More diversified antibiotic resistance genes in chickens and workers of the live poultry markets
•More diversified ARGs were identified the LPMs than the farms.•The live poultry trade may speed up the spread of antibiotic resistance.•LPM workers are exposed to antimicrobial resistant bacteria in LPMs.•More abundant ARGs were observed in the LPM workers than control subjects.•The prevalence of m...
Saved in:
| Published in | Environment international Vol. 153; p. 106534 |
|---|---|
| Main Authors | , , , , , , , , , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
Netherlands
Elsevier Ltd
01.08.2021
Elsevier |
| Subjects | |
| Online Access | Get full text |
| ISSN | 0160-4120 1873-6750 1873-6750 |
| DOI | 10.1016/j.envint.2021.106534 |
Cover
Loading…
| Abstract | •More diversified ARGs were identified the LPMs than the farms.•The live poultry trade may speed up the spread of antibiotic resistance.•LPM workers are exposed to antimicrobial resistant bacteria in LPMs.•More abundant ARGs were observed in the LPM workers than control subjects.•The prevalence of mcr-1 decreased significantly in LPMs after the ban on colistin as a growth promoter.
Poultry farms and LPMs are a reservoir of antimicrobial resistant bacteria and resistance genes from feces. The LPM is an important interface between humans, farm animals, and environments in a typical urban environment, and it is considered a reservoir for ARGs and viruses. However, the antibiotic resistomes shared between chicken farms and LPMs, and that of LPM workers and people who have no contact with the LPMs remains unknown.
We characterized the resistome and bacterial microbiome of farm chickens and LPMs and LPM workers and control subjects. The mobile ARGs identified in chickens and the distribution of the mcr-family genes in publicly bacterial genomes and chicken gut metagenomes was analyzed, respectively. In addition, the prevalence of mcr-1 in LPMs following the ban on colistin-positive additives in China was explored.
By profiling the microbiomes and resistomes in chicken farms, LPMs, LPM workers, and LPM environments, we found that the bacterial community composition and resistomes were significantly different between the farms and the LPMs, and the LPM samples possessed more diversified ARGs (59 types) than the farms. Some mobile ARGs, such as mcr-1 and tet(X3), identified in chicken farms, LPMs, LPM workers, and LPM environments were also harbored by human clinical pathogens. Moreover, we found that the resistomes were significantly different between the LPM workers and those who have no contact with the LPMs, and more diversified ARGs (188 types) were observed in the LPM workers. It is also worth noting that mcr-10 was identified in both human (5.2%, 96/1,859) and chicken (1.5%, 14/910) gut microbiomes. Although mcr-1 prevalence decreased significantly in the LPMs across the eight provinces in China, from 190/333 (57.1%) samples in September 2016-March 2017 to 208/544 (38.2%) samples in August 2018-May 2019, it is widespread and continuous in the LPMs.
Live poultry trade has a significant effect on the diversity of ARGs in LPM workers, chickens, and environments in China, driven by human selection with the live poultry trade. Our findings highlight the live poultry trade as ARG disseminators into LPMs, which serve as an interface of LPM environments even LPM workers, and that could urge Government to have better control of LPMs in China. Further studies on the factors that promote antibiotic resistance exchange between LPM environments, human commensals, and pathogens, are warranted. |
|---|---|
