genomic scale
  publication-title: Nucleic acids research
  doi: 10.1093/nar/29.22.4633
– volume: 46
  start-page: 85
  year: 2006
  end-page: 94
  ident: CR42
  article-title: Elimination of deleterious mutations in plastid genomes by gene conversion
  publication-title: The Plant Journal
  doi: 10.1111/j.1365-313X.2006.02673.x
– volume: 30
  start-page: 772
  year: 2013
  end-page: 780
  ident: CR94
  article-title: MAFFT multiple sequence alignment software version 7: improvements in performance and usability
  publication-title: Molecular biology and evolution
  doi: 10.1093/molbev/mst010
– volume: 8
  start-page: 36
  year: 2008
  ident: CR27
  article-title: Dynamics and evolution of the inverted repeat-large single copy junctions in the chloroplast genomes of monocots
  publication-title: BMC Evol Biol
  doi: 10.1186/1471-2148-8-36
– volume: 193
  start-page: 916
  year: 2012
  end-page: 928
  ident: CR58
  article-title: Nuclear and chloroplast DNA phylogeography reveals vicariance among European populations of the model species for the study of metal tolerance, Arabidopsis halleri (Brassicaceae)
  publication-title: New Phytologist
  doi: 10.1111/j.1469-8137.2011.04003.x
– volume: 8
  year: 2018
  ident: CR44
  article-title: Chloroplast genomes of Byrsonima species (Malpighiaceae): comparative analysis and screening of high divergence sequences
  publication-title: Scientific Reports
  doi: 10.1038/s41598-018-20189-4
– volume: 139
  start-page: 323
  year: 2002
  end-page: 338
  ident: CR22
  article-title: Phylogenetic relationships within Plantago (Plantaginaceae): evidence from nuclear ribosomal ITS and plastid trnL-F sequence data
  publication-title: Botanical Journal of the Linnean Society
  doi: 10.1046/j.1095-8339.2002.00070.x
– volume: 24
  start-page: 1161
  year: 2007
  end-page: 1180
  ident: CR5
  article-title: Gene relocations within chloroplast genomes of Jasminum and Menodora (Oleaceae) are due to multiple, overlapping inversions
  publication-title: Molecular Biology and Evolution
  doi: 10.1093/molbev/msm036
– volume: 6
  start-page: 447
  year: 2015
  ident: CR43
  article-title: The complete chloroplast genome sequence of the relict woody plant Metasequoia glyptostroboides Hu et Cheng
  publication-title: Frontiers in plant science
– volume: 27
  start-page: 573
  year: 1999
  ident: CR92
  article-title: Tandem repeats finder: a program to analyze DNA sequences
  publication-title: Nucleic acids research
  doi: 10.1093/nar/27.2.573
– volume: 4
  start-page: 374
  year: 2012
  end-page: 381
  ident: CR69
  article-title: The Complete Chloroplast Genome of Ginkgo biloba Reveals the Mechanism of Inverted Repeat Contraction
  publication-title: Genome Biology and Evolution
  doi: 10.1093/gbe/evs021
– volume: 4
  start-page: vey016
  year: 2018
  ident: CR102
  article-title: Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10
  publication-title: Virus Evolution
  doi: 10.1093/ve/vey016
– volume: 14
  year: 2014
  ident: CR81
  article-title: Taming the wild: resolving the gene pools of non-model Arabidopsis lineages
  publication-title: BMC evolutionary biology
  doi: 10.1186/s12862-014-0224-x
– volume: 46
  start-page: 706
  year: 2019
  end-page: 722
  ident: CR45
  article-title: Ancestral range reconstruction of remote oceanic island species of Plantago (Plantaginaceae) reveals differing scales and modes of dispersal
  publication-title: Journal of biogeography
  doi: 10.1111/jbi.13525
– volume: 52
  start-page: 267
  year: 2007
  end-page: 274
  ident: CR88
  article-title: OrganellarGenomeDRAW (OGDRAW): a tool for the easy generation of high-quality custom graphical maps of plastid and mitochondrial genomes
  publication-title: Curr Genet
  doi: 10.1007/s00294-007-0161-y
– volume: 2
  start-page: 504
  year: 2010
  end-page: 517
  ident: CR38
  article-title: Comparative chloroplast genomics reveals the evolution of Pinaceae genera and subfamilies
  publication-title: Genome biology and evolution
  doi: 10.1093/gbe/evq036
– volume: 29
  start-page: 521
  year: 2011
  ident: CR84
  article-title: De novo genome sequencing and comparative genomics of date palm (Phoenix dactylifera)
  publication-title: Nature biotechnology
  doi: 10.1038/nbt.1860
– volume: 8
  start-page: 304
  year: 2017
  ident: CR31
  article-title: The complete chloroplast genome of wild rice (Oryza minuta) and its comparison to related species
  publication-title: Frontiers in plant science
