Identification of Quantitative Trait Loci Relating to Flowering Time, Flag Leaf and Awn Characteristics in a Novel Triticum dicoccum Mapping Population

Tetraploid landraces of wheat harbour genetic diversity that could be introgressed into modern bread wheat with the aid of marker-assisted selection to address the genetic diversity bottleneck in the breeding genepool. A novel bi-parental ssp. Schrank mapping population was created from a cross betw...

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Published inPlants (Basel) Vol. 9; no. 7; p. 829
Main Authors Wright, Tally I C, Burnett, Angela C, Griffiths, Howard, Kadner, Maxime, Powell, James S, Oliveira, Hugo R, Leigh, Fiona J
Format Journal Article
LanguageEnglish
Published Switzerland MDPI AG 02.07.2020
MDPI
Subjects
Agricultural production
Breeding
Chromosomes
Domestication
Drought resistance
Flowering
Gene mapping
Gene polymorphism
Genetic diversity
Genomes
Leaves
Mapping
Marker-assisted selection
Markers
Nucleotides
Photosynthesis
Physiology
Polymorphism
Population
QTL mapping
Quantitative trait loci
Single-nucleotide polymorphism
SNP genotyping
Stomata
tetraploid landraces
Tritcum dicoccum
Triticum dicoccoides
Triticum turgidum
Wheat
genetic diversity
Tritcum dicoccum
physiology
tetraploid landraces
wheat
SNP genotyping
QTL mapping
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Abstract Tetraploid landraces of wheat harbour genetic diversity that could be introgressed into modern bread wheat with the aid of marker-assisted selection to address the genetic diversity bottleneck in the breeding genepool. A novel bi-parental ssp. Schrank mapping population was created from a cross between two landrace accessions differing for multiple physiological traits. The population was phenotyped for traits hypothesised to be proxies for characteristics associated with improved photosynthesis or drought tolerance, including flowering time, awn length, flag leaf length and width, and stomatal and trichome density. The mapping individuals and parents were genotyped with the 35K Wheat Breeders' single nucleotide polymorphism (SNP) array. A genetic linkage map was constructed from 104 F4 individuals, consisting of 2066 SNPs with a total length of 3295 cM and an average spacing of 1.6 cM. Using the population, 10 quantitative trait loci (QTLs) for five traits were identified in two years of trials. Three consistent QTLs were identified over both trials for awn length, flowering time and flag leaf width, on chromosomes 4A, 7B and 5B, respectively. The awn length and flowering time QTLs correspond with the major loci and , respectively. The identified marker-trait associations could be developed for marker-assisted selection, to aid the introgression of diversity from a tetraploid source into modern wheat for potential physiological trait improvement.
AbstractList Tetraploid landraces of wheat harbour genetic diversity that could be introgressed into modern bread wheat with the aid of marker-assisted selection to address the genetic diversity bottleneck in the breeding genepool. A novel bi-parental Triticum turgidum ssp. dicoccum Schrank mapping population was created from a cross between two landrace accessions differing for multiple physiological traits. The population was phenotyped for traits hypothesised to be proxies for characteristics associated with improved photosynthesis or drought tolerance, including flowering time, awn length, flag leaf length and width, and stomatal and trichome density. The mapping individuals and parents were genotyped with the 35K Wheat Breeders’ single nucleotide polymorphism (SNP) array. A genetic linkage map was constructed from 104 F4 individuals, consisting of 2066 SNPs with a total length of 3295 cM and an average spacing of 1.6 cM. Using the population, 10 quantitative trait loci (QTLs) for five traits were identified in two years of trials. Three consistent QTLs were identified over both trials for awn length, flowering time and flag leaf width, on chromosomes 4A, 7B and 5B, respectively. The awn length and flowering time QTLs correspond with the major loci Hd and Vrn-B3, respectively. The identified marker-trait associations could be developed for marker-assisted selection, to aid the introgression of diversity from a tetraploid source into modern wheat for potential physiological trait improvement.
Tetraploid landraces of wheat harbour genetic diversity that could be introgressed into modern bread wheat with the aid of marker-assisted selection to address the genetic diversity bottleneck in the breeding genepool. A novel bi-parental Triticum turgidum ssp. dicoccum Schrank mapping population was created from a cross between two landrace accessions differing for multiple physiological traits. The population was phenotyped for traits hypothesised to be proxies for characteristics associated with improved photosynthesis or drought tolerance, including flowering time, awn length, flag leaf length and width, and stomatal and trichome density. The mapping individuals and parents were genotyped with the 35K Wheat Breeders’ single nucleotide polymorphism (SNP) array. A genetic linkage map was constructed from 104 F4 individuals, consisting of 2066 SNPs with a total length of 3295 cM and an average spacing of 1.6 cM. Using the population, 10 quantitative trait loci (QTLs) for five traits were identified in two years of trials. Three consistent QTLs were identified over both trials for awn length, flowering time and flag leaf width, on chromosomes 4A, 7B and 5B, respectively. The awn length and flowering time QTLs correspond with the major loci Hd and Vrn-B3 , respectively. The identified marker-trait associations could be developed for marker-assisted selection, to aid the introgression of diversity from a tetraploid source into modern wheat for potential physiological trait improvement.