| AbstractList | Poultry farms and LPMs are a reservoir of antimicrobial resistant bacteria and resistance genes from feces. The LPM is an important interface between humans, farm animals, and environments in a typical urban environment, and it is considered a reservoir for ARGs and viruses. However, the antibiotic resistomes shared between chicken farms and LPMs, and that of LPM workers and people who have no contact with the LPMs remains unknown.BACKGROUNDPoultry farms and LPMs are a reservoir of antimicrobial resistant bacteria and resistance genes from feces. The LPM is an important interface between humans, farm animals, and environments in a typical urban environment, and it is considered a reservoir for ARGs and viruses. However, the antibiotic resistomes shared between chicken farms and LPMs, and that of LPM workers and people who have no contact with the LPMs remains unknown.We characterized the resistome and bacterial microbiome of farm chickens and LPMs and LPM workers and control subjects. The mobile ARGs identified in chickens and the distribution of the mcr-family genes in publicly bacterial genomes and chicken gut metagenomes was analyzed, respectively. In addition, the prevalence of mcr-1 in LPMs following the ban on colistin-positive additives in China was explored.METHODSWe characterized the resistome and bacterial microbiome of farm chickens and LPMs and LPM workers and control subjects. The mobile ARGs identified in chickens and the distribution of the mcr-family genes in publicly bacterial genomes and chicken gut metagenomes was analyzed, respectively. In addition, the prevalence of mcr-1 in LPMs following the ban on colistin-positive additives in China was explored.By profiling the microbiomes and resistomes in chicken farms, LPMs, LPM workers, and LPM environments, we found that the bacterial community composition and resistomes were significantly different between the farms and the LPMs, and the LPM samples possessed more diversified ARGs (59 types) than the farms. Some mobile ARGs, such as mcr-1 and tet(X3), identified in chicken farms, LPMs, LPM workers, and LPM environments were also harbored by human clinical pathogens. Moreover, we found that the resistomes were significantly different between the LPM workers and those who have no contact with the LPMs, and more diversified ARGs (188 types) were observed in the LPM workers. It is also worth noting that mcr-10 was identified in both human (5.2%, 96/1,859) and chicken (1.5%, 14/910) gut microbiomes. Although mcr-1 prevalence decreased significantly in the LPMs across the eight provinces in China, from 190/333 (57.1%) samples in September 2016-March 2017 to 208/544 (38.2%) samples in August 2018-May 2019, it is widespread and continuous in the LPMs.RESULTSBy profiling the microbiomes and resistomes in chicken farms, LPMs, LPM workers, and LPM environments, we found that the bacterial community composition and resistomes were significantly different between the farms and the LPMs, and the LPM samples possessed more diversified ARGs (59 types) than the farms. Some mobile ARGs, such as mcr-1 and tet(X3), identified in chicken farms, LPMs, LPM workers, and LPM environments were also harbored by human clinical pathogens. Moreover, we found that the resistomes were significantly different between the LPM workers and those who have no contact with the LPMs, and more diversified ARGs (188 types) were observed in the LPM workers. It is also worth noting that mcr-10 was identified in both human (5.2%, 96/1,859) and chicken (1.5%, 14/910) gut microbiomes. Although mcr-1 prevalence decreased significantly in the LPMs across the eight provinces in China, from 190/333 (57.1%) samples in September 2016-March 2017 to 208/544 (38.2%) samples in August 2018-May 2019, it is widespread and continuous in the LPMs.Live poultry trade has a significant effect on the diversity of ARGs in LPM workers, chickens, and environments in China, driven by human selection with the live poultry trade. Our findings highlight the live poultry trade as ARG disseminators into LPMs, which serve as an interface of LPM environments even LPM workers, and that could urge Government to have better control of LPMs in China. Further studies on the factors that promote antibiotic resistance exchange between LPM environments, human commensals, and pathogens, are warranted.CONCLUSIONLive poultry trade has a significant effect on the diversity of ARGs in LPM workers, chickens, and environments in China, driven by human selection with the live poultry trade. Our findings highlight the live poultry trade as ARG disseminators into LPMs, which serve as an interface of LPM environments even LPM workers, and that could urge Government to have better control of LPMs in China. Further studies on the factors that promote antibiotic resistance exchange