Global profiling of co- and post-translationally N-myristoylated proteomes in human cells

Protein N -myristoylation is a ubiquitous co- and post-translational modification that has been implicated in the development and progression of a range of human diseases. Here, we report the global N -myristoylated proteome in human cells determined using quantitative chemical proteomics combined w...

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Published inNature communications Vol. 5; no. 1; p. 4919
Main Authors Thinon, Emmanuelle, Serwa, Remigiusz A., Broncel, Malgorzata, Brannigan, James A., Brassat, Ute, Wright, Megan H., Heal, William P., Wilkinson, Anthony J., Mann, David J., Tate, Edward W.
Format Journal Article
LanguageEnglish
Published London Nature Publishing Group UK 26.09.2014
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Abstract Protein N -myristoylation is a ubiquitous co- and post-translational modification that has been implicated in the development and progression of a range of human diseases. Here, we report the global N -myristoylated proteome in human cells determined using quantitative chemical proteomics combined with potent and specific human N -myristoyltransferase (NMT) inhibition. Global quantification of N -myristoylation during normal growth or apoptosis allowed the identification of >100 N -myristoylated proteins, >95% of which are identified for the first time at endogenous levels. Furthermore, quantitative dose response for inhibition of N -myristoylation is determined for >70 substrates simultaneously across the proteome. Small-molecule inhibition through a conserved substrate-binding pocket is also demonstrated by solving the crystal structures of inhibitor-bound NMT1 and NMT2. The presented data substantially expand the known repertoire of co- and post-translational N -myristoylation in addition to validating tools for the pharmacological inhibition of NMT in living cells. Protein N -myristoylation is a ubiquitous modification implicated in the regulation of multiple cellular processes. Here, Thinon et al. report the development of a general method to identify N -myristoylated proteins in human cells and identify over 100 endogenous post- and co-translational substrates of N -myristoyltransferase.
AbstractList Protein N -myristoylation is a ubiquitous co- and post-translational modification that has been implicated in the development and progression of a range of human diseases. Here, we report the global N -myristoylated proteome in human cells determined using quantitative chemical proteomics combined with potent and specific human N -myristoyltransferase (NMT) inhibition. Global quantification of N -myristoylation during normal growth or apoptosis allowed the identification of >100 N -myristoylated proteins, >95% of which are identified for the first time at endogenous levels. Furthermore, quantitative dose response for inhibition of N -myristoylation is determined for >70 substrates simultaneously across the proteome. Small-molecule inhibition through a conserved substrate-binding pocket is also demonstrated by solving the crystal structures of inhibitor-bound NMT1 and NMT2. The presented data substantially expand the known repertoire of co- and post-translational N -myristoylation in addition to validating tools for the pharmacological inhibition of NMT in living cells. Protein N -myristoylation is a ubiquitous modification implicated in the regulation of multiple cellular processes. Here, Thinon et al. report the development of a general method to identify N -myristoylated proteins in human cells and identify over 100 endogenous post- and co-translational substrates of N -myristoyltransferase.
Protein N-myristoylation is a ubiquitous co- and post-translational modification that has been implicated in the development and progression of a range of human diseases. Here, we report the global N-myristoylated proteome in human cells determined using quantitative chemical proteomics combined with potent and specific human N-myristoyltransferase (NMT) inhibition. Global quantification of N-myristoylation during normal growth or apoptosis allowed the identification of >100 N-myristoylated proteins, >95% of which are identified for the first time at endogenous levels. Furthermore, quantitative dose response for inhibition of N-myristoylation is determined for >70 substrates simultaneously across the proteome. Small-molecule inhibition through a conserved substrate-binding pocket is also demonstrated by solving the crystal structures of inhibitor-bound NMT1 and NMT2. The presented data substantially expand the known repertoire of co- and post-translational N-myristoylation in addition to validating tools for the pharmacological inhibition of NMT in living cells.
Abstract Protein N -myristoylation is a ubiquitous co- and post-translational modification that has been implicated in the development and progression of a range of human diseases. Here, we report the global N -myristoylated proteome in human cells determined using quantitative chemical proteomics combined with potent and specific human N -myristoyltransferase (NMT) inhibition. Global quantification of N -myristoylation during normal growth or apoptosis allowed the identification of >100 N -myristoylated proteins, >95% of which are identified for the first time at endogenous levels. Furthermore, quantitative dose response for inhibition of N -myristoylation is determined for >70 substrates simultaneously across the proteome. Small-molecule inhibition through a conserved substrate-binding pocket is also demonstrated by solving the crystal structures of inhibitor-bound NMT1 and NMT2. The presented data substantially expand the known repertoire of co- and post-translational N -myristoylation in addition to validating tools for the pharmacological inhibition of NMT in living cells.