  doi: 10.3389/fpls.2017.00304
– volume: 9
  start-page: 328
  year: 2011
  end-page: 333
  ident: CR15
  article-title: Chloroplast genome sequences from total DNA for plant identification
  publication-title: Plant biotechnology journal
  doi: 10.1111/j.1467-7652.2010.00558.x
– ident: CR18
– volume: 171
  start-page: 61
  year: 2013
  end-page: 79
  ident: CR105
  article-title: Temporal and spatial origin of Gesneriaceae in the New World inferred from plastid DNA sequences
  publication-title: Botanical Journal of the Linnean Society
  doi: 10.1111/j.1095-8339.2012.01303.x
– ident: CR47
– volume: 14
  start-page: 685
  year: 1997
  end-page: 695
  ident: CR101
  article-title: BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data
  publication-title: Molecular biology and evolution
  doi: 10.1093/oxfordjournals.molbev.a025808
– volume: 8
  start-page: e57607
  year: 2013
  ident: CR53
  article-title: The complete chloroplast genome sequence of the medicinal plant Salvia miltiorrhiza
  publication-title: PloS one
  doi: 10.1371/journal.pone.0057607
– volume: 76
  start-page: 273
  year: 2011
  end-page: 297
  ident: CR97
  article-title: The evolution of the plastid chromosome in land plants: gene content, gene order, gene function
  publication-title: Plant Mol Biol
  doi: 10.1007/s11103-011-9762-4
– volume: 120
  start-page: 145
  year: 1996
  end-page: 198
  ident: CR17
  article-title: A phylogenetic study of the Plantaginaceae
  publication-title: Botanical Journal of the Linnean Society
– volume: 18
  year: 2018
  ident: CR71
  article-title: Gene loss and genome rearrangement in the plastids of five Hemiparasites in the family Orobanchaceae
  publication-title: BMC Plant Biology
  doi: 10.1186/s12870-018-1249-x
– volume: 52
  start-page: 115
  year: 2009
  end-page: 124
  ident: CR73
  article-title: Evolution of reduced and compact chloroplast genomes (cpDNAs) in gnetophytes: selection toward a lower-cost strategy
  publication-title: Molecular Phylogenetics and Evolution
  doi: 10.1016/j.ympev.2008.12.026
– volume: 7
  year: 2017
  ident: CR29
  article-title: Chloroplast genomes of Arabidopsis halleri ssp. gemmifera and Arabidopsis lyrata ssp. petraea: Structures and comparative analysis
  publication-title: Scientific reports
  doi: 10.1038/s41598-017-07891-5
– volume: 339
  start-page: 225
  year: 1993
  end-page: 232
  ident: CR37
  article-title: Enhancing the efficiency of transgene expression
  publication-title: Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences
  doi: 10.1098/rstb.1993.0020
– volume: 7
  start-page: 843
  year: 2016
  ident: CR41
  article-title: Complete chloroplast genome of Nicotiana otophora and its comparison with related species
  publication-title: Frontiers in plant science
  doi: 10.3389/fpls.2016.00843
– volume: 33
  start-page: W686
  year: 2005
  end-page: W689
  ident: CR87
  article-title: The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs
  publication-title: Nucleic acids research
  doi: 10.1093/nar/gki366
– volume: 32
  start-page: W273
  year: 2004
  end-page: W279
  ident: CR90
  article-title: VISTA: computational tools for comparative genomics
  publication-title: Nucleic acids research
  doi: 10.1093/nar/gkh458
– volume: 6
  start-page: e20596
  year: 2011
  ident: CR55
  article-title: High-throughput sequencing of six bamboo chloroplast genomes: phylogenetic implications for temperate woody bamboos (Poaceae: Bambusoideae)
  publication-title: PloS one
  doi: 10.1371/journal.pone.0020596
– volume: 22
  start-page: 27
  year: 1994
  end-page: 34
  ident: CR106
  article-title: The Eocene orchards and gardens of Republic, Washington
  publication-title: Washington Geology
– volume: 41
  start-page: 317
  year: 1990
  end-page: 338
  ident: CR36
  article-title: Gene activity during pollen development
  publication-title: Annual review of plant biology
  doi: 10.1146/annurev.pp.41.060190.001533
– volume: 5
  start-page: 688
  year: 2013
  end-page: 698
  ident: CR56
  article-title: The complete chloroplast genome sequence of Cephalotaxus oliveri (Cephalotaxaceae): evolutionary comparison of Cephalotaxus chloroplast DNAs and insights into the loss of inverted repeat copies in gymnosperms
  publication-title: Genome biology and evolution
  doi: 10.1093/gbe/evt042
– volume: 59
  start-page: 309
  year: 2005
  end-page: 322
  ident: CR8
  article-title: Complete chloroplast genome sequence of Glycine max and comparative analyses with other legume genomes