between LPM environments, human commensals, and pathogens, are warranted. Poultry farms and LPMs are a reservoir of antimicrobial resistant bacteria and resistance genes from feces. The LPM is an important interface between humans, farm animals, and environments in a typical urban environment, and it is considered a reservoir for ARGs and viruses. However, the antibiotic resistomes shared between chicken farms and LPMs, and that of LPM workers and people who have no contact with the LPMs remains unknown. We characterized the resistome and bacterial microbiome of farm chickens and LPMs and LPM workers and control subjects. The mobile ARGs identified in chickens and the distribution of the mcr-family genes in publicly bacterial genomes and chicken gut metagenomes was analyzed, respectively. In addition, the prevalence of mcr-1 in LPMs following the ban on colistin-positive additives in China was explored. By profiling the microbiomes and resistomes in chicken farms, LPMs, LPM workers, and LPM environments, we found that the bacterial community composition and resistomes were significantly different between the farms and the LPMs, and the LPM samples possessed more diversified ARGs (59 types) than the farms. Some mobile ARGs, such as mcr-1 and tet(X3), identified in chicken farms, LPMs, LPM workers, and LPM environments were also harbored by human clinical pathogens. Moreover, we found that the resistomes were significantly different between the LPM workers and those who have no contact with the LPMs, and more diversified ARGs (188 types) were observed in the LPM workers. It is also worth noting that mcr-10 was identified in both human (5.2%, 96/1,859) and chicken (1.5%, 14/910) gut microbiomes. Although mcr-1 prevalence decreased significantly in the LPMs across the eight provinces in China, from 190/333 (57.1%) samples in September 2016-March 2017 to 208/544 (38.2%) samples in August 2018-May 2019, it is widespread and continuous in the LPMs. Live poultry trade has a significant effect on the diversity of ARGs in LPM workers, chickens, and environments in China, driven by human selection with the live poultry trade. Our findings highlight the live poultry trade as ARG disseminators into LPMs, which serve as an interface of LPM environments even LPM workers, and that could urge Government to have better control of LPMs in China. Further studies on the factors that promote antibiotic resistance exchange between LPM environments, human commensals, and pathogens, are warranted. Poultry farms and LPMs are a reservoir of antimicrobial resistant bacteria and resistance genes from feces. The LPM is an important interface between humans, farm animals, and environments in a typical urban environment, and it is considered a reservoir for ARGs and viruses. However, the antibiotic resistomes shared between chicken farms and LPMs, and that of LPM workers and people who have no contact with the LPMs remains unknown.We characterized the resistome and bacterial microbiome of farm chickens and LPMs and LPM workers and control subjects. The mobile ARGs identified in chickens and the distribution of the mcr-family genes in publicly bacterial genomes and chicken gut metagenomes was analyzed, respectively. In addition, the prevalence of mcr-1 in LPMs following the ban on colistin-positive additives in China was explored.By profiling the microbiomes and resistomes in chicken farms, LPMs, LPM workers, and LPM environments, we found that the bacterial community composition and resistomes were significantly different between the farms and the LPMs, and the LPM samples possessed more diversified ARGs (59 types) than the farms. Some mobile ARGs, such as mcr-1 and tet(X3), identified in chicken farms, LPMs, LPM workers, and LPM environments were also harbored by human clinical pathogens. Moreover, we found that the resistomes were significantly different between the LPM workers and those who have no contact with the LPMs, and more diversified ARGs (188 types) were observed in the LPM workers. It is also worth noting that mcr-10 was identified in both human (5.2%, 96/1,859) and chicken (1.5%, 14/910) gut microbiomes. Although mcr-1 prevalence decreased significantly in the LPMs across the