Identification of Quantitative Trait Loci Relating to Flowering Time, Flag Leaf and Awn Characteristics in a Novel Triticum dicoccum Mapping Population
Tetraploid landraces of wheat harbour genetic diversity that could be introgressed into modern bread wheat with the aid of marker-assisted selection to address the genetic diversity bottleneck in the breeding genepool. A novel bi-parental ssp. Schrank mapping population was created from a cross betw...
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Published in | Plants (Basel) Vol. 9; no. 7; p. 829 |
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Main Authors | , , , , , , |
Format | Journal Article |
Language | English |
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Abstract | Tetraploid landraces of wheat harbour genetic diversity that could be introgressed into modern bread wheat with the aid of marker-assisted selection to address the genetic diversity bottleneck in the breeding genepool. A novel bi-parental
ssp.
Schrank mapping population was created from a cross between two landrace accessions differing for multiple physiological traits. The population was phenotyped for traits hypothesised to be proxies for characteristics associated with improved photosynthesis or drought tolerance, including flowering time, awn length, flag leaf length and width, and stomatal and trichome density. The mapping individuals and parents were genotyped with the 35K Wheat Breeders' single nucleotide polymorphism (SNP) array. A genetic linkage map was constructed from 104 F4 individuals, consisting of 2066 SNPs with a total length of 3295 cM and an average spacing of 1.6 cM. Using the population, 10 quantitative trait loci (QTLs) for five traits were identified in two years of trials. Three consistent QTLs were identified over both trials for awn length, flowering time and flag leaf width, on chromosomes 4A, 7B and 5B, respectively. The awn length and flowering time QTLs correspond with the major loci
and
, respectively. The identified marker-trait associations could be developed for marker-assisted selection, to aid the introgression of diversity from a tetraploid source into modern wheat for potential physiological trait improvement. |
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AbstractList | Tetraploid landraces of wheat harbour genetic diversity that could be introgressed into modern bread wheat with the aid of marker-assisted selection to address the genetic diversity bottleneck in the breeding genepool. A novel bi-parental Triticum turgidum ssp. dicoccum Schrank mapping population was created from a cross between two landrace accessions differing for multiple physiological traits. The population was phenotyped for traits hypothesised to be proxies for characteristics associated with improved photosynthesis or drought tolerance, including flowering time, awn length, flag leaf length and width, and stomatal and trichome density. The mapping individuals and parents were genotyped with the 35K Wheat Breeders’ single nucleotide polymorphism (SNP) array. A genetic linkage map was constructed from 104 F4 individuals, consisting of 2066 SNPs with a total length of 3295 cM and an average spacing of 1.6 cM. Using the population, 10 quantitative trait loci (QTLs) for five traits were identified in two years of trials. Three consistent QTLs were identified over both trials for awn length, flowering time and flag leaf width, on chromosomes 4A, 7B and 5B, respectively. The awn length and flowering time QTLs correspond with the major loci Hd and Vrn-B3, respectively. The identified marker-trait associations could be developed for marker-assisted selection, to aid the introgression of diversity from a tetraploid source into modern wheat for potential physiological trait improvement. Tetraploid landraces of wheat harbour genetic diversity that could be introgressed into modern bread wheat with the aid of marker-assisted selection to address the genetic diversity bottleneck in the breeding genepool. A novel bi-parental Triticum turgidum ssp. dicoccum Schrank mapping population was created from a cross between two landrace accessions differing for multiple physiological traits. The population was phenotyped for traits hypothesised to be proxies for characteristics associated with improved photosynthesis or drought tolerance, including flowering time, awn length, flag leaf length and width, and stomatal and trichome density. The mapping individuals and parents were genotyped with the 35K Wheat Breeders’ single nucleotide polymorphism (SNP) array. A genetic linkage map was constructed from 104 F4 individuals, consisting of 2066 SNPs with a total length of 3295 cM and an average spacing of 1.6 cM. Using the population, 10 quantitative trait loci (QTLs) for five traits were identified in two years of trials. Three consistent QTLs were identified over both trials for awn length, flowering time and flag leaf width, on chromosomes 4A, 7B and 5B, respectively. The awn length and flowering time QTLs correspond with the major loci Hd and Vrn-B3 , respectively. The identified marker-trait associations could be developed for marker-assisted selection, to aid the introgression of diversity from a tetraploid source into modern wheat for potential physiological trait improvement. Tetraploid landraces of wheat harbour genetic diversity that could be introgressed into modern bread wheat with the aid of marker-assisted selection to address the genetic diversity bottleneck in the breeding genepool. A novel bi-parental ssp. Schrank mapping population was created from a cross between two landrace accessions differing for multiple physiological traits. The population was phenotyped for traits hypothesised to be proxies for characteristics associated with improved photosynthesis or drought tolerance, including flowering time, awn length, flag leaf length and width, and stomatal and trichome density. The mapping individuals and parents were genotyped with the 35K Wheat Breeders' single nucleotide polymorphism (SNP) array. A genetic linkage map was constructed from 104 F4 individuals, consisting of 2066 SNPs with a total length of 3295 cM and an average spacing of 1.6 cM. Using the population, 10 quantitative trait loci (QTLs) for five traits were identified in two years of trials. Three consistent QTLs were identified over both trials for awn length, flowering time and flag leaf width, on chromosomes 4A, 7B and 5B, respectively. The awn length and flowering time QTLs correspond with the major loci and , respectively. The identified marker-trait associations could be developed for marker-assisted selection, to aid the introgression of diversity from a tetraploid source into modern wheat for potential physiological trait improvement. |
Author | Wright, Tally I C Kadner, Maxime Burnett, Angela C Oliveira, Hugo R Powell, James S Griffiths, Howard Leigh, Fiona J |
AuthorAffiliation | 2 Brookhaven National Laboratory, Upton, NY 11973, USA 3 Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge CB2 3EA, UK; hg230@cam.ac.uk 1 The John Bingham Laboratory, NIAB, 93 Lawrence Weaver Road, Cambridge CB3 0LE, UK; aburnett@bnl.gov (A.C.B.); maxime.kadner@outlook.fr (M.K.); jsp532@york.ac.uk (J.S.P.); fiona.leigh@niab.com (F.J.L.) 4 Interdisciplinary Centre for Archaeology and Evolution of Human Behaviour, University of Algarve, 8005-139 Faro, Portugal; hroliveira@ualg.pt |
AuthorAffiliation_xml | – name: 1 The John Bingham Laboratory, NIAB, 93 Lawrence Weaver Road, Cambridge CB3 0LE, UK; aburnett@bnl.gov (A.C.B.); maxime.kadner@outlook.fr (M.K.); jsp532@york.ac.uk (J.S.P.); fiona.leigh@niab.com (F.J.L.) – name: 2 Brookhaven National Laboratory, Upton, NY 11973, USA – name: 4 Interdisciplinary Centre for Archaeology and Evolution of Human Behaviour, University of Algarve, 8005-139 Faro, Portugal; hroliveira@ualg.pt – name: 3 Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge CB2 3EA, UK; hg230@cam.ac.uk |
Author_xml | – sequence: 1 givenname: Tally I C surname: Wright fullname: Wright, Tally I C organization: The John Bingham Laboratory, NIAB, 93 Lawrence Weaver Road, Cambridge CB3 0LE, UK – sequence: 2 givenname: Angela C orcidid: 0000-0002-2678-9842 surname: Burnett fullname: Burnett, Angela C organization: Brookhaven National Laboratory, Upton, NY 11973, USA – sequence: 3 givenname: Howard surname: Griffiths fullname: Griffiths, Howard organization: Department of Plant Sciences, University of Cambridge, Downing Street, Cambridge CB2 3EA, UK – sequence: 4 givenname: Maxime surname: Kadner fullname: Kadner, Maxime organization: The John Bingham Laboratory, NIAB, 93 Lawrence Weaver Road, Cambridge CB3 0LE, UK – sequence: 5 givenname: James S surname: Powell fullname: Powell, James S organization: The John Bingham Laboratory, NIAB, 93 Lawrence Weaver Road, Cambridge CB3 0LE, UK – sequence: 6 givenname: Hugo R surname: Oliveira fullname: Oliveira, Hugo R organization: Interdisciplinary Centre for Archaeology and Evolution of Human Behaviour, University of Algarve, 8005-139 Faro, Portugal – sequence: 7 givenname: Fiona J surname: Leigh fullname: Leigh, Fiona J organization: The John Bingham Laboratory, NIAB, 93 Lawrence Weaver Road, Cambridge CB3 0LE, UK |
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Keywords | genetic diversity Tritcum dicoccum physiology tetraploid landraces wheat SNP genotyping QTL mapping |
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SubjectTerms | Agricultural production Breeding Chromosomes Domestication Drought resistance Flowering Gene mapping Gene polymorphism Genetic diversity Genomes Leaves Mapping Marker-assisted selection Markers Nucleotides Photosynthesis Physiology Polymorphism Population QTL mapping Quantitative trait loci Single-nucleotide polymorphism SNP genotyping Stomata tetraploid landraces Tritcum dicoccum Triticum dicoccoides Triticum turgidum Wheat |
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Title | Identification of Quantitative Trait Loci Relating to Flowering Time, Flag Leaf and Awn Characteristics in a Novel Triticum dicoccum Mapping Population |
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