  publication-title: Plant molecular biology
  doi: 10.1007/s11103-005-8882-0
– volume: 171
  start-page: 154
  year: 2013
  end-page: 170
  ident: CR103
  article-title: Pattern and timing of biogeographical history in the Neotropical tribe Bignonieae (Bignoniaceae)
  publication-title: Botanical Journal of the Linnean Society
  doi: 10.1111/j.1095-8339.2012.01311.x
– volume: 97
  start-page: 541
  year: 2006
  end-page: 548
  ident: CR23
  article-title: Characterization and physical mapping of ribosomal RNA gene families in Plantago
  publication-title: Annals of botany
  doi: 10.1093/aob/mcl017
– volume: 57
  start-page: 55
  year: 2019
  end-page: 65
  ident: CR46
  article-title: Comparative genomics of figworts (Scrophularia, Scrophulariaceae), with implications for the evolution of Scrophularia and Lamiales
  publication-title: Journal of systematics and evolution
  doi: 10.1111/jse.12421
– volume: 12
  start-page: e0182281
  year: 2017
  ident: CR26
  article-title: Comparative analysis of complete plastid genomes from wild soybean (Glycine soja) and nine other Glycine species
  publication-title: PloS one
  doi: 10.1371/journal.pone.0182281
– volume: 8
  year: 2007
  ident: CR67
  article-title: Comparative chloroplast genomics: analyses including new sequences from the angiosperms Nuphar advena and Ranunculus macranthus
  publication-title: BMC genomics
  doi: 10.1186/1471-2164-8-174
– ident: CR49
– ident: CR93
– volume: 190
  start-page: 62
  year: 2012
  end-page: 73
  ident: CR9
  article-title: The comparative chloroplast genomic analysis of photosynthetic orchids and developing DNA markers to distinguish Phalaenopsis orchids
  publication-title: Plant science
  doi: 10.1016/j.plantsci.2012.04.001
– ident: CR4
– volume: 99
  start-page: 349
  year: 2012
  end-page: 364
  ident: CR16
  article-title: Navigating the tip of the genomic iceberg: Next‐generation sequencing for plant systematics
  publication-title: American Journal of Botany
  doi: 10.3732/ajb.1100335
– volume: 12
  start-page: R62
  year: 2002
  end-page: R64
  ident: CR63
  article-title: Chloroplast evolution: secondary symbiogenesis and multiple losses
  publication-title: Current Biology
  doi: 10.1016/S0960-9822(01)00675-3
– volume: 13
  start-page: e0200104
  year: 2018
  ident: CR39
  article-title: First chloroplast genomics study of Phoenix dactylifera (var. Naghal and Khanezi): A comparative analysis
  publication-title: PLOS ONE
  doi: 10.1371/journal.pone.0200104
– volume: 12
  start-page: e0187199
  year: 2017
  ident: CR2
  article-title: The complete chloroplast genome sequence of the CAM epiphyte Spanish moss (Tillandsia usneoides, Bromeliaceae) and its comparative analysis
  publication-title: PloS one
  doi: 10.1371/journal.pone.0187199
– volume: 10
  start-page: e0129347
  year: 2015
  ident: CR68
  article-title: The first complete chloroplast genome sequences in Actinidiaceae: genome structure and comparative analysis
  publication-title: PloS one
  doi: 10.1371/journal.pone.0129347
– volume: 16
  start-page: 4972
  year: 2007
  end-page: 4983
  ident: CR59
  article-title: Nuclear and chloroplast microsatellites reveal extreme population differentiation and limited gene flow in the Aegean endemic Brassica cretica (Brassicaceae)
  publication-title: Molecular Ecology
  doi: 10.1111/j.1365-294X.2007.03585.x
– volume: 5
  year: 2015
  ident: CR77
  article-title: Relationships of wild and domesticated rices (Oryza AA genome species) based upon whole chloroplast genome sequences
  publication-title: Scientific reports
  doi: 10.1038/srep13957
– volume: 21
  start-page: 1445
  year: 2004
  end-page: 1454
  ident: CR80
  article-title: The chloroplast genome of Nymphaea alba: whole-genome analyses and the problem of identifying the most basal angiosperm
  publication-title: Molecular Biology and Evolution
  doi: 10.1093/molbev/msh147
– volume: 32
  start-page: 315
  year: 1996
  end-page: 326
  ident: CR30
  article-title: Regulation of gene expression in chloroplasts of higher plants
  publication-title: Plant molecular biology
  doi: 10.1007/BF00039388
– volume: 67
  start-page: 901
  year: 2018
  end-page: 904
  ident: CR107
  article-title: Posterior summarization in Bayesian phylogenetics using Tracer 1.7
  publication-title: Systematic biology
  doi: 10.1093/sysbio/syy032
– volume: 7
  start-page: 5
  year: 1991
  end-page: 53
  ident: CR3
  article-title: Plastid chromosomes: structure and evolution