eight provinces in China, from 190/333 (57.1%) samples in September 2016-March 2017 to 208/544 (38.2%) samples in August 2018-May 2019, it is widespread and continuous in the LPMs.Live poultry trade has a significant effect on the diversity of ARGs in LPM workers, chickens, and environments in China, driven by human selection with the live poultry trade. Our findings highlight the live poultry trade as ARG disseminators into LPMs, which serve as an interface of LPM environments even LPM workers, and that could urge Government to have better control of LPMs in China. Further studies on the factors that promote antibiotic resistance exchange between LPM environments, human commensals, and pathogens, are warranted. Background: Poultry farms and LPMs are a reservoir of antimicrobial resistant bacteria and resistance genes from feces. The LPM is an important interface between humans, farm animals, and environments in a typical urban environment, and it is considered a reservoir for ARGs and viruses. However, the antibiotic resistomes shared between chicken farms and LPMs, and that of LPM workers and people who have no contact with the LPMs remains unknown. Methods: We characterized the resistome and bacterial microbiome of farm chickens and LPMs and LPM workers and control subjects. The mobile ARGs identified in chickens and the distribution of the mcr-family genes in publicly bacterial genomes and chicken gut metagenomes was analyzed, respectively. In addition, the prevalence of mcr-1 in LPMs following the ban on colistin-positive additives in China was explored. Results: By profiling the microbiomes and resistomes in chicken farms, LPMs, LPM workers, and LPM environments, we found that the bacterial community composition and resistomes were significantly different between the farms and the LPMs, and the LPM samples possessed more diversified ARGs (59 types) than the farms. Some mobile ARGs, such as mcr-1 and tet(X3), identified in chicken farms, LPMs, LPM workers, and LPM environments were also harbored by human clinical pathogens. Moreover, we found that the resistomes were significantly different between the LPM workers and those who have no contact with the LPMs, and more diversified ARGs (188 types) were observed in the LPM workers. It is also worth noting that mcr-10 was identified in both human (5.2%, 96/1,859) and chicken (1.5%, 14/910) gut microbiomes. Although mcr-1 prevalence decreased significantly in the LPMs across the eight provinces in China, from 190/333 (57.1%) samples in September 2016-March 2017 to 208/544 (38.2%) samples in August 2018-May 2019, it is widespread and continuous in the LPMs. Conclusion: Live poultry trade has a significant effect on the diversity of ARGs in LPM workers, chickens, and environments in China, driven by human selection with the live poultry trade. Our findings highlight the live poultry trade as ARG disseminators into LPMs, which serve as an interface of LPM environments even LPM workers, and that could urge Government to have better control of LPMs in China. Further studies on the factors that promote antibiotic resistance exchange between LPM environments, human commensals, and pathogens, are warranted. •More diversified ARGs were identified the LPMs than the farms.•The live poultry trade may speed up the spread of antibiotic resistance.•LPM workers are exposed to antimicrobial resistant bacteria in LPMs.•More abundant ARGs were observed in the LPM workers than control subjects.•The prevalence of mcr-1 decreased significantly in LPMs after the ban on colistin as a growth promoter. Poultry farms and LPMs are a reservoir of antimicrobial resistant bacteria and resistance genes from feces. The LPM is an important interface between humans, farm animals, and environments in a typical urban environment, and it is considered a reservoir for ARGs and viruses. However, the antibiotic resistomes shared between chicken farms and LPMs, and that of LPM workers and people who have no contact with the LPMs remains unknown. We characterized the resistome and bacterial microbiome of farm chickens and LPMs and LPM workers and control subjects. The mobile ARGs identified in chickens and the distribution of the mcr-family genes in publicly