A transcriptome-wide analysis deciphers distinct roles of G1 cyclins in temporal organization of the yeast cell cycle
Oscillating gene expression is crucial for correct timing and progression through cell cycle. In Saccharomyces cerevisiae , G1 cyclins Cln1–3 are essential drivers of the cell cycle and have an important role for temporal fine-tuning. We measured time-resolved transcriptome-wide gene expression for...
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Published in | Scientific reports Vol. 9; no. 1; p. 3343 |
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Main Authors | , , , , , |
Format | Journal Article |
Language | English |
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04.03.2019
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Abstract | Oscillating gene expression is crucial for correct timing and progression through cell cycle. In
Saccharomyces cerevisiae
, G1 cyclins Cln1–3 are essential drivers of the cell cycle and have an important role for temporal fine-tuning. We measured time-resolved transcriptome-wide gene expression for wild type and cyclin single and double knockouts over cell cycle with and without osmotic stress. Clustering of expression profiles, peak time detection of oscillating genes, integration with transcription factor network dynamics, and assignment to cell cycle phases allowed us to quantify the effect of genetic or stress perturbations on the duration of cell cycle phases. Cln1 and Cln2 showed functional differences, especially affecting later phases. Deletion of Cln3 led to a delay of START followed by normal progression through later phases. Our data and network analysis suggest mutual effects of cyclins with the transcriptional regulators SBF and MBF. |
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AbstractList | Oscillating gene expression is crucial for correct timing and progression through cell cycle. In
Saccharomyces cerevisiae
, G1 cyclins Cln1–3 are essential drivers of the cell cycle and have an important role for temporal fine-tuning. We measured time-resolved transcriptome-wide gene expression for wild type and cyclin single and double knockouts over cell cycle with and without osmotic stress. Clustering of expression profiles, peak time detection of oscillating genes, integration with transcription factor network dynamics, and assignment to cell cycle phases allowed us to quantify the effect of genetic or stress perturbations on the duration of cell cycle phases. Cln1 and Cln2 showed functional differences, especially affecting later phases. Deletion of Cln3 led to a delay of START followed by normal progression through later phases. Our data and network analysis suggest mutual effects of cyclins with the transcriptional regulators SBF and MBF. Oscillating gene expression is crucial for correct timing and progression through cell cycle. In Saccharomyces cerevisiae, G1 cyclins Cln1–3 are essential drivers of the cell cycle and have an important role for temporal fine-tuning. We measured time-resolved transcriptome-wide gene expression for wild type and cyclin single and double knockouts over cell cycle with and without osmotic stress. Clustering of expression profiles, peak time detection of oscillating genes, integration with transcription factor network dynamics, and assignment to cell cycle phases allowed us to quantify the effect of genetic or stress perturbations on the duration of cell cycle phases. Cln1 and Cln2 showed functional differences, especially affecting later phases. Deletion of Cln3 led to a delay of START followed by normal progression through later phases. Our data and network analysis suggest mutual effects of cyclins with the transcriptional regulators SBF and MBF. Abstract Oscillating gene expression is crucial for correct timing and progression through cell cycle. In Saccharomyces cerevisiae , G1 cyclins Cln1–3 are essential drivers of the cell cycle and have an important role for temporal fine-tuning. We measured time-resolved transcriptome-wide gene expression for wild type and cyclin single and double knockouts over cell cycle with and without osmotic stress. Clustering of expression profiles, peak time detection of oscillating genes, integration with transcription factor network dynamics, and assignment to cell cycle phases allowed us to quantify the effect of genetic or stress perturbations on the duration of cell cycle phases. Cln1 and Cln2 showed functional differences, especially affecting later phases. Deletion of Cln3 led to a delay of START followed by normal progression through later phases. Our data and network analysis suggest mutual effects of cyclins with the transcriptional regulators SBF and MBF. |
ArticleNumber | 3343 |
Author | Tummler, Katja Flöttmann, Max Teufel, Lotte Klipp, Edda Herrmann, Andreas Barkai, Naama |
Author_xml | – sequence: 1 givenname: Lotte surname: Teufel fullname: Teufel, Lotte organization: Theoretical Biophysics, Humboldt-Universität zu Berlin, Molecular Biophysics, Humboldt-Universität zu Berlin – sequence: 2 givenname: Katja surname: Tummler fullname: Tummler, Katja organization: Theoretical Biophysics, Humboldt-Universität zu Berlin – sequence: 3 givenname: Max surname: Flöttmann fullname: Flöttmann, Max organization: Theoretical Biophysics, Humboldt-Universität zu Berlin – sequence: 4 givenname: Andreas surname: Herrmann fullname: Herrmann, Andreas organization: Molecular Biophysics, Humboldt-Universität zu Berlin – sequence: 5 givenname: Naama surname: Barkai fullname: Barkai, Naama organization: Weizmann Institute of Science – sequence: 6 givenname: Edda orcidid: 0000-0002-0567-7075 surname: Klipp fullname: Klipp, Edda email: edda.klipp@rz.hu-berlin.de organization: Theoretical Biophysics, Humboldt-Universität zu Berlin |