  publication-title: The molecular biology of plastids
  doi: 10.1016/B978-0-12-715007-9.50009-8
– volume: 6
  start-page: 283
  year: 1999
  end-page: 290
  ident: CR54
  article-title: Complete structure of the chloroplast genome of Arabidopsis thaliana
  publication-title: DNA research
  doi: 10.1093/dnares/6.5.283
– volume: 225
  start-page: 81
  year: 1991
  end-page: 93
  ident: CR34
  article-title: Intron enhancement of gene expression and the splicing efficiency of introns in maize cells
  publication-title: Molecular & general genetics: MGG
  doi: 10.1007/BF00282645
– ident: CR75
– volume: 10
  year: 2010
  ident: CR82
  article-title: Towards resolving Lamiales relationships: insights from rapidly evolving chloroplast sequences
  publication-title: BMC Evolutionary Biology
  doi: 10.1186/1471-2148-10-352
– volume: 9
  year: 2009
  ident: CR66
  article-title: Complete chloroplast genome sequence of a tree fern Alsophila spinulosa: insights into evolutionary changes in fern chloroplast genomes
  publication-title: BMC evolutionary biology
  doi: 10.1186/1471-2148-9-130
– volume: 92
  start-page: 7759
  year: 1995
  end-page: 7763
  ident: CR57
  article-title: Polymorphic simple sequence repeat regions in chloroplast genomes: applications to the population genetics of pines
  publication-title: Proceedings of the National Academy of Sciences
  doi: 10.1073/pnas.92.17.7759
– volume: 19
  start-page: 1572
  year: 2003
  end-page: 1574
  ident: CR98
  article-title: MrBayes 3: Bayesian phylogenetic inference under mixed models
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btg180
– volume: 22
  start-page: 1813
  year: 2005
  end-page: 1822
  ident: CR50
  article-title: Analysis of Acorus calamus chloroplast genome and its phylogenetic implications
  publication-title: Molecular biology and evolution
  doi: 10.1093/molbev/msi173
– volume: 94
  start-page: 302
  year: 2007
  end-page: 312
  ident: CR65
  article-title: A comparative analysis of the Lactuca and Helianthus (Asteraceae) plastid genomes: identification of divergent regions and categorization of shared repeats
  publication-title: American Journal of Botany
  doi: 10.3732/ajb.94.3.302
– volume: 23
  start-page: 2175
  year: 2006
  end-page: 2190
  ident: CR72
  article-title: The complete chloroplast genome sequence of Pelargonium× hortorum: organization and evolution of the largest and most highly rearranged chloroplast genome of land plants
  publication-title: Molecular biology and evolution
  doi: 10.1093/molbev/msl089
– volume: 9
  start-page: 299
  year: 2008
  end-page: 306
  ident: CR89
  article-title: MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences
  publication-title: Brief Bioinform
  doi: 10.1093/bib/bbn017
– volume: 87
  start-page: 1712
  year: 2000
  end-page: 1730
  ident: CR6
  article-title: Utility of 17 chloroplast genes for inferring the phylogeny of the basal angiosperms
  publication-title: American Journal of Botany
  doi: 10.2307/2656749
– volume: 46
  start-page: 561
  year: 2003
  ident: CR32
  article-title: The first intron of rice EPSP synthase enhances expression of foreign gene
  publication-title: Science in China Series C: Life Sciences
  doi: 10.1360/02yc0120
– volume: 11
  start-page: e0162268
  year: 2016
  ident: CR61
  article-title: Nuclear and chloroplast DNA variation provides insights into population structure and multiple origin of native aromatic rices of Odisha, India
  publication-title: PloS one
  doi: 10.1371/journal.pone.0162268
– volume: 12
  start-page: 93
  year: 2016
  ident: CR60
  article-title: Pollen-mediated gene flow promotes low nuclear genetic differentiation among populations of Cycas debaoensis (Cycadaceae)
  publication-title: Tree genetics & genomes
  doi: 10.1007/s11295-016-1051-6
– ident: CR14
– volume: 17
  start-page: 11
  year: 2009
  end-page: 22
  ident: CR64
  article-title: The chloroplast genome sequence of mungbean (Vigna radiata) determined by high-throughput pyrosequencing: structural organization and phylogenetic relationships
  publication-title: DNA research
  doi: 10.1093/dnares/dsp025
– volume: 5
  start-page: 294
  year: 1989
  end-page: 299
  ident: CR1
  article-title: The evolutionary origins of organelles
  publication-title: Trends in Genetics
  doi: 10.1016/0168-9525(89)90111-X
– ident: CR79
– volume: 25
  start-page: 1451
  year: 2009
  end-page: 1452
  ident: CR96