bacterial genomes and chicken gut metagenomes was analyzed, respectively. In addition, the prevalence of mcr-1 in LPMs following the ban on colistin-positive additives in China was explored. By profiling the microbiomes and resistomes in chicken farms, LPMs, LPM workers, and LPM environments, we found that the bacterial community composition and resistomes were significantly different between the farms and the LPMs, and the LPM samples possessed more diversified ARGs (59 types) than the farms. Some mobile ARGs, such as mcr-1 and tet(X3), identified in chicken farms, LPMs, LPM workers, and LPM environments were also harbored by human clinical pathogens. Moreover, we found that the resistomes were significantly different between the LPM workers and those who have no contact with the LPMs, and more diversified ARGs (188 types) were observed in the LPM workers. It is also worth noting that mcr-10 was identified in both human (5.2%, 96/1,859) and chicken (1.5%, 14/910) gut microbiomes. Although mcr-1 prevalence decreased significantly in the LPMs across the eight provinces in China, from 190/333 (57.1%) samples in September 2016-March 2017 to 208/544 (38.2%) samples in August 2018-May 2019, it is widespread and continuous in the LPMs. Live poultry trade has a significant effect on the diversity of ARGs in LPM workers, chickens, and environments in China, driven by human selection with the live poultry trade. Our findings highlight the live poultry trade as ARG disseminators into LPMs, which serve as an interface of LPM environments even LPM workers, and that could urge Government to have better control of LPMs in China. Further studies on the factors that promote antibiotic resistance exchange between LPM environments, human commensals, and pathogens, are warranted. |
| ArticleNumber | 106534 |
| Author | Hu, Yongfei Song, Xiaofeng Wang, Aiping Wang, Yanan Bi, Yuhai Liu, Fei Gao, George Fu Liu, William J. Lyu, Na Zhu, Baoli Zhang, Gaiping Zhang, Zewu Cao, Jian Ma, Sufang |
| Author_xml | – sequence: 1 givenname: Yanan orcidid: 0000-0002-7461-2195 surname: Wang fullname: Wang, Yanan organization: College of Veterinary Medicine, Henan Agricultural University, Zhengzhou, Henan 450046, China – sequence: 2 givenname: Na surname: Lyu fullname: Lyu, Na organization: CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China – sequence: 3 givenname: Fei surname: Liu fullname: Liu, Fei organization: CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China – sequence: 4 givenname: William J. surname: Liu fullname: Liu, William J. organization: NHC Key Laboratory of Biosafety, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China – sequence: 5 givenname: Yuhai surname: Bi fullname: Bi, Yuhai organization: CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Center for Influenza Research and Early-warning (CASCIRE), CAS-TWAS Center of Excellence for Emerging Infectious Diseases (CEEID), Chinese Academy of Sciences, Beijing 100101, China – sequence: 6 givenname: Zewu surname: Zhang fullname: Zhang, Zewu organization: Dongguan Municipal Center for Disease Control and Prevention, Dongguan 523129, China – sequence: 7 givenname: Sufang surname: Ma fullname: Ma, Sufang organization: CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China – sequence: 8 givenname: Jian surname: Cao fullname: Cao, Jian organization: CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China – sequence: 9 givenname: Xiaofeng orcidid: 0000-0002-6789-6820 surname: Song fullname: Song, Xiaofeng organization: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing 102206, China – sequence: 10 givenname: Aiping surname: Wang fullname: Wang, Aiping organization: School of Life Sciences, Zhengzhou University, Zhengzhou 450001, China – sequence: 11 givenname: Gaiping surname: Zhang fullname: Zhang, Gaiping organization: College of Veterinary Medicine, Henan Agricultural University, Zhengzhou, Henan 450046, China – sequence: 12 givenname: Yongfei surname: Hu fullname: Hu, Yongfei email: huyongfei@cau.edu.cn organization: State Key Laboratory of Animal Nutrition, College of Animal Science and Technology, China Agricultural University, Beijing 100193, China – sequence: 13 givenname: Baoli surname: Zhu fullname: Zhu, Baoli email: zhubaoli@im.ac.cn organization: CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China – sequence: 14 givenname: George Fu surname: Gao fullname: Gao, George Fu email: gaof@im.ac.cn organization: CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/33799229$$D View this record in MEDLINE/PubMed |