BackLink | https://www.ncbi.nlm.nih.gov/pubmed/30833602$$D View this record in MEDLINE/PubMed |
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CitedBy_id | crossref_primary_10_1128_mbio_01420_22 crossref_primary_10_1016_j_cell_2024_02_014 crossref_primary_10_1038_s41467_022_35151_2 crossref_primary_10_3389_fmolb_2022_1057232 crossref_primary_10_1093_g3journal_jkac157 crossref_primary_10_1016_j_heliyon_2023_e13101 crossref_primary_10_7717_peerj_10794 |
Cites_doi | 10.1038/nmeth.1778 10.1101/gad.7.5.833 10.1038/nature06955 10.1016/0014-4827(77)90154-9 10.1091/mbc.e03-11-0794 10.1101/gad.8.9.1058 10.1016/0092-8674(90)90503-7 10.1126/science.8372350 10.1126/science.1075090 10.1534/genetics.104.029587 10.1038/35054095 10.4161/cc.8.2.7543 10.1534/genetics.113.152595 10.1016/0092-8674(89)90768-X 10.15252/msb.20145345 10.1091/mbc.12.1.53 10.1002/j.1460-2075.1993.tb06222.x 10.1073/pnas.1314810111 10.1016/j.molcel.2006.06.025 10.1038/342830a0 10.1128/MCB.23.14.4826-4840.2003 10.1016/j.cell.2004.05.025 10.1128/MCB.14.7.4779 10.1126/science.272.5261.560 10.1038/369242a0 10.1016/j.molcel.2011.06.024 10.1038/353737a0 10.1371/annotation/d0132de3-56ca-4258-9119-bdab0ceb2cff 10.1002/j.1460-2075.1988.tb03332.x 10.1038/sj.onc.1208606 10.1073/pnas.0305937101 10.4161/cc.21505 10.1016/j.molcel.2011.06.025 10.1128/MCB.01279-14 10.1002/2211-5463.12157 10.1016/j.molcel.2007.04.023 10.1128/MCB.8.11.4675 10.1016/j.cell.2010.03.021 10.1016/S1097-2765(00)80114-8 10.1371/journal.pcbi.1005230 10.1002/j.1460-2075.1996.tb00880.x 10.1016/j.cell.2004.05.024 10.1038/nature06072 10.1128/MCB.22.12.4402-4418.2002 10.1016/0092-8674(93)90254-N 10.1016/0092-8674(93)90722-3 10.1016/0014-4827(73)90424-2 10.1016/0092-8674(91)90444-4 10.1128/MCB.13.2.1013 10.1101/gad.1034302 10.1038/75556 10.1023/A:1009872403440 10.1093/nar/gku1092 10.1073/pnas.1120991110 10.1038/nature07118 10.1016/j.tcb.2013.03.002 10.1038/nature14908 10.1016/0092-8674(90)90361-H 10.1128/MCB.16.6.2647 10.1038/sj.emboj.7600022 10.1371/journal.pcbi.0030064 10.1046/j.1365-2958.2001.02297.x 10.1128/MCB.13.9.5659 10.1091/mbc.9.12.3273 10.1128/MCB.00909-10 10.1038/35050543 10.1038/ncb1174 10.1186/1471-2105-7-113 10.1093/nar/gkr1029 10.1093/nar/gkt1015 10.1016/j.cub.2012.02.041 10.1002/msb.134886 10.1101/gad.1450606.identify 10.1126/science.278.5337.455 |
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References | Li, Long, Lu, Ouyang, Tang (CR56) 2004; 101 Siegmund, Nasmyth (CR63) 1996; 16 Ashburner (CR31) 2000; 25 Costanzo (CR70) 2004; 117 Chang, Herskowitz (CR64) 1990; 63 Koch, Moll, Neuberg, Ahorn, Nasmyth (CR12) 1993; 261 CR37 Barik, Ball, Peccoud, Tyson (CR58) 2016; 12 CR35 Skotheim, Di Talia, Siggia, Cross (CR14) 2008; 454 Alexander (CR33) 2001; 12 Orlando (CR41) 2008; 453 Pramila, Miles, GuhaThakurta, Jemiolo, Breeden (CR71) 2002; 16 De Bruin, McDonald, Kalashnikova, Yates, Wittenberg (CR51) 2004; 117 CR30 Lowndes Noel (CR44) 1991; 353 CR73 González-Novo (CR76) 2015; 35 Maeda, Wurgler-Murphy, Saito (CR32) 1994; 369 Quilis, Igual (CR60) 2012; 11 Igual, Johnson, Johnston (CR45) 1996; 15 Wittenberg, Sugimoto, Reed (CR47) 1990; 62 Chen (CR55) 2004; 15 Eser, Falleur-Fettig, Johnson, Skotheim (CR40) 2011; 43 Cross, Hoek, Mckinney, Tinkelenberg (CR48) 1994; 14 Richardson, Wittenberg, Cross, Reed (CR7) 1989; 59 Tyers, Futcher (CR22) 1993; 13 Nasmyth, Dirick (CR38) 1991; 66 Harashima, Dissmeyer, Schnittger (CR3) 2013; 23 Ferrezuelo, Aldea, Futcher (CR39) 2009; 8 CR49 Bucking-Throm, Duntze, Hartwell, Manneys (CR17) 1973; 76 Vergés, Colomina, Garí, Gallego, Aldea (CR8) 2007; 26 Johnston, Pringle, Hartwell (CR36) 1977; 105 Oehlen, Cross (CR66) 1994; 8 Hadwiger, Wittenberg, Richardson, De Barros Lopes, Reed (CR6) 1989; 86 Queralt, Igual (CR13) 2004; 168 Haase, Wittenberg (CR74) 2014; 196 Yaakov, Bell, Hohmann, Engelberg (CR34) 2003; 23 Guo, Bernard, Orlando, Haase, Hartemink (CR43) 2013; 110 Bellí, Garí, Aldea, Herrero (CR19) 2001; 39 Benton, Tinkelenberg, Jean, Plump, Cross (CR53) 1993; 12 Amon, Tyers, Futcher, Nasmyth (CR62) 1993; 74 CR16 Andrews, Herskowitz (CR11) 1989; 342 Talia, Skotheim, Bean, Siggia, Cross (CR24) 2007; 448 Barberis, Klipp, Vanoni, Alberghina (CR57) 2007; 3 Schneider, Yang, Futcher (CR15) 1996; 272 Santos, Wernersson, Jensen (CR26) 2014; 43 Wang, Garí, Vergés, Gallego, Aldea (CR9) 2004; 23 de Bruin (CR72) 2006; 23 Iyer (CR46) 2001; 409 Escoté, Zapater, Clotet, Posas (CR18) 2004; 6 Wittenberg, Reed (CR52) 2005; 24 Eriksson, Ganguli, Clark (CR75) 2011; 31 Cross (CR4) 1988; 8 Quilis, Igual (CR59) 2017; 7 Nash, Tokiwa, Anand, Erickson, Futcher (CR5) 1988; 7 Wijnen, Landman, Futcher (CR50) 2002; 22 Haase, Reed (CR1) 1999; 401 Lee (CR42) 2002; 298 Futcher (CR68) 1999; 86 Liebermeister (CR29) 2014; 111 Spellman (CR28) 1998; 9 Haase, Winey, Reed (CR54) 2001; 3 Harris, Lee, Farmer, Lowndes, de Bruin (CR61) 2013; 8 Valdivieso, Sugimoto, Jahng, Fernandes, Wittenberg (CR65) 1993; 13 CR25 Soifer, Barkai (CR23) 2014; 10 Kivioja (CR69) 2011; 9 Schmoller, Turner, Koivomägi, Skotheim (CR10) 2015; 526 Peter, Gartner, Horecka, Ammerer, Herskowitx (CR21) 