  article-title: DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btp187
– volume: 7
  start-page: e31468
  year: 2012
  ident: CR83
  article-title: An improved chloroplast DNA extraction procedure for whole plastid genome sequencing
  publication-title: Plos one
  doi: 10.1371/journal.pone.0031468
– ident: CR40
– volume: 107
  start-page: 4623
  year: 2010
  end-page: 4628
  ident: CR12
  article-title: Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots
  publication-title: Proceedings of the National Academy of Sciences
  doi: 10.1073/pnas.0907801107
– volume: 209
  start-page: 1747
  year: 2016
  end-page: 1756
  ident: CR25
  article-title: Evolutionary dynamics of the plastid inverted repeat: the effects of expansion, contraction, and loss on substitution rates
  publication-title: New Phytologist
  doi: 10.1111/nph.13743
– volume: 30
  start-page: 3
  year: 2002
  end-page: 16
  ident: CR104
  article-title: Tertiary flowers, fruits, and seeds of Washington State and adjacent areas-Part III
  publication-title: Washington Geology
– volume: 8
  start-page: 1639
  year: 2014
  ident: CR74
  article-title: Phenotypic and molecular characterization of selected species of ‘Plantago’ with emphasis on ‘Plantago ovata’
  publication-title: Australian Journal of Crop Science
– volume: 42
  start-page: 37
  year: 2016
  end-page: 41
  ident: CR20
  article-title: Genetic diversity analysis in Plantago ovata and some of its wild allies using RAPD markers
  publication-title: Russian agricultural sciences
  doi: 10.3103/S1068367416010055
– volume: 10
  start-page: e0118019
  year: 2015
  ident: CR99
  article-title: Are Differences in Genomic Data Sets due to True Biological Variants or Errors in Genome Assembly: An Example from Two Chloroplast Genomes
  publication-title: PLOS ONE
  doi: 10.1371/journal.pone.0118019
– volume: 7
  start-page: 355
  year: 2016
  ident: CR28
  article-title: The complete chloroplast genome sequences of three Veroniceae species (Plantaginaceae): comparative analysis and highly divergent regions
  publication-title: Frontiers in plant science
– volume: 16
  start-page: 111
  year: 1980
  end-page: 120
  ident: CR95
  article-title: A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
  publication-title: J Mol Evol
  doi: 10.1007/BF01731581
– volume: 252
  start-page: 195
  year: 1996
  end-page: 206
  ident: CR70
  article-title: Ebb and flow of the chloroplast inverted repeat
  publication-title: Molecular & general genetics: MGG
  doi: 10.1007/BF02173220
– ident: CR76
– volume: 15
  start-page: 913
  year: 1990
  end-page: 920
  ident: CR33
  article-title: Intron-mediated enhancement of heterologous gene expression in maize
  publication-title: Plant Mol Biol
  doi: 10.1007/BF00039430
– volume: 104
  start-page: 19369
  year: 2007
  end-page: 19374
  ident: CR11
  article-title: Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns
  publication-title: Proceedings of the National Academy of Sciences
  doi: 10.1073/pnas.0709121104
– volume: 12
  start-page: R62
  year: 2002
  ident: 60803_CR63
  publication-title: Current Biology
  doi: 10.1016/S0960-9822(01)00675-3
– volume: 3
  start-page: 252
  year: 2005
  ident: 60803_CR21
  publication-title: Plant Genetic Resources
  doi: 10.1079/PGR200582
– volume: 252
  start-page: 195
  year: 1996
  ident: 60803_CR70
  publication-title: Molecular & general genetics: MGG
  doi: 10.1007/BF02173220
– volume: 46
  start-page: 85
  year: 2006
  ident: 60803_CR42
  publication-title: The Plant Journal
  doi: 10.1111/j.1365-313X.2006.02673.x
– volume: 42
  start-page: 37
  year: 2016
  ident: 60803_CR20
  publication-title: Russian agricultural sciences
  doi: 10.3103/S1068367416010055
– volume: 209
  start-page: 1747
  year: 2016
  ident: 60803_CR25
  publication-title: New Phytologist
  doi: 10.1111/nph.13743
– volume: 33
  start-page: W686
  year: 2005
  ident: 60803_CR87
  publication-title: Nucleic acids research
  doi: 10.1093/nar/gki366
– volume: 104
  start-page: 19369
  year: 2007
  ident: 60803_CR11
  publication-title: Proceedings of the National Academy of Sciences
  doi: 10.1073/pnas.0709121104
– volume: 29
  start-page: 4633
  year: 2001
  ident: 60803_CR91
  publication-title: Nucleic acids research
  doi: 10.1093/nar/29.22.4633
– volume: 24
  start-page: 1161
  year: 2007
  ident: 60803_CR5
  publication-title: Molecular Biology and Evolution
  doi: 10.1093/molbev/msm036
– volume: 30
  start-page: 772
  year: 2013
  ident: 60803_CR94