| BookMark | eNqNkbtuFDEYhS0URDaBN0DIJc0sHl9mPBRIKIIkUhAN1MaX34k3s_Ziexfl7XGYhIICqCz9_s7x5TtBRzFFQOhlT9Y96Yc3mzXEQ4h1TQnt22gQjD9Bq16OrBtGQY7QqmGk4z0lx-iklA0hhHIpnqFjxsZponRaoW-fUgbswgFyCT6AwzrWYEKqweIMJZSqowV8DREKDhHbm2BvIZbGOfwj5dsWxMnjegN4bjV4l_ZzzXd4q9teLc_RU6_nAi8e1lP09eOHL2cX3dXn88uz91edFWSsnXeMjk5QrZ3xghHJmTSWMC4HJ_3IpPOCghksm3rDBs8n6zThXsPICHGcnaLLpdclvVG7HNr5dyrpoH4NUr5WOrdHzaDswFvKMC-04YPzRmouJKdMMiGoIa3r9dK1y-n7HkpV21AszLOOkPZFUSH6aRpGwv8DJVIMjPKxoa8e0L3Zgvt9x0cZDXi7ADanUjJ4ZUPVNaRYsw6z6om6N682ajGv7s2rxXwL8z_Cj_3_iL1bYtDcHAJkVWyAZtyFDLa2zwt_L_gJMkHJtg |
| CitedBy_id | crossref_primary_10_3390_ani13111804 crossref_primary_10_1016_j_jhazmat_2024_136641 crossref_primary_10_1093_jacamr_dlad090 crossref_primary_10_3389_fmicb_2022_833790 crossref_primary_10_1371_journal_pgph_0003802 crossref_primary_10_1128_spectrum_00418_22 crossref_primary_10_3390_antibiotics12121664 crossref_primary_10_1128_spectrum_01763_23 crossref_primary_10_1016_j_micres_2023_127316 crossref_primary_10_54203_scil_2024_wvj34 crossref_primary_10_3390_microbiolres15030107 crossref_primary_10_1186_s12864_024_10562_1 crossref_primary_10_3389_fmicb_2022_808744 crossref_primary_10_3389_fmicb_2022_874153 crossref_primary_10_1590_1809_6891v26e_79298e crossref_primary_10_1128_spectrum_01907_21 crossref_primary_10_1186_s40104_021_00643_6 crossref_primary_10_1016_j_scitotenv_2022_154010 crossref_primary_10_1590_1809_6891v26e_79298p crossref_primary_10_3390_antibiotics12071117 crossref_primary_10_1016_j_scitotenv_2023_161790 crossref_primary_10_3390_toxics11040374 crossref_primary_10_52810_CJNS_2024_003 crossref_primary_10_3390_microorganisms12081562 crossref_primary_10_1016_j_bsheal_2024_02_006 crossref_primary_10_1109_ACCESS_2021_3126639 crossref_primary_10_1007_s13205_024_03950_7 crossref_primary_10_36483_vanvetj_1184514 crossref_primary_10_1007_s00203_023_03476_1 crossref_primary_10_3389_fmicb_2022_822689 crossref_primary_10_1016_j_jes_2023_01_012 crossref_primary_10_3389_fcimb_2024_1484100 crossref_primary_10_3390_vetsci8110265 crossref_primary_10_1099_mgen_0_000602 crossref_primary_10_3389_fmicb_2022_969769 crossref_primary_10_1016_j_psj_2021_101675 crossref_primary_10_3390_antibiotics14030281 crossref_primary_10_1038_s41396_022_01315_7 crossref_primary_10_3390_ijerph19084758 crossref_primary_10_1007_s13198_021_01270_0 crossref_primary_10_1186_s44280_024_00050_2 crossref_primary_10_3390_antibiotics11070973 crossref_primary_10_1016_j_psj_2025_104858 crossref_primary_10_1016_j_scitotenv_2023_163511 crossref_primary_10_1186_s12866_024_03653_2 crossref_primary_10_1080_10962247_2023_2193162 crossref_primary_10_1016_j_lwt_2024_115751 crossref_primary_10_15212_ZOONOSES_2024_0060 crossref_primary_10_1016_j_jenvman_2023_117439 crossref_primary_10_1080_10643389_2024_2344453 crossref_primary_10_3389_fmicb_2024_1388658 |
| Cites_doi | 10.1093/jac/dkz235 10.1016/j.jinf.2019.03.012 10.1038/s41564-018-0205-8 10.1186/s40168-017-0288-0 10.1093/jac/dkx199 10.2217/fmb.11.135 10.1038/s41564-019-0445-2 10.1093/jac/dkaa012 10.1038/s41467-020-15222-y 10.1186/s40168-019-0632-7 10.1016/j.envint.2020.105604 10.1016/j.jinf.2020.12.029 10.1038/s41467-019-13995-5 10.1002/advs.201900038 10.1016/j.medmic.2020.100014 10.1111/1462-2920.14961 10.1093/trstmh/trw048 10.1016/S1473-3099(20)30149-3 10.1111/1462-2920.15425 10.1371/journal.ppat.1005957 10.1128/AAC.00419-13 10.1186/s40168-016-0199-5 10.1126/science.aaw1944 10.1128/mSphere.00117-20 10.1111/1574-6968.12608 10.1016/j.envint.2019.03.056 10.2807/1560-7917.ES.2017.22.31.30589 10.1093/jac/dks261 10.1038/nature13377 10.1038/nrmicro2312 10.1111/1462-2920.15171 10.1016/j.envint.2020.105649 10.1038/s41564-018-0192-9 10.1038/s41426-018-0124-z 10.1038/260040a0 10.1002/advs.201900034 10.1371/journal.pone.0091941 10.1126/science.1176950 10.1128/mBio.02317-17 10.1038/ncomms3151 10.1017/S1466252312000138 10.1016/j.envint.2019.105008 10.1016/j.chom.2016.10.022 