ArticleNumber 4919
Author Broncel, Malgorzata
Serwa, Remigiusz A.
Heal, William P.
Brannigan, James A.
Mann, David J.
Brassat, Ute
Tate, Edward W.
Thinon, Emmanuelle
Wright, Megan H.
Wilkinson, Anthony J.
Author_xml – sequence: 1
  givenname: Emmanuelle
  surname: Thinon
  fullname: Thinon, Emmanuelle
  organization: Department of Chemistry, Imperial College London, Department of Life Sciences, Imperial College London, Present address: The Rockefeller University, 1230 York Avenue, New York, New York, USA
– sequence: 2
  givenname: Remigiusz A.
  surname: Serwa
  fullname: Serwa, Remigiusz A.
  organization: Department of Chemistry, Imperial College London
– sequence: 3
  givenname: Malgorzata
  surname: Broncel
  fullname: Broncel, Malgorzata
  organization: Department of Chemistry, Imperial College London
– sequence: 4
  givenname: James A.
  surname: Brannigan
  fullname: Brannigan, James A.
  organization: Department of Chemistry, York Structural Biology Laboratory, University of York
– sequence: 5
  givenname: Ute
  surname: Brassat
  fullname: Brassat, Ute
  organization: Department of Chemistry, Imperial College London, Department of Life Sciences, Imperial College London, Present address: EUFETS GmbH, Vollmersbachstrasse 66, 55743 Idar-Oberstein, Germany
– sequence: 6
  givenname: Megan H.
  surname: Wright
  fullname: Wright, Megan H.
  organization: Department of Chemistry, Imperial College London, Department of Chemistry, Institute of Chemical Biology, Imperial College London, Present address: Department of Chemistry, TU München, Lichtenbergstrasse 4, D-85748 Garching, Germany
– sequence: 7
  givenname: William P.
  surname: Heal
  fullname: Heal, William P.
  organization: Department of Chemistry, Imperial College London, Present address: Department of Chemistry, Kings College London, London SE1 1UL, UK
– sequence: 8
  givenname: Anthony J.
  surname: Wilkinson
  fullname: Wilkinson, Anthony J.
  organization: Department of Chemistry, York Structural Biology Laboratory, University of York
– sequence: 9
  givenname: David J.
  surname: Mann
  fullname: Mann, David J.
  organization: Department of Life Sciences, Imperial College London, Department of Chemistry, Institute of Chemical Biology, Imperial College London
– sequence: 10
  givenname: Edward W.
  surname: Tate
  fullname: Tate, Edward W.
  email: e.tate@imperial.ac.uk
  organization: Department of Chemistry, Imperial College London, Department of Chemistry, Institute of Chemical Biology, Imperial College London
BackLink https://www.ncbi.nlm.nih.gov/pubmed/25255805$$D View this record in MEDLINE/PubMed
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ContentType Journal Article
Copyright The Author(s) 2014
Copyright Nature Publishing Group Sep 2014
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Issue 1
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content type line 23
These authors contributed equally to this work
Present address: Department of Chemistry, Kings College London, London SE1 1UL, UK
Present address: EUFETS GmbH, Vollmersbachstrasse 66, 55743 Idar-Oberstein, Germany
Present address: Department of Chemistry, TU München, Lichtenbergstrasse 4, D-85748 Garching, Germany
Present address: The Rockefeller University, 1230 York Avenue, New York, New York, USA
OpenAccessLink https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4200515/
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Snippet Protein N -myristoylation is a ubiquitous co- and post-translational modification that has been implicated in the development and progression of a range of...
Protein N-myristoylation is a ubiquitous co- and post-translational modification that has been implicated in the development and progression of a range of...
Abstract Protein N -myristoylation is a ubiquitous co- and post-translational modification that has been implicated in the development and progression of a...
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StartPage 4919
SubjectTerms 631/92/458
631/92/475
82/58
82/80
96/2
Acyltransferases - genetics
Acyltransferases - metabolism
Crystallography, X-Ray
HeLa Cells
Humanities and Social Sciences
Humans
multidisciplinary
Myristic Acid - metabolism
Protein Processing, Post-Translational
Proteome - genetics
Proteome - metabolism
Science
Science (multidisciplinary)
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Title Global profiling of co- and post-translationally N-myristoylated proteomes in human cells
URI https://link.springer.com/article/10.1038/ncomms5919
https://www.ncbi.nlm.nih.gov/pubmed/25255805
https://www.proquest.com/docview/1565496271
https://search.proquest.com/docview/1566407550
https://pubmed.ncbi.nlm.nih.gov/PMC4200515
Volume 5
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