  publication-title: Molecular biology and evolution
  doi: 10.1093/molbev/mst010
– volume: 101
  start-page: 1987
  year: 2014
  ident: 60803_CR10
  publication-title: American Journal of Botany
  doi: 10.3732/ajb.1400398
– volume: 225
  start-page: 81
  year: 1991
  ident: 60803_CR34
  publication-title: Molecular & general genetics: MGG
  doi: 10.1007/BF00282645
– ident: 60803_CR40
  doi: 10.1007/s10709-018-0037-8
– volume: 8
  start-page: 1639
  year: 2014
  ident: 60803_CR74
  publication-title: Australian Journal of Crop Science
– volume: 7
  year: 2017
  ident: 60803_CR29
  publication-title: Scientific reports
  doi: 10.1038/s41598-017-07891-5
– volume: 17
  start-page: 11
  year: 2009
  ident: 60803_CR64
  publication-title: DNA research
  doi: 10.1093/dnares/dsp025
– volume: 67
  start-page: 901
  year: 2018
  ident: 60803_CR107
  publication-title: Systematic biology
  doi: 10.1093/sysbio/syy032
– volume: 12
  start-page: e0182281
  year: 2017
  ident: 60803_CR26
  publication-title: PloS one
  doi: 10.1371/journal.pone.0182281
– volume: 7
  start-page: 843
  year: 2016
  ident: 60803_CR41
  publication-title: Frontiers in plant science
  doi: 10.3389/fpls.2016.00843
– volume: 5
  start-page: 688
  year: 2013
  ident: 60803_CR56
  publication-title: Genome biology and evolution
  doi: 10.1093/gbe/evt042
– volume: 27
  start-page: 573
  year: 1999
  ident: 60803_CR92
  publication-title: Nucleic acids research
  doi: 10.1093/nar/27.2.573
– volume: 87
  start-page: 1712
  year: 2000
  ident: 60803_CR6
  publication-title: American Journal of Botany
  doi: 10.2307/2656749
– volume: 15
  start-page: 913
  year: 1990
  ident: 60803_CR33
  publication-title: Plant Mol Biol
  doi: 10.1007/BF00039430
– volume: 5
  start-page: 294
  year: 1989
  ident: 60803_CR1
  publication-title: Trends in Genetics
  doi: 10.1016/0168-9525(89)90111-X
– ident: 60803_CR14
  doi: 10.1079/9780851999043.0081
– volume: 10
  year: 2010
  ident: 60803_CR35
  publication-title: BMC Plant Biol
  doi: 10.1186/1471-2229-10-93
– volume: 5
  year: 2015
  ident: 60803_CR77
  publication-title: Scientific reports
  doi: 10.1038/srep13957
– ident: 60803_CR79
  doi: 10.1073/pnas.0907801107
– volume: 10
  start-page: e0118019
  year: 2015
  ident: 60803_CR99
  publication-title: PLOS ONE
  doi: 10.1371/journal.pone.0118019
– volume: 13
  start-page: e0200104
  year: 2018
  ident: 60803_CR39
  publication-title: PLOS ONE
  doi: 10.1371/journal.pone.0200104
– volume: 171
  start-page: 61
  year: 2013
  ident: 60803_CR105
  publication-title: Botanical Journal of the Linnean Society
  doi: 10.1111/j.1095-8339.2012.01303.x
– volume: 7
  start-page: 355
  year: 2016
  ident: 60803_CR28
  publication-title: Frontiers in plant science
– volume: 8
  start-page: e79685
  year: 2013
  ident: 60803_CR51
  publication-title: PLoS One
  doi: 10.1371/journal.pone.0079685
– volume: 139
  start-page: 323
  year: 2002
  ident: 60803_CR22
  publication-title: Botanical Journal of the Linnean Society
  doi: 10.1046/j.1095-8339.2002.00070.x
– volume: 46
  start-page: 561
  year: 2003
  ident: 60803_CR32
  publication-title: Science in China Series C: Life Sciences
  doi: 10.1360/02yc0120
– volume: 57
  start-page: 55
  year: 2019
  ident: 60803_CR46
  publication-title: Journal of systematics and evolution
  doi: 10.1111/jse.12421
– volume: 7
  start-page: e31468
  year: 2012
  ident: 60803_CR83
  publication-title: Plos one
  doi: 10.1371/journal.pone.0031468
– volume: 22
  start-page: 1813
  year: 2005
  ident: 60803_CR50
  publication-title: Molecular biology and evolution
  doi: 10.1093/molbev/msi173
– volume: 76
  start-page: 273
  year: 2011
  ident: 60803_CR97
  publication-title: Plant Mol Biol
  doi: 10.1007/s11103-011-9762-4
– volume: 97
  start-page: 541
  year: 2006
  ident: 60803_CR23
  publication-title: Annals of botany
  doi: 10.1093/aob/mcl017
– volume: 120
  start-page: 145
  year: 1996
  ident: 60803_CR17
  publication-title: Botanical Journal of the Linnean Society
– volume: 11
  start-page: e0162268
  year: 2016
  ident: 60803_CR61
  publication-title: PloS one
  doi: 10.1371/journal.pone.0162268
– volume: 8
  start-page: 36
  year: 2008
  ident: 60803_CR27
  publication-title: BMC Evol Biol
  doi: 10.1186/1471-2148-8-36
– volume: 12
  start-page: 93
  year: 2016
  ident: 60803_CR60
  publication-title: Tree genetics & genomes
  doi: 10.1007/s11295-016-1051-6
– volume: 10
  year: 2010
  ident: 60803_CR82
  publication-title: BMC Evolutionary Biology