10.1038/s42003-020-0966-5 10.1371/journal.pgen.1007389 10.1016/j.chom.2015.04.004 10.1128/mBio.00853-19 10.1016/j.envint.2020.105939 10.1080/22221751.2020.1803769 10.1093/jac/dkz510 10.1093/bioinformatics/btp336 10.1016/j.envint.2020.106005 10.1038/nature17672 10.1016/j.micpath.2020.104697 10.1126/science.aao3007 10.1016/j.jhazmat.2020.124921 10.1093/jac/dkx327 10.3390/antibiotics9030120 10.1099/vir.0.000056 10.1093/jac/dkx286 10.2807/1560-7917.ES.2016.21.27.30280 10.1016/S2666-5247(20)30005-7 10.1186/s13756-019-0672-6 10.1038/nmeth.3589 10.1093/nar/gkq275 10.1038/s41396-018-0277-8 10.1186/s40168-019-0781-8 10.1016/j.ijantimicag.2019.09.010 10.1080/22221751.2020.1732231 10.1074/jbc.RA117.000924 10.1128/AEM.01802-16 10.1128/AAC.01636-19 10.1186/s40168-020-00941-7 10.1016/j.scib.2019.12.027 10.1186/s40168-018-0590-5 10.1186/gb-2011-12-6-r60 10.1016/j.tibs.2019.06.002 10.1038/nrmicro3399-c1 10.1126/science.aay9652 10.1038/ismej.2016.90 10.1038/nbt.2942 10.1093/jac/dkaa205 10.1093/jac/dkaa037 10.1093/nar/gkw1004 10.1186/s40168-017-0369-0 10.1186/s40168-019-0696-4 10.1186/s13059-020-1947-1 10.1038/nbt.3935 10.1093/bioinformatics/btv033 10.1016/j.aggene.2017.06.001 10.1186/s40168-018-0419-2 10.1093/gigascience/giz004 10.1186/s13059-020-01964-x 10.1038/s41564-019-0496-4 10.1093/bioinformatics/bts565 10.1016/j.cell.2018.02.025 10.1016/j.jhazmat.2016.08.007 10.1038/s41564-018-0208-5 10.1016/S1473-3099(15)00533-2 10.1126/science.aao1495 10.1038/s41564-019-0503-9 10.1093/jac/dkaa372 10.1016/j.scitotenv.2016.06.208 10.1038/ismej.2014.106 10.1038/s41467-020-18475-9 10.1038/nmicrobiol.2016.260 10.1038/nrmicro.2017.28 10.1186/s13073-020-00807-5 10.1038/s41467-018-03205-z 10.1056/NEJMoa1304459 10.1021/acs.est.0c05042 10.1128/mBio.00177-16 10.1093/nar/gkt1252 10.2807/1560-7917.ES.2019.24.25.1900340 10.1016/j.envint.2020.105971 10.1128/mBio.01166-17 10.1126/science.1254664 10.1016/S1473-3099(15)00424-7 10.1128/AAC.01326-19 10.1038/s41467-018-06393-w 10.1016/S1473-3099(16)30329-2 |
| ContentType | Journal Article |
| Copyright | 2021 The Authors Copyright © 2021 The Authors. Published by Elsevier Ltd.. All rights reserved. |
| Copyright_xml | – notice: 2021 The Authors – notice: Copyright © 2021 The Authors. Published by Elsevier Ltd.. All rights reserved. |
| DBID | 6I. AAFTH AAYXX CITATION CGR CUY CVF ECM EIF NPM 7X8 7S9 L.6 DOA |
| DOI | 10.1016/j.envint.2021.106534 |
| DatabaseName | ScienceDirect Open Access Titles Elsevier:ScienceDirect:Open Access CrossRef Medline MEDLINE MEDLINE (Ovid) MEDLINE MEDLINE PubMed MEDLINE - Academic AGRICOLA AGRICOLA - Academic DOAJ Directory of Open Access Journals |
| DatabaseTitle | CrossRef MEDLINE Medline Complete MEDLINE with Full Text PubMed MEDLINE (Ovid) MEDLINE - Academic AGRICOLA AGRICOLA - Academic |
| DatabaseTitleList | MEDLINE - Academic MEDLINE AGRICOLA |
| Database_xml | – sequence: 1 dbid: DOA name: DOAJ Directory of Open Access Journals url: https://www.doaj.org/ sourceTypes: Open Website – sequence: 2 dbid: NPM name: PubMed url: https://proxy.k.utb.cz/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed sourceTypes: Index Database – sequence: 3 dbid: EIF name: MEDLINE url: https://proxy.k.utb.cz/login?url=https://www.webofscience.com/wos/medline/basic-search sourceTypes: Index Database |
| DeliveryMethod | fulltext_linktorsrc |
| Discipline | Engineering Public Health Environmental Sciences |
| EISSN | 1873-6750 |
| ExternalDocumentID | oai_doaj_org_article_c64e73b3f5ab46dfb8a45842383552b0 33799229 10_1016_j_envint_2021_106534 S0160412021001598 |
| Genre | Research Support, Non-U.S. Gov't Journal Article |
| GeographicLocations | China |
| GeographicLocations_xml | – name: China |
| GroupedDBID | --- --K --M .~1 0R~ 0SF 1B1 1RT 1~. 1~5 29G 4.4 457 4G. 53G 5GY 5VS 6I. 7-5 71M 8P~ 9JM AABNK AACTN AAEDT AAEDW AAFTH AAFWJ AAIAV AAIKJ AAKOC AALRI AAOAW AAQFI AAQXK AAXUO ABEFU ABFNM ABFYP ABJNI ABLST ABMAC ABXDB ABYKQ ACDAQ ACGFS ACRLP ADEZE ADMUD AEBSH AEKER AENEX AFKWA AFPKN AFTJW AFXIZ AGHFR AGUBO AGYEJ AHEUO AHHHB AIEXJ AIKHN AITUG AJBFU AJOXV AKIFW ALMA_UNASSIGNED_HOLDINGS AMFUW AMRAJ ASPBG AVWKF AXJTR AZFZN BKOJK BLECG BLXMC CS3 DU5 EBS EFJIC EFLBG EJD EO8 EO9 EP2 EP3 F5P FDB FEDTE FGOYB FIRID FNPLU FYGXN G-2 G-Q GBLVA GROUPED_DOAJ HMC HVGLF HZ~ IHE J1W K-O KCYFY KOM LY9 M41 MO0 N9A NCXOZ O-L O9- OAUVE OK1 OZT P-8 P-9 P2P PC. Q38 R2- RIG RNS ROL RPZ SCC SDF SDG SDP SEN SES SEW SSJ SSZ T5K TN5 WUQ XPP ~02 ~G- AAHBH AATTM AAXKI AAYWO AAYXX ABWVN ACRPL ACVFH ADCNI ADNMO ADVLN AEGFY AEIPS AEUPX AFJKZ AFPUW AGCQF AGQPQ AGRNS AIGII AIIUN AKBMS AKRWK AKYEP ANKPU APXCP BNPGV CITATION SSH CGR CUY CVF ECM EFKBS EIF NPM 7X8 7S9 L.6 |