1993; 73 Lu, Cross (CR2) 2010; 141 Doncic, Falleur-Fettig, Skotheim (CR67) 2011; 43 McKinney, Chang, Heintz, Cross (CR20) 1993; 7 Cho (CR27) 1998; 2 LJWM Oehlen (39850_CR66) 1994; 8 H Harashima (39850_CR3) 2013; 23 BJ Andrews (39850_CR11) 1989; 342 TI Lee (39850_CR42) 2002; 298 JA Hadwiger (39850_CR6) 1989; 86 F Chang (39850_CR64) 1990; 63 39850_CR49 MR Harris (39850_CR61) 2013; 8 SB Haase (39850_CR54) 2001; 3 A Santos (39850_CR26) 2014; 43 FR Cross (39850_CR48) 1994; 14 G Johnston (39850_CR36) 1977; 105 BL Schneider (39850_CR15) 1996; 272 KM Schmoller (39850_CR10) 2015; 526 F Ferrezuelo (39850_CR39) 2009; 8 G Yaakov (39850_CR34) 2003; 23 D Barik (39850_CR58) 2016; 12 R Nash (39850_CR5) 1988; 7 U Eser (39850_CR40) 2011; 43 M Barberis (39850_CR57) 2007; 3 M Costanzo (39850_CR70) 2004; 117 SB Haase (39850_CR74) 2014; 196 SD Talia (39850_CR24) 2007; 448 G Bellí (39850_CR19) 2001; 39 39850_CR16 C Wittenberg (39850_CR47) 1990; 62 RJ Cho (39850_CR27) 1998; 2 X Escoté (39850_CR18) 2004; 6 VR Iyer (39850_CR46) 2001; 409 I Quilis (39850_CR59) 2017; 7 E Vergés (39850_CR8) 2007; 26 T Pramila (39850_CR71) 2002; 16 RF Siegmund (39850_CR63) 1996; 16 H Wang (39850_CR9) 2004; 23 H Wijnen (39850_CR50) 2002; 22 T Kivioja (39850_CR69) 2011; 9 C Koch (39850_CR12) 1993; 261 JC Igual (39850_CR45) 1996; 15 SB Haase (39850_CR1) 1999; 401 H Richardson (39850_CR7) 1989; 59 A González-Novo (39850_CR76) 2015; 35 X Guo (39850_CR43) 2013; 110 P Spellman (39850_CR28) 1998; 9 E Bucking-Throm (39850_CR17) 1973; 76 39850_CR25 M Peter (39850_CR21) 1993; 73 M Ashburner (39850_CR31) 2000; 25 39850_CR73 I Soifer (39850_CR23) 2014; 10 39850_CR30 PR Eriksson (39850_CR75) 2011; 31 C Wittenberg (39850_CR52) 2005; 24 F Li (39850_CR56) 2004; 101 K Nasmyth (39850_CR38) 1991; 66 RAM De Bruin (39850_CR51) 2004; 117 DA Orlando (39850_CR41) 2008; 453 JD McKinney (39850_CR20) 1993; 7 39850_CR37 FR Cross (39850_CR4) 1988; 8 MR Alexander (39850_CR33) 2001; 12 W Liebermeister (39850_CR29) 2014; 111 I Quilis (39850_CR60) 2012; 11 B Futcher (39850_CR68) 1999; 86 KC Chen (39850_CR55) 2004; 15 39850_CR35 M Tyers (39850_CR22) 1993; 13 A Amon (39850_CR62) 1993; 74 MH Valdivieso (39850_CR65) 1993; 13 T Maeda (39850_CR32) 1994; 369 A Doncic (39850_CR67) 2011; 43 F Lowndes Noel (39850_CR44) 1991; 353 BK Benton (39850_CR53) 1993; 12 JM Skotheim (39850_CR14) 2008; 454 E Queralt (39850_CR13) 2004; 168 RAM de Bruin (39850_CR72) 2006; 23 Y Lu (39850_CR2) 2010; 141 |
References_xml | – ident: CR49 – volume: 9 start-page: 72 year: 2011 end-page: 74 ident: CR69 article-title: Counting absolute numbers of molecules using unique molecular identifiers publication-title: Nat. Methods doi: 10.1038/nmeth.1778 contributor: fullname: Kivioja – volume: 7 start-page: 833 year: 1993 end-page: 843 ident: CR20 article-title: Negative regulation of FAR1 at the Start of the cell cycle publication-title: Genes Dev. doi: 10.1101/gad.7.5.833 contributor: fullname: Cross – volume: 453 start-page: 944 year: 2008 end-page: 947 ident: CR41 article-title: Global control of cell-cycle transcription by coupled CDK and network oscillators publication-title: Nature doi: 10.1038/nature06955 contributor: fullname: Orlando – ident: CR16 – volume: 105 start-page: 79 year: 1977 end-page: 98 ident: CR36 article-title: Coordination of growth with cell division in the yeast publication-title: Exp. Cell Res. doi: 10.1016/0014-4827(77)90154-9 contributor: fullname: Hartwell – volume: 86 start-page: 6255 year: 1989 end-page: 6259 ident: CR6 article-title: 1. A family of cyclin homologs that control the G1 phase in yeast publication-title: Genetics contributor: fullname: Reed – volume: 15 start-page: 3841 year: 2004 end-page: 3862 ident: CR55 article-title: Integrative Analysis of Cell Cycle Control in Budding Yeast publication-title: Mol. Biol. Cell doi: 10.1091/mbc.e03-11-0794 contributor: fullname: Chen – volume: 8 start-page: 1058 year: 1994 end-page: 1070 ident: CR66 article-title: G1 cyclins CLN1 and CLN2 repress the mating factor response pathway at start in the yeast cell cycle publication-title: Genes Dev. doi: 10.1101/gad.8.9.1058 contributor: fullname: Cross – volume: 63 start-page: 999 year: 1990 end-page: 1011 ident: CR64 article-title: Identification of a gene necessary for cell cycle arrest by a negative growth factor of yeast: FAR1 is an inhibitor of a G1 cyclin, CLN2 publication-title: Cell doi: 10.1016/0092-8674(90)90503-7 contributor: fullname: Herskowitz – volume: 261 start-page: 1551 year: 1993 end-page: 7 ident: CR12 article-title: A role for the transcription factors Mbp1 and Swi4 in progression from G1 to S phase publication-title: Science (80-.). doi: 10.1126/science.8372350 contributor: fullname: Nasmyth – volume: 298 start-page: 799 year: 2002 end-page: 804 ident: CR42 article-title: Transcriptional regulatory networks in Saccharomyces cerevisiae publication-title: Science (80-.). doi: 10.1126/science.1075090 contributor: fullname: Lee – volume: 168 start-page: 129 year: 2004 end-page: 140 ident: CR13 article-title: Functional distinction between Cln1p.and Cln2p cyclins in the control of the Saccharomyces cerevinae mitotic cycle publication-title: Genetics doi: 10.1534/genetics.104.029587 contributor: fullname: Igual – volume: 409 start-page: 533 year: 2001 end-page: 538 ident: CR46 article-title: Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF publication-title: Nature doi: 10.1038/35054095 contributor: fullname: Iyer – ident: CR35 – volume: 8 start-page: 239 year: 2009 end-page: 252 ident: CR39 article-title: Bck2 is a phase-independent activator of cell cycle-regulated genes in yeast publication-title: Cell Cycle doi: 10.4161/cc.8.2.7543 contributor: fullname: Futcher – volume: 196 start-page: 65 year: 2014 end-page: 90 ident: CR74 article-title: Topology and control of the cell-cycle-regulated transcriptional circuitry publication-title: Genetics doi: 10.1534/genetics.113.152595 contributor: fullname: Wittenberg – ident: CR25 – volume: 59 start-page: 1127 year: 1989 end-page: 1133 ident: CR7 article-title: An essential G1 function for cyclin- like proteins in yeast publication-title: Cell doi: 10.1016/0092-8674(89)90768-X contributor: fullname: Reed – volume: 10 start-page: 761 year: 2014 ident: CR23 article-title: Systematic identification of cell size regulators in budding yeast publication-title: Mol. Syst. Biol. doi: 10.15252/msb.20145345 contributor: fullname: Barkai – volume: 12 start-page: 53 year: 2001 end-page: 62 ident: CR33 article-title: Regulation of cell cycle progression by Swe1p and Hog1p following hypertonic stress publication-title: Mol. Biol. Cell doi: 10.1091/mbc.12.1.53 contributor: fullname: Alexander – volume: 12 start-page: 5267 year: 1993 end-page: 5275 ident: CR53 article-title: Genetic analysis of Cln/Cdc28 regulation of cell morphogenesis in budding yeast publication-title: EMBO J. doi: 10.1002/j.1460-2075.1993.tb06222.x contributor: fullname: Cross – volume: 111 start-page: 8488 year: 2014 end-page: 93 ident: CR29 article-title: Visual account of protein investment in cellular functions publication-title: Proc. Natl. Acad. Sci. USA doi: 10.1073/pnas.1314810111 contributor: fullname: Liebermeister – volume: 23 start-page: 483 year: 2006 end-page: 496 ident: CR72 article-title: Constraining G1-Specific Transcription to Late G1 Phase: The MBF-Associated Corepressor Nrm1 Acts via Negative Feedback publication-title: Mol. Cell doi: 10.1016/j.molcel.2006.06.025 contributor: fullname: de Bruin – volume: 342 start-page: 830 year: 1989 end-page: 833 ident: CR11 article-title: The yeast SWI4 protein contains a motif present in developmental regulators and is part of a complex involved in cell-cycle-dependent transcription publication-title: Nature doi: 10.1038/342830a0 contributor: fullname: Herskowitz – volume: 23 start-page: 4826 year: 2003 end-page: 4840 ident: CR34 article-title: Combination of Two Activating Mutations in One HOG1 Gene Forms Hyperactive Enzymes That Induce Growth Arrest publication-title: Mol. Cell. Biol. doi: 10.1128/MCB.23.14.4826-4840.2003 contributor: fullname: Engelberg – volume: 117 start-page: 887 year: 2004 end-page: 898 ident: CR51 article-title: Cln3 activates G1-specific transcription via phosphorylation of the SBF bound repressor Whi5 publication-title: Cell doi: 10.1016/j.cell.2004.05.025 contributor: fullname: Wittenberg – volume: 14 start-page: 4779 year: 1994 end-page: 4787 ident: CR48 article-title: Role of Swi4 in Cell Cycle Regulation of CLN2 Expression publication-title: Mol. Cell. Biol. doi: 10.1128/MCB.14.7.4779 contributor: fullname: Tinkelenberg – volume: 272 start-page: 560 year: 1996 end-page: 562 ident: CR15 article-title: Linkage of replication to start by the Cdk inhibitor Sic1 publication-title: Science (80-.). doi: 10.1126/science.272.5261.560 contributor: fullname: Futcher – volume: 369 start-page: 242 year: 1994 end-page: 245 ident: CR32 article-title: A two-component system that regulates an osmosensing MAP kinase cascade in yeast publication-title: Nature doi: 10.1038/369242a0 contributor: fullname: Saito – volume: 43 start-page: 515 year: 2011 end-page: 527 ident: CR40 article-title: Commitment to a Cellular Transition Precedes Genome-wide Transcriptional Change publication-title: Mol. Cell doi: 10.1016/j.molcel.2011.06.024 contributor: fullname: Skotheim – volume: 353 start-page: 737 year: 1991 end-page: 740 ident: CR44 article-title: J. A. L.. J. L. H. Coordination of expression of DNA synthesis genes in budding yeast by a cell-cycle regulated trans factor publication-title: Nature doi: 10.1038/353737a0 contributor: fullname: Lowndes Noel – volume: 8 start-page: 1 year: 2013 end-page: 7 ident: CR61 article-title: Binding Specificity of the G1/S Transcriptional Regulators in Budding Yeast publication-title: PLoS One doi: 10.1371/annotation/d0132de3-56ca-4258-9119-bdab0ceb2cff contributor: fullname: de Bruin – volume: 7 start-page: 4335 year: 1988 end-page: 46 ident: CR5 article-title: The WHI1+ gene of Saccharomyces cerevisiae tethers cell division to cell size and is a cyclin homolog publication-title: EMBO J. doi: 10.1002/j.1460-2075.1988.tb03332.x contributor: fullname: Futcher – volume: 24 start-page: 2746 year: 2005 end-page: 2755 ident: CR52 article-title: Cell cycle-dependent transcription in yeast: Promoters, transcription factors, and transcriptomes publication-title: Oncogene doi: 10.1038/sj.onc.1208606 contributor: fullname: Reed – volume: 101 start-page: 4781 year: 2004 end-page: 4786 ident: CR56 article-title: The yeast cell-cycle network is robustly designed publication-title: Proc. Natl. Acad. Sci. doi: 10.1073/pnas.0305937101 contributor: fullname: Tang – volume: 11 start-page: 3117 year: 2012 end-page: 3131 ident: CR60 article-title: Molecular basis of the functional distinction between Cln1 and Cln2 cyclins publication-title: Cell Cycle doi: 10.4161/cc.21505 contributor: fullname: Igual – volume: 43 start-page: 528 year: 2011 end-page: 539 ident: CR67 article-title: Distinct Interactions Select and Maintain a Specific Cell Fate publication-title: Mol. Cell doi: 10.1016/j.molcel.2011.06.025 contributor: fullname: Skotheim – volume: 35 start-page: MCB.01279 year: 2015 end-page: 14 ident: CR76 article-title: Hog1 targets Whi5 and Msa1 transcription factors to down-regulate cyclin expression upon stress publication-title: Mol. Cell. Biol. doi: 10.1128/MCB.01279-14 contributor: fullname: González-Novo – volume: 7 start-page: 74 year: 2017 end-page: 87 ident: CR59 article-title: A comparative study of the degradation of yeast cyclins Cln1 and Cln2 publication-title: FEBS Open Bio doi: 10.1002/2211-5463.12157 contributor: fullname: Igual – volume: 26 start-page: 649 year: 2007 end-page: 662 ident: CR8 article-title: Cyclin Cln3 Is Retained at the ER and Released by the J Chaperone Ydj1 in Late G1 to Trigger Cell Cycle Entry publication-title: Mol. Cell doi: 10.1016/j.molcel.2007.04.023 contributor: fullname: Aldea – volume: 8 start-page: 4675 year: 1988 end-page: 84 ident: CR4 article-title: DAF1, a mutant gene affecting size control, pheromone arrest, and cell cycle kinetics of Saccharomyces cerevisiae publication-title: Mol. Cell. Biol. doi: 10.1128/MCB.8.11.4675 contributor: fullname: Cross – volume: 141 start-page: 268 year: 2010 end-page: 279 ident: CR2 article-title: Periodic cyclin-cdk activity entrains an autonomous cdc14 release oscillator publication-title: Cell doi: 10.1016/j.cell.2010.03.021 contributor: fullname: Cross – volume: 2 start-page: 65 year: 1998 end-page: 73 ident: CR27 article-title: A genome-wide transcriptional analysis of the mitotic cell cycle publication-title: Mol. Cell doi: 10.1016/S1097-2765(00)80114-8 contributor: fullname: Cho – ident: CR37 – volume: 12 start-page: e1005230 year: 2016 ident: CR58 article-title: A Stochastic Model of the Yeast Cell Cycle Reveals Roles for Feedback Regulation in Limiting Cellular Variability publication-title: PLOS Comput. Biol. doi: 10.1371/journal.pcbi.1005230 contributor: fullname: Tyson – ident: CR30 – volume: 15 start-page: 5001 year: 1996 end-page: 13 ident: CR45 article-title: Coordinated regulation of gene expression by the cell cycle transcription factor Swi4 and the protein kinase C MAP kinase pathway for yeast cell integrity publication-title: EMBO J. doi: 10.1002/j.1460-2075.1996.tb00880.x contributor: fullname: Johnston – volume: 117 start-page: 899 year: 2004 end-page: 913 ident: CR70 article-title: CDK activity antagonizes Whi5, an inhibitor of G1/S transcription in yeast publication-title: Cell doi: 10.1016/j.cell.2004.05.024 contributor: fullname: Costanzo – volume: 448 start-page: 947 year: 2007 end-page: 951 ident: CR24 article-title: The effects of molecular noise and size control on variability in the budding yeast cell cycle publication-title: Nature doi: 10.1038/nature06072 contributor: fullname: Cross – volume: 22 start-page: 4402 year: 2002 end-page: 18 ident: CR50 article-title: The G(1) cyclin Cln3 promotes cell cycle entry via the transcription factor Swi6 publication-title: Mol. Cell. Biol. doi: 10.1128/MCB.22.12.4402-4418.2002 contributor: fullname: Futcher – volume: 73 start-page: 747 year: 1993 end-page: 760 ident: CR21 article-title: FAR1 Links the Signal Transduction Pathway to the Cell Cycle Machinery in Yeast publication-title: Cell doi: 10.1016/0092-8674(93)90254-N contributor: fullname: Herskowitx – volume: 74 start-page: 993 year: 1993 end-page: 1007 ident: CR62 article-title: Mechanisms that help the yeast cell cycle clock tick: G2 cyclins transcriptionally activate G2 cyclins and repress G1 cyclins publication-title: Cell doi: 10.1016/0092-8674(93)90722-3 contributor: fullname: Nasmyth – volume: 76 start-page: 99 year: 1973 end-page: 110 ident: CR17 article-title: Reversible arrest of haploid yeast cells at the initiation of DNA synthesis by a diffusible sex factor publication-title: Exp. Cell Res. doi: 10.1016/0014-4827(73)90424-2 contributor: fullname: Manneys – volume: 66 start-page: 995 year: 1991 end-page: 1013 ident: CR38 article-title: The role of SWI4 and SWI6 in the activity of G1 cyclins in yeast publication-title: Cell doi: 10.1016/0092-8674(91)90444-4 contributor: fullname: Dirick – volume: 13 start-page: 1013 year: 1993 end-page: 22 ident: CR65 article-title: FAR1 is required for posttranscriptional regulation of CLN2 gene expression in response to mating pheromone publication-title: Mol Cell Biol doi: 10.1128/MCB.13.2.1013 contributor: fullname: Wittenberg – volume: 16 start-page: 3034 year: 2002 end-page: 3045 ident: CR71 article-title: Conserved homeodomain proteins interact with MADS box protein Mcm1 to restrict ECB-dependent transcription to the M/G1 phase of the cell cycle publication-title: Genes Dev. doi: 10.1101/gad.1034302 contributor: fullname: Breeden – volume: 25 start-page: 25 year: 2000 end-page: 29 ident: CR31 article-title: Gene Ontology: tool for the unification of biology publication-title: Nat. Genet. doi: 10.1038/75556 contributor: fullname: Ashburner – volume: 86 start-page: 79 year: 1999 end-page: 86 ident: CR68 article-title: Cell cycle synchronization publication-title: Methods cell Sci. doi: 10.1023/A:1009872403440 contributor: fullname: Futcher – volume: 43 start-page: D1140 year: 2014 end-page: D1144 ident: CR26 