  doi: 10.1186/1471-2148-10-352
– volume: 12
  start-page: e0187199
  year: 2017
  ident: 60803_CR2
  publication-title: PloS one
  doi: 10.1371/journal.pone.0187199
– volume: 9
  start-page: 299
  year: 2008
  ident: 60803_CR89
  publication-title: Brief Bioinform
  doi: 10.1093/bib/bbn017
– volume: 19
  start-page: 1572
  year: 2003
  ident: 60803_CR98
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btg180
– volume: 8
  start-page: e57607
  year: 2013
  ident: 60803_CR53
  publication-title: PloS one
  doi: 10.1371/journal.pone.0057607
– volume: 99
  start-page: 349
  year: 2012
  ident: 60803_CR16
  publication-title: American Journal of Botany
  doi: 10.3732/ajb.1100335
– volume: 52
  start-page: 267
  year: 2007
  ident: 60803_CR88
  publication-title: Curr Genet
  doi: 10.1007/s00294-007-0161-y
– volume: 7
  start-page: 306
  year: 2016
  ident: 60803_CR78
  publication-title: Frontiers in plant science
– volume: 92
  start-page: 7759
  year: 1995
  ident: 60803_CR57
  publication-title: Proceedings of the National Academy of Sciences
  doi: 10.1073/pnas.92.17.7759
– ident: 60803_CR18
– volume: 52
  start-page: 115
  year: 2009
  ident: 60803_CR73
  publication-title: Molecular Phylogenetics and Evolution
  doi: 10.1016/j.ympev.2008.12.026
– volume: 21
  start-page: 1445
  year: 2004
  ident: 60803_CR80
  publication-title: Molecular Biology and Evolution
  doi: 10.1093/molbev/msh147
– volume: 9
  start-page: 328
  year: 2011
  ident: 60803_CR15
  publication-title: Plant biotechnology journal
  doi: 10.1111/j.1467-7652.2010.00558.x
– volume: 14
  year: 2014
  ident: 60803_CR81
  publication-title: BMC evolutionary biology
  doi: 10.1186/s12862-014-0224-x
– volume: 59
  start-page: 309
  year: 2005
  ident: 60803_CR8
  publication-title: Plant molecular biology
  doi: 10.1007/s11103-005-8882-0
– volume: 107
  start-page: 4623
  year: 2010
  ident: 60803_CR12
  publication-title: Proceedings of the National Academy of Sciences
  doi: 10.1073/pnas.0907801107
– volume: 41
  start-page: 317
  year: 1990
  ident: 60803_CR36
  publication-title: Annual review of plant biology
  doi: 10.1146/annurev.pp.41.060190.001533
– volume: 94
  start-page: 302
  year: 2007
  ident: 60803_CR65
  publication-title: American Journal of Botany
  doi: 10.3732/ajb.94.3.302
– volume: 16
  start-page: 111
  year: 1980
  ident: 60803_CR95
  publication-title: J Mol Evol
  doi: 10.1007/BF01731581
– volume: 20
  start-page: 3252
  year: 2004
  ident: 60803_CR86
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/bth352
– volume: 4
  start-page: vey016
  year: 2018
  ident: 60803_CR102
  publication-title: Virus Evolution
  doi: 10.1093/ve/vey016
– volume: 6
  start-page: 447
  year: 2015
  ident: 60803_CR43
  publication-title: Frontiers in plant science
– volume: 4
  start-page: 374
  year: 2012
  ident: 60803_CR69
  publication-title: Genome Biology and Evolution
  doi: 10.1093/gbe/evs021
– ident: 60803_CR76
– ident: 60803_CR93
– volume: 30
  start-page: 3
  year: 2002
  ident: 60803_CR104
  publication-title: Washington Geology
– volume: 8
  start-page: 304
  year: 2017
  ident: 60803_CR31
  publication-title: Frontiers in plant science
  doi: 10.3389/fpls.2017.00304
– volume: 10
  start-page: e0129347
  year: 2015
  ident: 60803_CR68
  publication-title: PloS one
  doi: 10.1371/journal.pone.0129347
– volume: 8
  start-page: 1273
  year: 2009
  ident: 60803_CR24
  publication-title: Genet. Mol. Res
  doi: 10.4238/vol8-4gmr583
– volume: 14
  start-page: 685
  year: 1997
  ident: 60803_CR101
  publication-title: Molecular biology and evolution
  doi: 10.1093/oxfordjournals.molbev.a025808
– volume: 18
  year: 2018
  ident: 60803_CR71
  publication-title: BMC Plant Biology
  doi: 10.1186/s12870-018-1249-x
– volume: 8
  year: 2007
  ident: 60803_CR67
  publication-title: BMC genomics
  doi: 10.1186/1471-2164-8-174
– volume: 193
  start-page: 916
  year: 2012
  ident: 60803_CR58
  publication-title: New Phytologist
  doi: 10.1111/j.1469-8137.2011.04003.x
– volume: 2
  start-page: 504
  year: 2010
  ident: 60803_CR38
  publication-title: Genome biology and evolution
  doi: 10.1093/gbe/evq036
– volume: 44
  start-page: 237
  year: 2005
  ident: 60803_CR48
  publication-title: The plant journal
  doi: 10.1111/j.1365-313X.2005.02533.x
– volume: 32
  start-page: 315
  year: 1996
  ident: 60803_CR30
  publication-title: Plant molecular biology
  doi: 10.1007/BF00039388
– ident: 60803_CR49
  doi: 10.1007/s00239-008-9086-4
