The complete chloroplast genome sequence of Styrax odoratissimus (Styracaceae)

Styrax odoratissimus Champ. ex Benth., also known as the extraordinary aromatic plant of Styracaceae, has been seriously threatened due to human activities. In this study, the complete chloroplast (cp) genome sequence of S. odoratissimus was determined by applying next-generation sequencing. The ent...

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Published inMitochondrial DNA. Part B. Resources Vol. 4; no. 2; pp. 4051 - 4052
Main Authors Zhang, Yaoqin, Tong, Lili, Xu, Xiaogang, Zhao, Zixun, Wang, Yabo
Format Journal Article
LanguageEnglish
Published England Taylor & Francis 03.07.2019
Taylor & Francis Ltd
Taylor & Francis Group
Subjects
Chloroplasts
complete chloroplast genome
Genomes
Inverted repeat
Mitogenome Announcement
Next-generation sequencing
Nucleotide sequence
phylogenetic analysis
Phylogeny
rRNA
Styracaceae
Styrax
Styrax odoratissimus
tRNA
phylogenetic analysis
complete chloroplast genome
Styracaceae
Styrax odoratissimus
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Abstract Styrax odoratissimus Champ. ex Benth., also known as the extraordinary aromatic plant of Styracaceae, has been seriously threatened due to human activities. In this study, the complete chloroplast (cp) genome sequence of S. odoratissimus was determined by applying next-generation sequencing. The entire cp genome was determined to be 157,921 bp in length. It contained large single-copy (LSC) and small single-copy (SSC) regions of 87,524 bp and 18,301 bp, respectively, which were separated by a pair of 26,048 bp inverted repeat (IR) regions. The genome contained 130 genes, including 85 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The overall GC content of S. odoratissimus genome is 36.96% and the corresponding values in LSC, SSC, and IR regions are 34.80, 30.27, and 42.92%, respectively. A phylogenetic tree reconstructed by 31 chloroplast genomes reveals that S. odoratissimus is most related to Styrax grandiflorus Griffith.
AbstractList Styrax odoratissimus Champ. ex Benth., also known as the extraordinary aromatic plant of Styracaceae, has been seriously threatened due to human activities. In this study, the complete chloroplast (cp) genome sequence of S. odoratissimus was determined by applying next-generation sequencing. The entire cp genome was determined to be 157,921 bp in length. It contained large single-copy (LSC) and small single-copy (SSC) regions of 87,524 bp and 18,301 bp, respectively, which were separated by a pair of 26,048 bp inverted repeat (IR) regions. The genome contained 130 genes, including 85 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The overall GC content of S. odoratissimus genome is 36.96% and the corresponding values in LSC, SSC, and IR regions are 34.80, 30.27, and 42.92%, respectively. A phylogenetic tree reconstructed by 31 chloroplast genomes reveals that S. odoratissimus is most related to Styrax grandiflorus Griffith.
Styrax odoratissimus Champ. ex Benth., also known as the extraordinary aromatic plant of Styracaceae, has been seriously threatened due to human activities. In this study, the complete chloroplast (cp) genome sequence of S. odoratissimus was determined by applying next-generation sequencing. The entire cp genome was determined to be 157,921 bp in length. It contained large single-copy (LSC) and small single-copy (SSC) regions of 87,524 bp and 18,301 bp, respectively, which were separated by a pair of 26,048 bp inverted repeat (IR) regions. The genome contained 130 genes, including 85 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The overall GC content of S. odoratissimus genome is 36.96% and the corresponding values in LSC, SSC, and IR regions are 34.80, 30.27, and 42.92%, respectively. A phylogenetic tree reconstructed by 31 chloroplast genomes reveals that S. odoratissimus is most related to Styrax grandiflorus Griffith.
Champ. ex Benth., also known as the extraordinary aromatic plant of Styracaceae, has been seriously threatened due to human activities. In this study, the complete chloroplast (cp) genome sequence of was determined by applying next-generation sequencing. The entire cp genome was determined to be 157,921 bp in length. It contained large single-copy (LSC) and small single-copy (SSC) regions of 87,524 bp and 18,301 bp, respectively, which were separated by a pair of 26,048 bp inverted repeat (IR) regions. The genome contained 130 genes, including 85 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The overall GC content of genome is 36.96% and the corresponding values in LSC, SSC, and IR regions are 34.80, 30.27, and 42.92%, respectively. A phylogenetic tree reconstructed by 31 chloroplast genomes reveals that is most related to Griffith.
Author Zhang, Yaoqin
Zhao, Zixun
Wang, Yabo
Tong, Lili
Xu, Xiaogang
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Cites_doi 10.1073/pnas.0709121104
10.1186/1471-2164-13-715
10.1007/978-1-62703-646-7_8
10.1089/cmb.2012.0021
10.1093/nar/gkt289
10.1073/pnas.0708072104
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Issue 2
Keywords phylogenetic analysis
complete chloroplast genome
Styracaceae
Styrax odoratissimus
Language English
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Snippet Styrax odoratissimus Champ. ex Benth., also known as the extraordinary aromatic plant of Styracaceae, has been seriously threatened due to human activities. In...
Champ. ex Benth., also known as the extraordinary aromatic plant of Styracaceae, has been seriously threatened due to human activities. In this study, the...
Styrax odoratissimus Champ. ex Benth., also known as the extraordinary aromatic plant of Styracaceae, has been seriously threatened due to human activities. In...
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SubjectTerms Chloroplasts
complete chloroplast genome
Genomes
Inverted repeat
Mitogenome Announcement
Next-generation sequencing
Nucleotide sequence
phylogenetic analysis
Phylogeny
rRNA
Styracaceae
Styrax
Styrax odoratissimus
tRNA
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Title The complete chloroplast genome sequence of Styrax odoratissimus (Styracaceae)
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