article-title: Cyclebase 3.0: A multi-organism database on cell-cycle regulation and phenotypes publication-title: Nucleic Acids Res. doi: 10.1093/nar/gku1092 contributor: fullname: Jensen – volume: 110 start-page: E968 year: 2013 end-page: 77 ident: CR43 article-title: Branching process deconvolution algorithm reveals a detailed cell-cycle transcription program publication-title: Proc. Natl. Acad. Sci. USA doi: 10.1073/pnas.1120991110 contributor: fullname: Hartemink – volume: 454 start-page: 291 year: 2008 end-page: 296 ident: CR14 article-title: Positive feedback of G1 cyclins ensures coherent cell cycle entry publication-title: Nature doi: 10.1038/nature07118 contributor: fullname: Cross – ident: CR73 – volume: 23 start-page: 345 year: 2013 end-page: 356 ident: CR3 article-title: Cell cycle control across the eukaryotic kingdom publication-title: Trends Cell Biol. doi: 10.1016/j.tcb.2013.03.002 contributor: fullname: Schnittger – volume: 526 start-page: 268 year: 2015 end-page: 272 ident: CR10 article-title: Dilution of the cell cycle inhibitor Whi5 controls budding-yeast cell size publication-title: Nature doi: 10.1038/nature14908 contributor: fullname: Skotheim – volume: 62 start-page: 225 year: 1990 end-page: 237 ident: CR47 article-title: G1- specific cyclins of S. cerevisiae: cell cycle periodicity, regulation by mating pheromones and associations with the p34CDC28 protein kinase publication-title: Cell doi: 10.1016/0092-8674(90)90361-H contributor: fullname: Reed – volume: 16 start-page: 2647 year: 1996 end-page: 2655 ident: CR63 article-title: The Saccharomyces cerevisiae Start-Specific Transcription Factor Swi4 Interacts through the Ankyrin Repeats with the Mitotic Clb2/Cdc28 Kinase and through Its Conserved Carboxy Terminus with Swi6 publication-title: Mol. Cell. Biol. doi: 10.1128/MCB.16.6.2647 contributor: fullname: Nasmyth – volume: 23 start-page: 180 year: 2004 end-page: 190 ident: CR9 article-title: Recruitment of Cdc28 by Whi3 restricts nuclear accumulation of the G1 cyclin-Cdk complex to late G1 publication-title: EMBO J. doi: 10.1038/sj.emboj.7600022 contributor: fullname: Aldea – volume: 3 start-page: 0649 year: 2007 end-page: 0666 ident: CR57 article-title: Cell Size at S Phase Initiation: an Emergent Propery of the G1/S Network publication-title: PLoS Comput. Biol. doi: 10.1371/journal.pcbi.0030064 contributor: fullname: Alberghina – volume: 39 start-page: 1022 year: 2001 end-page: 1035 ident: CR19 article-title: Osmotic stress causes a G1 cell cycle delay and downregulation of Cln3/Cdc28 activity in Saccharomyces cerevisiae publication-title: Mol. Microbiol. doi: 10.1046/j.1365-2958.2001.02297.x contributor: fullname: Herrero – volume: 401 start-page: 394 year: 1999 end-page: 397 ident: CR1 article-title: Evidence that a free-running oscillator drives G1 events in the budding yeast cell cycle publication-title: Nature contributor: fullname: Reed – volume: 13 start-page: 5659 year: 1993 end-page: 69 ident: CR22 article-title: Far1 and Fus3 link the mating pheromone signal transduction pathway to three G1-phase Cdc28 kinase complexes publication-title: Mol. Cell. Biol. doi: 10.1128/MCB.13.9.5659 contributor: fullname: Futcher – volume: 9 start-page: 3273 year: 1998 end-page: 3297 ident: CR28 article-title: Comprehensive Identification of Cell Cycle regulated Genes of the Yeast Saccharomyces cerevisiae by Microarray Hybridization publication-title: Mol. Biol. Cell doi: 10.1091/mbc.9.12.3273 contributor: fullname: Spellman – volume: 31 start-page: 557 year: 2011 end-page: 572 ident: CR75 article-title: Spt10 and Swi4 Control the Timing of Histone H2A/H2B Gene Activation in Budding Yeast publication-title: Mol. Cell. Biol. doi: 10.1128/MCB.00909-10 contributor: fullname: Clark – volume: 3 start-page: 38 year: 2001 end-page: 42 ident: CR54 article-title: Multi-step control of spindle pole body duplication by cyclin-dependent kinase publication-title: Nat. Cell Biol. doi: 10.1038/35050543 contributor: fullname: Reed – volume: 6 start-page: 997 year: 2004 end-page: 1002 ident: CR18 article-title: Hog1 mediates cell-cycle arrest in G1 phase by the dual targeting of Sic1 publication-title: Nat. Cell Biol. doi: 10.1038/ncb1174 contributor: fullname: Posas – ident: 39850_CR49 doi: 10.1186/1471-2105-7-113 – volume: 23 start-page: 345 year: 2013 ident: 39850_CR3 publication-title: Trends Cell Biol. doi: 10.1016/j.tcb.2013.03.002 contributor: fullname: H Harashima – ident: 39850_CR30 doi: 10.1093/nar/gkr1029 – volume: 66 start-page: 995 year: 1991 ident: 39850_CR38 publication-title: Cell doi: 10.1016/0092-8674(91)90444-4 contributor: fullname: K Nasmyth – volume: 111 start-page: 8488 year: 2014 ident: 39850_CR29 publication-title: Proc. Natl. Acad. Sci. USA doi: 10.1073/pnas.1314810111 contributor: fullname: W Liebermeister – volume: 110 start-page: E968 year: 2013 ident: 39850_CR43 publication-title: Proc. Natl. Acad. Sci. USA doi: 10.1073/pnas.1120991110 contributor: fullname: X Guo – volume: 12 start-page: e1005230 year: 2016 ident: 39850_CR58 publication-title: PLOS Comput. Biol. doi: 10.1371/journal.pcbi.1005230 contributor: fullname: D Barik – volume: 10 start-page: 761 year: 2014 ident: 39850_CR23 publication-title: Mol. Syst. Biol. doi: 10.15252/msb.20145345 contributor: fullname: I Soifer – volume: 11 start-page: 3117 year: 2012 ident: 39850_CR60 publication-title: Cell Cycle doi: 10.4161/cc.21505 contributor: fullname: I Quilis – volume: 13 start-page: 1013 year: 1993 ident: 39850_CR65 publication-title: Mol Cell Biol doi: 10.1128/MCB.13.2.1013 contributor: fullname: MH Valdivieso – volume: 12 start-page: 53 year: 2001 ident: 39850_CR33 publication-title: Mol. Biol. Cell doi: 10.1091/mbc.12.1.53 contributor: fullname: MR Alexander – volume: 25 start-page: 25 year: 2000 ident: 39850_CR31 publication-title: Nat. Genet. doi: 10.1038/75556 contributor: fullname: M Ashburner – volume: 12 start-page: 5267 year: 1993 ident: 39850_CR53 publication-title: EMBO J. doi: 10.1002/j.1460-2075.1993.tb06222.x contributor: fullname: BK Benton – volume: 74 start-page: 993 year: 1993 ident: 39850_CR62 publication-title: Cell doi: 10.1016/0092-8674(93)90722-3 contributor: fullname: A Amon – volume: 8 start-page: 1058 year: 1994 ident: 39850_CR66 publication-title: Genes Dev. doi: 10.1101/gad.8.9.1058 contributor: fullname: LJWM Oehlen – volume: 86 start-page: 79 year: 1999 ident: 39850_CR68 publication-title: Methods cell Sci. doi: 10.1023/A:1009872403440 contributor: fullname: B Futcher – volume: 141 start-page: 268 year: 2010 ident: 39850_CR2 publication-title: Cell doi: 10.1016/j.cell.2010.03.021 contributor: fullname: Y Lu – volume: 261 start-page: 1551 year: 1993 ident: 39850_CR12 publication-title: Science (80-.). doi: 10.1126/science.8372350 contributor: fullname: C Koch – volume: 8 start-page: 4675 year: 1988 ident: 39850_CR4 publication-title: Mol. Cell. Biol. doi: 10.1128/MCB.8.11.4675 contributor: fullname: FR Cross – volume: 22 start-page: 4402 year: 2002 ident: 39850_CR50 publication-title: Mol. Cell. Biol. doi: 10.1128/MCB.22.12.4402-4418.2002 contributor: fullname: H Wijnen – volume: 117 start-page: 887 year: 2004 ident: 39850_CR51 publication-title: Cell doi: 10.1016/j.cell.2004.05.025 contributor: fullname: RAM De Bruin – volume: 7 start-page: 74 year: 2017 ident: 39850_CR59 publication-title: FEBS Open Bio doi: 10.1002/2211-5463.12157 contributor: fullname: I Quilis – volume: 9 start-page: 3273 year: 1998 ident: 39850_CR28 publication-title: Mol. Biol. Cell doi: 10.1091/mbc.9.12.3273 contributor: fullname: P Spellman – volume: 272 start-page: 560 year: 1996 ident: 39850_CR15 publication-title: Science (80-.). doi: 10.1126/science.272.5261.560 contributor: fullname: BL Schneider – volume: 35 start-page: MCB.01279 year: 2015 ident: 39850_CR76 publication-title: Mol. Cell. Biol. doi: 10.1128/MCB.01279-14 contributor: fullname: A González-Novo – volume: 7 start-page: 4335 year: 1988 ident: 39850_CR5 publication-title: EMBO J. doi: 10.1002/j.1460-2075.1988.tb03332.x contributor: fullname: R Nash – volume: 454 start-page: 291 year: 2008 ident: 39850_CR14 publication-title: Nature doi: 10.1038/nature07118 contributor: fullname: JM Skotheim – volume: 369 start-page: 242 year: 1994 ident: 39850_CR32 publication-title: Nature doi: 10.1038/369242a0 contributor: fullname: T Maeda – volume: 15 start-page: 5001 year: 1996 ident: 39850_CR45 publication-title: EMBO J. doi: 10.1002/j.1460-2075.1996.tb00880.x contributor: fullname: JC Igual – volume: 43 start-page: D1140 year: 2014 ident: 39850_CR26 publication-title: Nucleic Acids Res. doi: 10.1093/nar/gku1092 contributor: fullname: A Santos – volume: 7 start-page: 833 year: 1993 ident: 39850_CR20 publication-title: Genes Dev. doi: 10.1101/gad.7.5.833 contributor: fullname: JD McKinney – volume: 168 start-page: 129 year: 2004 ident: 39850_CR13 publication-title: Genetics doi: 10.1534/genetics.104.029587 contributor: fullname: E Queralt – volume: 23 start-page: 4826 year: 2003 ident: 39850_CR34 publication-title: Mol. Cell. Biol. doi: 10.1128/MCB.23.14.4826-4840.2003 contributor: fullname: G Yaakov – volume: 8 start-page: 1 year: 2013 ident: 39850_CR61 publication-title: PLoS One doi: 10.1371/annotation/d0132de3-56ca-4258-9119-bdab0ceb2cff contributor: fullname: MR Harris – volume: 86 start-page: 6255 year: 1989 ident: 39850_CR6 publication-title: Genetics contributor: fullname: JA Hadwiger – volume: 3 start-page: 38 year: 2001 ident: 39850_CR54 publication-title: Nat. Cell Biol. doi: 10.1038/35050543 contributor: fullname: SB Haase – volume: 16 start-page: 3034 year: 2002 ident: 39850_CR71 publication-title: Genes Dev. doi: 10.1101/gad.1034302 contributor: fullname: T Pramila – volume: 105 start-page: 79 year: 1977 ident: 39850_CR36 publication-title: Exp. Cell Res. doi: 10.1016/0014-4827(77)90154-9 contributor: fullname: G Johnston – volume: 13 start-page: 5659 year: 1993 ident: 39850_CR22 publication-title: Mol. Cell. Biol. doi: 10.1128/MCB.13.9.5659 contributor: fullname: M Tyers – volume: 409 start-page: 533 year: 2001 ident: 39850_CR46 publication-title: Nature doi: 10.1038/35054095 contributor: fullname: VR Iyer – volume: 101 start-page: 4781 year: 2004 ident: 39850_CR56 publication-title: Proc. Natl. Acad. Sci. doi: 10.1073/pnas.0305937101 contributor: fullname: F Li – volume: 16 start-page: 2647 year: 1996 ident: 39850_CR63 publication-title: Mol. Cell. Biol. doi: 10.1128/MCB.16.6.2647 contributor: fullname: RF Siegmund – volume: 63 start-page: 999 year: 1990 ident: 39850_CR64 publication-title: Cell doi: 10.1016/0092-8674(90)90503-7 contributor: fullname: F Chang – volume: 15 start-page: 3841 year: 2004 ident: 39850_CR55 publication-title: Mol. Biol. Cell doi: 10.1091/mbc.e03-11-0794 contributor: fullname: KC Chen – volume: 453 start-page: 944 year: 2008 ident: 39850_CR41 publication-title: Nature doi: 10.1038/nature06955 contributor: fullname: DA Orlando – volume: 23 start-page: 180 year: 2004 ident: 39850_CR9 publication-title: EMBO J. doi: 10.1038/sj.emboj.7600022 contributor: fullname: H Wang – volume: 73 start-page: 747 year: 1993 ident: 39850_CR21 publication-title: Cell doi: 10.1016/0092-8674(93)90254-N contributor: fullname: M Peter – volume: 31 start-page: 557 year: 2011 ident: 39850_CR75 publication-title: Mol. Cell. Biol. doi: 10.1128/MCB.00909-10 contributor: fullname: PR Eriksson – volume: 26 start-page: 649 year: 2007 ident: 39850_CR8 publication-title: Mol. Cell doi: 10.1016/j.molcel.2007.04.023 contributor: fullname: E Vergés – volume: 39 start-page: 1022 year: 2001 ident: 39850_CR19 publication-title: Mol. Microbiol. doi: 10.1046/j.1365-2958.2001.02297.x contributor: fullname: G Bellí – ident: 39850_CR35 doi: 10.1093/nar/gkt1015 – ident: 39850_CR37 doi: 10.1016/j.cub.2012.02.041 – volume: 526 start-page: 268 year: 2015 ident: 39850_CR10 publication-title: Nature doi: 10.1038/nature14908 contributor: fullname: KM Schmoller – volume: 2 start-page: 65 year: 1998 ident: 39850_CR27 publication-title: Mol. Cell doi: 10.1016/S1097-2765(00)80114-8 contributor: fullname: RJ Cho – volume: 23 start-page: 483 year: 2006 ident: 39850_CR72 publication-title: Mol. Cell doi: 10.1016/j.molcel.2006.06.025 contributor: fullname: RAM de Bruin – volume: 43 start-page: 515 year: 2011 ident: 39850_CR40 publication-title: Mol. Cell doi: 10.1016/j.molcel.2011.06.024 contributor: fullname: U Eser – volume: 24 start-page: 2746 year: 2005 ident: 39850_CR52 publication-title: Oncogene doi: 10.1038/sj.onc.1208606 contributor: fullname: C Wittenberg – volume: 3 start-page: 0649 year: 2007 ident: 39850_CR57 publication-title: PLoS Comput. Biol. doi: 10.1371/journal.pcbi.0030064 contributor: fullname: M Barberis – volume: 342 start-page: 830 year: 1989 ident: 39850_CR11 publication-title: Nature doi: 10.1038/342830a0 contributor: fullname: BJ Andrews – volume: 14 start-page: 4779 year: 1994 ident: 39850_CR48 publication-title: Mol. Cell. Biol. doi: 10.1128/MCB.14.7.4779 contributor: fullname: FR Cross – volume: 62 start-page: 225 year: 1990 ident: 39850_CR47 publication-title: Cell doi: 10.1016/0092-8674(90)90361-H contributor: fullname: C Wittenberg – ident: 39850_CR25 doi: 10.1002/msb.134886 – volume: 8 start-page: 239 year: 2009 ident: 39850_CR39 publication-title: Cell Cycle doi: 10.4161/cc.8.2.7543 contributor: fullname: F Ferrezuelo – volume: 353 start-page: 737 year: 1991 ident: 39850_CR44 publication-title: Nature doi: 10.1038/353737a0 contributor: fullname: F Lowndes Noel – volume: 59 start-page: 1127 year: 1989 ident: 39850_CR7 publication-title: Cell doi: 10.1016/0092-8674(89)90768-X contributor: fullname: H Richardson – volume: 76 start-page: 99 year: 1973 ident: 39850_CR17 publication-title: Exp. Cell Res. doi: 10.1016/0014-4827(73)90424-2 contributor: fullname: E Bucking-Throm – volume: 448 start-page: 947 year: 2007 ident: 39850_CR24 publication-title: Nature doi: 10.1038/nature06072 contributor: fullname: SD Talia – volume: 9 start-page: 72 year: 2011 ident: 39850_CR69 publication-title: Nat. Methods doi: 10.1038/nmeth.1778 contributor: fullname: T Kivioja – volume: 298 start-page: 799 year: 2002 ident: 39850_CR42 publication-title: Science (80-.). doi: 10.1126/science.1075090 contributor: fullname: TI Lee – ident: 39850_CR73 doi: 10.1101/gad.1450606.identify – volume: 401 start-page: 394 year: 1999 ident: 39850_CR1 publication-title: Nature contributor: fullname: SB Haase – volume: 196 start-page: 65 year: 2014 ident: 39850_CR74 publication-title: Genetics doi: 10.1534/genetics.113.152595 contributor: fullname: SB Haase – volume: 43 start-page: 528 year: 2011 ident: 39850_CR67 publication-title: Mol. Cell doi: 10.1016/j.molcel.2011.06.025 contributor: fullname: A Doncic – volume: 117 start-page: 899 year: 2004 ident: 39850_CR70 publication-title: Cell doi: 10.1016/j.cell.2004.05.024 contributor: fullname: M Costanzo – ident: 39850_CR16 doi: 10.1126/science.278.5337.455 – volume: 6 start-page: 997 year: 2004 ident: 39850_CR18 publication-title: Nat. Cell Biol. doi: 10.1038/ncb1174 contributor: fullname: X Escoté |
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Snippet | Oscillating gene expression is crucial for correct timing and progression through cell cycle. In
Saccharomyces cerevisiae
, G1 cyclins Cln1–3 are essential... Oscillating gene expression is crucial for correct timing and progression through cell cycle. In Saccharomyces cerevisiae, G1 cyclins Cln1-3 are essential... Abstract Oscillating gene expression is crucial for correct timing and progression through cell cycle. In Saccharomyces cerevisiae , G1 cyclins Cln1–3 are... Oscillating gene expression is crucial for correct timing and progression through cell cycle. In Saccharomyces cerevisiae, G1 cyclins Cln1–3 are essential... |
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SubjectTerms | 14/63 38/91 631/326/193/2096 631/80/641/1655 Cell cycle Clonal deletion Cyclins Data processing Gene expression Humanities and Social Sciences multidisciplinary Osmotic stress Science Science (multidisciplinary) Yeast Yeasts |
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Title | A transcriptome-wide analysis deciphers distinct roles of G1 cyclins in temporal organization of the yeast cell cycle |
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