– volume: 46
  start-page: 706
  year: 2019
  ident: 60803_CR45
  publication-title: Journal of biogeography
  doi: 10.1111/jbi.13525
– volume: 27
  start-page: 297
  year: 2010
  ident: 60803_CR19
  publication-title: Plant biotechnology
  doi: 10.5511/plantbiotechnology.27.297
– volume: 9
  year: 2009
  ident: 60803_CR66
  publication-title: BMC evolutionary biology
  doi: 10.1186/1471-2148-9-130
– volume: 25
  start-page: 1253
  year: 2008
  ident: 60803_CR100
  publication-title: Molecular biology and evolution
  doi: 10.1093/molbev/msn083
– volume: 190
  start-page: 62
  year: 2012
  ident: 60803_CR9
  publication-title: Plant science
  doi: 10.1016/j.plantsci.2012.04.001
– volume: 25
  start-page: 1451
  year: 2009
  ident: 60803_CR96
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btp187
– ident: 60803_CR75
– volume: 7
  start-page: 5
  year: 1991
  ident: 60803_CR3
  publication-title: The molecular biology of plastids
  doi: 10.1016/B978-0-12-715007-9.50009-8
– ident: 60803_CR47
  doi: 10.1101/gr.111955.110
– volume: 29
  start-page: 521
  year: 2011
  ident: 60803_CR84
  publication-title: Nature biotechnology
  doi: 10.1038/nbt.1860
– volume: 32
  start-page: W273
  year: 2004
  ident: 60803_CR90
  publication-title: Nucleic acids research
  doi: 10.1093/nar/gkh458
– volume: 28
  start-page: 1647
  year: 2012
  ident: 60803_CR85
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/bts199
– volume: 23
  start-page: 2175
  year: 2006
  ident: 60803_CR72
  publication-title: Molecular biology and evolution
  doi: 10.1093/molbev/msl089
– volume: 339
  start-page: 225
  year: 1993
  ident: 60803_CR37
  publication-title: Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences
  doi: 10.1098/rstb.1993.0020
– volume: 6
  start-page: e20596
  year: 2011
  ident: 60803_CR55
  publication-title: PloS one
  doi: 10.1371/journal.pone.0020596
– ident: 60803_CR4
  doi: 10.1079/9780851999043.0000
– volume: 8
  year: 2018
  ident: 60803_CR44
  publication-title: Scientific Reports
  doi: 10.1038/s41598-018-20189-4
– volume: 7
  year: 2007
  ident: 60803_CR7
  publication-title: BMC Plant Biology
  doi: 10.1186/1471-2229-7-57
– volume: 171
  start-page: 154
  year: 2013
  ident: 60803_CR103
  publication-title: Botanical Journal of the Linnean Society
  doi: 10.1111/j.1095-8339.2012.01311.x
– volume: 6
  start-page: 283
  year: 1999
  ident: 60803_CR54
  publication-title: DNA research
  doi: 10.1093/dnares/6.5.283
– volume: 16
  start-page: 4972
  year: 2007
  ident: 60803_CR59
  publication-title: Molecular Ecology
  doi: 10.1111/j.1365-294X.2007.03585.x
– volume: 2
  start-page: 3
  year: 2010
  ident: 60803_CR13
  publication-title: Trends in Evolutionary Biology
  doi: 10.4081/eb.2010.e3
– volume: 7
  start-page: e36869
  year: 2012
  ident: 60803_CR62
  publication-title: PloS one
  doi: 10.1371/journal.pone.0036869
– volume: 22
  start-page: 27
  year: 1994
  ident: 60803_CR106
  publication-title: Washington Geology
– volume: 5
  start-page: 696
  year: 2015
  ident: 60803_CR52
  publication-title: Frontiers in plant science
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Snippet Plantago ovata (Plantaginaceae) is an economically and medicinally important species, however, least is known about its genomics and evolution. Here, we report...
Plantago ovata (Plantaginaceae) is an economically and medicinally important species, however, least is known about its genomics and evolution. Here, we report...
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StartPage 3881
SubjectTerms 45
45/23
631/208/212/748
631/449/2491
Divergence
Evolution, Molecular
Genes
Genome, Plant - genetics
Genomes
Genomics
Humanities and Social Sciences
Inverted repeat
Inverted Repeat Sequences - genetics
MatK gene
Medicinal plants
Microsatellites
multidisciplinary
Nucleotide sequence
Phylogenetics
Phylogeny
Plantaginaceae
Plantago - cytology
Plantago - genetics
Plantago ovata
Plastids - genetics
RbcL gene
rRNA
Science
Science (multidisciplinary)
Species
tRNA
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Title Expanded inverted repeat region with large scale inversion in the first complete plastid genome sequence of Plantago ovata
URI https://link.springer.com/article/10.1038/s41598-020-60803-y
https://www.ncbi.nlm.nih.gov/pubmed/32127603
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https://pubmed.ncbi.nlm.nih.gov/PMC7054531
Volume 10
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