Tetraploid landraces of wheat harbour genetic diversity that could be introgressed into modern bread wheat with the aid of marker-assisted selection to address the genetic diversity bottleneck in the breeding genepool. A novel bi-parental ssp. Schrank mapping population was created from a cross between two landrace accessions differing for multiple physiological traits. The population was phenotyped for traits hypothesised to be proxies for characteristics associated with improved photosynthesis or drought tolerance, including flowering time, awn length, flag leaf length and width, and stomatal and trichome density. The mapping individuals and parents were genotyped with the 35K Wheat Breeders' single nucleotide polymorphism (SNP) array. A genetic linkage map was constructed from 104 F4 individuals, consisting of 2066 SNPs with a total length of 3295 cM and an average spacing of 1.6 cM. Using the population, 10 quantitative trait loci (QTLs) for five traits were identified in two years of trials. Three consistent QTLs were identified over both trials for awn length, flowering time and flag leaf width, on chromosomes 4A, 7B and 5B, respectively. The awn length and flowering time QTLs correspond with the major loci and , respectively. The identified marker-trait associations could be developed for marker-assisted selection, to aid the introgression of diversity from a tetraploid source into modern wheat for potential physiological trait improvement.
Author Wright, Tally I C
Kadner, Maxime
Burnett, Angela C
Oliveira, Hugo R
Powell, James S
Griffiths, Howard
Leigh, Fiona J
AuthorAffiliation 2 Brookhaven National Laboratory, Upton, NY 11973, USA
3 Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge CB2 3EA, UK; hg230@cam.ac.uk
1 The John Bingham Laboratory, NIAB, 93 Lawrence Weaver Road, Cambridge CB3 0LE, UK; aburnett@bnl.gov (A.C.B.); maxime.kadner@outlook.fr (M.K.); jsp532@york.ac.uk (J.S.P.); fiona.leigh@niab.com (F.J.L.)
4 Interdisciplinary Centre for Archaeology and Evolution of Human Behaviour, University of Algarve, 8005-139 Faro, Portugal; hroliveira@ualg.pt
AuthorAffiliation_xml – name: 1 The John Bingham Laboratory, NIAB, 93 Lawrence Weaver Road, Cambridge CB3 0LE, UK; aburnett@bnl.gov (A.C.B.); maxime.kadner@outlook.fr (M.K.); jsp532@york.ac.uk (J.S.P.); fiona.leigh@niab.com (F.J.L.)
– name: 2 Brookhaven National Laboratory, Upton, NY 11973, USA
– name: 4 Interdisciplinary Centre for Archaeology and Evolution of Human Behaviour, University of Algarve, 8005-139 Faro, Portugal; hroliveira@ualg.pt
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BackLink https://www.ncbi.nlm.nih.gov/pubmed/32630645$$D View this record in MEDLINE/PubMed
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Issue 7
Keywords genetic diversity
Tritcum dicoccum
physiology
tetraploid landraces
wheat
SNP genotyping
QTL mapping
Language English
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SSID ssj0000800816
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Snippet Tetraploid landraces of wheat harbour genetic diversity that could be introgressed into modern bread wheat with the aid of marker-assisted selection to address...
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pubmedcentral
proquest
crossref
pubmed
SourceType Open Website
Open Access Repository
Aggregation Database
Index Database
StartPage 829
SubjectTerms Agricultural production
Breeding
Chromosomes
Domestication
Drought resistance
Flowering
Gene mapping
Gene polymorphism
Genetic diversity
Genomes
Leaves
Mapping
Marker-assisted selection
Markers
Nucleotides
Photosynthesis
Physiology
Polymorphism
Population
QTL mapping
Quantitative trait loci
Single-nucleotide polymorphism
SNP genotyping
Stomata
tetraploid landraces
Tritcum dicoccum
Triticum dicoccoides
Triticum turgidum
Wheat
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Title Identification of Quantitative Trait Loci Relating to Flowering Time, Flag Leaf and Awn Characteristics in a Novel Triticum dicoccum Mapping Population
URI https://www.ncbi.nlm.nih.gov/pubmed/32630645
https://www.proquest.com/docview/2420899232
https://search.proquest.com/docview/2421117589
https://pubmed.ncbi.nlm.nih.gov/PMC7412379
https://doaj.org/article/1cd1936035e9491193f56a9502f925fd
Volume 9
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