Oscillospira and related bacteria – From metagenomic species to metabolic features
Summary Oscillospira is an under‐studied anaerobic bacterial genus from Clostridial cluster IV that has resisted cultivation for over a century since the first time it was observed. In recent years its 16S rRNA gene was identified in several human gut microbiota studies where it was often associated...
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Published in | Environmental microbiology Vol. 19; no. 3; pp. 835 - 841 |
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Main Authors | , , |
Format | Journal Article |
Language | English |
Published |
England
Wiley Subscription Services, Inc
01.03.2017
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Subjects | |
Online Access | Get full text |
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Abstract | Summary
Oscillospira is an under‐studied anaerobic bacterial genus from Clostridial cluster IV that has resisted cultivation for over a century since the first time it was observed. In recent years its 16S rRNA gene was identified in several human gut microbiota studies where it was often associated with interesting traits, especially leanness. However, very little is known about its metabolism or physiology. Here we used nearly complete genomes derived from shot‐gun metagenomic data from the human gut to analyze Oscillospira and related bacteria. We used sequence similarity, gene neighbourhood information and manual metabolic pathway curation to decipher key metabolic features of this intriguing bacterial genus. We infer that Oscillospira species are butyrate producers, and at least some of them have the ability to utilize glucuronate, a common animal‐derived sugar that is both produced by the human host and consumed by that host in diets rich in animal products. These findings could help explain diet‐related inter‐individual variation in faecal Oscillospira levels as well as the observation that the presence of this genus is reduced in diseases that involve inflammation. |
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AbstractList | Summary Oscillospira is an under-studied anaerobic bacterial genus from Clostridial cluster IV that has resisted cultivation for over a century since the first time it was observed. In recent years its 16S rRNA gene was identified in several human gut microbiota studies where it was often associated with interesting traits, especially leanness. However, very little is known about its metabolism or physiology. Here we used nearly complete genomes derived from shot-gun metagenomic data from the human gut to analyze Oscillospira and related bacteria. We used sequence similarity, gene neighbourhood information and manual metabolic pathway curation to decipher key metabolic features of this intriguing bacterial genus. We infer that Oscillospira species are butyrate producers, and at least some of them have the ability to utilize glucuronate, a common animal-derived sugar that is both produced by the human host and consumed by that host in diets rich in animal products. These findings could help explain diet-related inter-individual variation in faecal Oscillospira levels as well as the observation that the presence of this genus is reduced in diseases that involve inflammation. Oscillospira is an under-studied anaerobic bacterial genus from Clostridial cluster IV that has resisted cultivation for over a century since the first time it was observed. In recent years its 16S rRNA gene was identified in several human gut microbiota studies where it was often associated with interesting traits, especially leanness. However, very little is known about its metabolism or physiology. Here we used nearly complete genomes derived from shot-gun metagenomic data from the human gut to analyze Oscillospira and related bacteria. We used sequence similarity, gene neighbourhood information and manual metabolic pathway curation to decipher key metabolic features of this intriguing bacterial genus. We infer that Oscillospira species are butyrate producers, and at least some of them have the ability to utilize glucuronate, a common animal-derived sugar that is both produced by the human host and consumed by that host in diets rich in animal products. These findings could help explain diet-related inter-individual variation in faecal Oscillospira levels as well as the observation that the presence of this genus is reduced in diseases that involve inflammation. Summary Oscillospira is an under‐studied anaerobic bacterial genus from Clostridial cluster IV that has resisted cultivation for over a century since the first time it was observed. In recent years its 16S rRNA gene was identified in several human gut microbiota studies where it was often associated with interesting traits, especially leanness. However, very little is known about its metabolism or physiology. Here we used nearly complete genomes derived from shot‐gun metagenomic data from the human gut to analyze Oscillospira and related bacteria. We used sequence similarity, gene neighbourhood information and manual metabolic pathway curation to decipher key metabolic features of this intriguing bacterial genus. We infer that Oscillospira species are butyrate producers, and at least some of them have the ability to utilize glucuronate, a common animal‐derived sugar that is both produced by the human host and consumed by that host in diets rich in animal products. These findings could help explain diet‐related inter‐individual variation in faecal Oscillospira levels as well as the observation that the presence of this genus is reduced in diseases that involve inflammation. Summary Oscillospira is an under‐studied anaerobic bacterial genus from Clostridial cluster IV that has resisted cultivation for over a century since the first time it was observed. In recent years its 16S rRNA gene was identified in several human gut microbiota studies where it was often associated with interesting traits, especially leanness. However, very little is known about its metabolism or physiology. Here we used nearly complete genomes derived from shot‐gun metagenomic data from the human gut to analyze Oscillospira and related bacteria. We used sequence similarity, gene neighbourhood information and manual metabolic pathway curation to decipher key metabolic features of this intriguing bacterial genus. We infer that Oscillospira species are butyrate producers, and at least some of them have the ability to utilize glucuronate, a common animal‐derived sugar that is both produced by the human host and consumed by that host in diets rich in animal products. These findings could help explain diet‐related inter‐individual variation in faecal Oscillospira levels as well as the observation that the presence of this genus is reduced in diseases that involve inflammation. |
Author | Gophna, Uri Konikoff, Tom Nielsen, Henrik Bjørn |
Author_xml | – sequence: 1 givenname: Uri surname: Gophna fullname: Gophna, Uri email: urigo@tauex.tau.ac.il organization: Tel‐Aviv University – sequence: 2 givenname: Tom surname: Konikoff fullname: Konikoff, Tom organization: Tel‐Aviv University – sequence: 3 givenname: Henrik Bjørn surname: Nielsen fullname: Nielsen, Henrik Bjørn organization: Copenhagen |
BackLink | https://www.ncbi.nlm.nih.gov/pubmed/28028921$$D View this record in MEDLINE/PubMed |
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Oscillospira is an under‐studied anaerobic bacterial genus from Clostridial cluster IV that has resisted cultivation for over a century since the first... Oscillospira is an under-studied anaerobic bacterial genus from Clostridial cluster IV that has resisted cultivation for over a century since the first time it... Summary Oscillospira is an under‐studied anaerobic bacterial genus from Clostridial cluster IV that has resisted cultivation for over a century since the first... Summary Oscillospira is an under-studied anaerobic bacterial genus from Clostridial cluster IV that has resisted cultivation for over a century since the first... |
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SubjectTerms | Animals Butyrates - metabolism Clostridiales - classification Clostridiales - genetics Clostridium - genetics Feces - microbiology Gastrointestinal Microbiome Genome, Bacterial Humans Metabolic Networks and Pathways Metabolism Metagenomics RNA, Ribosomal, 16S |
Title | Oscillospira and related bacteria – From metagenomic species to metabolic features |
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