Genomic organization, complex splicing pattern and expression of a human septin gene on chromosome 17q25.3

The Ov/Br septin gene, which is also a fusion partner of MLL in acute myeloid leukaemia, is a member of a family of novel GTP binding proteins that have been implicated in cytokinesis and exocytosis. In this study, we describe the genomic and transcriptional organization of this gene, detailing seve...

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Published inOncogene Vol. 20; no. 41; pp. 5930 - 5939
Main Authors MCILHATTON, Michael A, BURROWS, James F, DONAGHY, Paul G, CHANDULOY, Severine, JOHNSTON, Patrick G, RUSSELL, S. E
Format Journal Article
LanguageEnglish
Published Basingstoke Nature Publishing 13.09.2001
Nature Publishing Group
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Abstract The Ov/Br septin gene, which is also a fusion partner of MLL in acute myeloid leukaemia, is a member of a family of novel GTP binding proteins that have been implicated in cytokinesis and exocytosis. In this study, we describe the genomic and transcriptional organization of this gene, detailing seventeen exons distributed over 240 kb of sequence. Extensive database analyses identified orthologous rodent cDNAs that corresponded to new, unidentified 5' splice variants of the Ov/Br septin gene, increasing the total number of such variants to six. We report that splicing events, occurring at non-canonical sites within the body of the 3' terminal exon, remove either 1801 bp or 1849 bp of non-coding sequence and facilitate access to a secondary open reading frame of 44 amino acids maintained near the end of the 3' UTR. These events constitute a novel coding arrangement and represent the first report of such a design being implemented by a eukaryotic gene. The various Ov/Br proteins either differ minimally at their amino and carboxy termini or are equivalent to truncated versions of larger isoforms. Northern analysis with an Ov/Br septin 3' UTR probe reveals three transcripts of 4.4, 4 and 3 kb, the latter being restricted to a sub-set of the tissues tested. Investigation of the identified Ov/Br septin isoforms by RT-PCR confirms a complex transcriptional pattern, with several isoforms showing tissue-specific distribution. To date, none of the other human septins have demonstrated such transcriptional complexity.
AbstractList The Ov/Br septin gene, which is also a fusion partner of MLL in acute myeloid leukaemia, is a member of a family of novel GTP binding proteins that have been implicated in cytokinesis and exocytosis. In this study, we describe the genomic and transcriptional organization of this gene, detailing seventeen exons distributed over 240 kb of sequence. Extensive database analyses identified orthologous rodent cDNAs that corresponded to new, unidentified 5′ splice variants of the Ov/Br septin gene, increasing the total number of such variants to six. We report that splicing events, occurring at non-canonical sites within the body of the 3′ terminal exon, remove either 1801 bp or 1849 bp of non-coding sequence and facilitate access to a secondary open reading frame of 44 amino acids maintained near the end of the 3′ UTR. These events constitute a novel coding arrangement and represent the first report of such a design being implemented by a eukaryotic gene. The various Ov/Br proteins either differ minimally at their amino and carboxy termini or are equivalent to truncated versions of larger isoforms. Northern analysis with an Ov/Br septin 3′ UTR probe reveals three transcripts of 4.4, 4 and 3 kb, the latter being restricted to a sub-set of the tissues tested. Investigation of the identified Ov/Br septin isoforms by RT–PCR confirms a complex transcriptional pattern, with several isoforms showing tissue-specific distribution. To date, none of the other human septins have demonstrated such transcriptional complexity.
The Ov/Br septin gene, which is also a fusion partner of MLL in acute myeloid leukaemia, is a member of a family of novel GTP binding proteins that have been implicated in cytokinesis and exocytosis. In this study, we describe the genomic and transcriptional organization of this gene, detailing seventeen exons distributed over 240 kb of sequence. Extensive database analyses identified orthologous rodent cDNAs that corresponded to new, unidentified 5' splice variants of the Ov/Br septin gene, increasing the total number of such variants to six. We report that splicing events, occurring at non-canonical sites within the body of the 3' terminal exon, remove either 1801 bp or 1849 bp of non-coding sequence and facilitate access to a secondary open reading frame of 44 amino acids maintained near the end of the 3' UTR. These events constitute a novel coding arrangement and represent the first report of such a design being implemented by a enkaryotic gene. The various Ov/Br proteins either differ minimally at their amino and carboxy termini or are equivalent to truncated versions of larger isoforms. Northern analysis with an Ov/Br septin 3' UTR probe reveals three transcripts of 4.4, 4 and 3 kb, the latter being restricted to a sub-set of the tissues tested. Investigation of the identified Ov/Br septin isoforms by RT-PCR confirms a complex transcriptional pattern, with several isoforms showing tissue-specific distribution. To date, none of the other human septins have demonstrated such transcriptional complexity.
Audience Academic
Author BURROWS, James F
MCILHATTON, Michael A
DONAGHY, Paul G
JOHNSTON, Patrick G
CHANDULOY, Severine
RUSSELL, S. E
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Keywords Human
Organization
Splicing
Gene expression
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Chromosome A
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Snippet The Ov/Br septin gene, which is also a fusion partner of MLL in acute myeloid leukaemia, is a member of a family of novel GTP binding proteins that have been...
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StartPage 5930
SubjectTerms 3' Untranslated regions
Acute myeloid leukemia
Alternative Splicing
Amino Acid Sequence
Base Sequence
Biological and medical sciences
Cell division
Cell physiology
Cell transformation and carcinogenesis. Action of oncogenes and antioncogenes
Chromosome 17
Chromosome Mapping
Chromosomes
Chromosomes, Human, Pair 17 - genetics
Cytokinesis
Cytoskeletal Proteins - chemistry
Cytoskeletal Proteins - genetics
Exocytosis
Exons
Fundamental and applied biological sciences. Psychology
Gene Expression Regulation, Neoplastic
Genes
Genome, Human
Genomics
GTP-Binding Proteins - chemistry
GTP-Binding Proteins - genetics
Humans
Insects
Isoforms
Leukemia
Molecular and cellular biology
Molecular Sequence Data
Neoplasm Proteins - genetics
Oncology
Ov/Br septin gene
Protein Isoforms - chemistry
Protein Isoforms - genetics
Proteins
RNA, Messenger - metabolism
Septin
Transcription
Title Genomic organization, complex splicing pattern and expression of a human septin gene on chromosome 17q25.3
URI https://www.ncbi.nlm.nih.gov/pubmed/11593400
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Volume 20
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