| ID | FETCH-LOGICAL-c507t-fd327d52aadbf5308438bc03486d8f738df52eb6c391b36f49cda04fae7300d43 |
| IEDL.DBID | DOA |
| ISSN | 0160-4120 1873-6750 |
| IngestDate | Wed Aug 27 01:23:17 EDT 2025 Mon Jul 21 11:54:36 EDT 2025 Fri Jul 11 16:29:22 EDT 2025 Mon Jul 21 05:57:47 EDT 2025 Thu Apr 24 22:50:53 EDT 2025 Tue Jul 01 02:38:10 EDT 2025 Fri Feb 23 02:46:05 EST 2024 |
| IsDoiOpenAccess | true |
| IsOpenAccess | true |
| IsPeerReviewed | true |
| IsScholarly | true |
| Keywords | Metagenomics Tigecycline resistance Live poultry market workers Antibiotic resistome Occupational exposure Colistin resistance Public health |
| Language | English |
| License | This is an open access article under the CC BY license. Copyright © 2021 The Authors. Published by Elsevier Ltd.. All rights reserved. |
| LinkModel | DirectLink |
| MergedId | FETCHMERGED-LOGICAL-c507t-fd327d52aadbf5308438bc03486d8f738df52eb6c391b36f49cda04fae7300d43 |
| Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 |
| ORCID | 0000-0002-7461-2195 0000-0002-6789-6820 |
| OpenAccessLink | https://doaj.org/article/c64e73b3f5ab46dfb8a45842383552b0 |
| PMID | 33799229 |
| PQID | 2508563247 |
| PQPubID | 23479 |
| ParticipantIDs | doaj_primary_oai_doaj_org_article_c64e73b3f5ab46dfb8a45842383552b0 proquest_miscellaneous_2551996704 proquest_miscellaneous_2508563247 pubmed_primary_33799229 crossref_citationtrail_10_1016_j_envint_2021_106534 crossref_primary_10_1016_j_envint_2021_106534 elsevier_sciencedirect_doi_10_1016_j_envint_2021_106534 |
| ProviderPackageCode | CITATION AAYXX |
| PublicationCentury | 2000 |
| PublicationDate | August 2021 2021-08-00 20210801 2021-08-01 |
| PublicationDateYYYYMMDD | 2021-08-01 |
| PublicationDate_xml | – month: 08 year: 2021 text: August 2021 |
| PublicationDecade | 2020 |
| PublicationPlace | Netherlands |
| PublicationPlace_xml | – name: Netherlands |
| PublicationTitle | Environment international |
| PublicationTitleAlternate | Environ Int |
| PublicationYear | 2021 |
| Publisher | Elsevier Ltd Elsevier |
| Publisher_xml | – name: Elsevier Ltd – name: Elsevier |
| References | Ye, H., Li, Y., Li, Z., et al., 2016. Diversified mcr-1-harbouring plasmid reservoirs confer resistance to colistin in human gut microbiota. mBio. 7, e00177. doi: 10.1128/mBio.00177-16. Li, Jia, Cai (b0225) 2014; 32 Cao, Hu, Liu (b0045) 2020; 8 Sun, Chen, Cui (b0400) 2019; 4 Chen, Cui, Yu (b0060) 2020; 12 Wang, Zhang, Li (b0525) 2017; 2 Glendinning, Stewart, Pallen (b0145) 2020; 21 Zhang, Dong, Shen (b0620) 2020; 11 Van Boeckel, Pires, Silvester (b0440) 2019; 365 He, Wei, Li (b0160) 2019; 75 Walsh, Wu (b0460) 2016; 16 Yamaguchi, T., Kawahara, R., Hamamoto, K., et al., 2020. High prevalence of colistin-resistant Escherichia coli with chromosomally carried mcr-1 in healthy residents in Vietnam. mSphere 5: e00117-20. doi: 10.1128/mSphere.00117-20. Ullah, Ji, Li (b0430) 2021; 23 Wang, Hu, Liu (b0500) 2020; 138 Wang, Hu, Cao (b0490) 2019; 78 Zhang, Wei, Huang (b0610) 2019; 6 Zhu, Lomsadze, Borodovsky (b0635) 2010; 38 Tian, Liu, Zhang (b0415) 2019; 131 McArthur, Waglechner, Nizam (b0285) 2013; 57 Xu, Lv, Shen (b0545) 2020; 144 Shen, Lv, Yang (b0375) 2019; 130 Fu, Niu, Zhu (b0105) 2012; 28 . Carattoli, Villa, Feudi (b0050) 2017; 22 Xavier, B.B., Lammens, C., Ruhal, R., et al., 2016. Identification of a novel plasmid-mediated colistin-resistance gene, mcr-2, in Escherichia coli, Belgium, June 2016. Euro Surveill. 21. doi: 10.2807/1560-7917.ES.2016.21.27.30280. Bengtsson-Palme, Larsson (b0025) 2015; 13 Wang, Hu, Gao (b0495) 2020; 3 Zhou, Wang, Zhao (b0625) 2016; 320 Levy, FitzGerald, Macone (b0215) 1976; 260 Xu, Sangthong, McNeil (b0550) 2020; 9 Yang, Li, Lei (b0575) 2018; 73 Oakley, Lillehoj, Kogut (b0305) 2014; 360 Dhakan, Maji, Sharma (b0075) 2019; 8 Gao, Shao, Luo (b0130) 2016; 572 AbuOun, Stubberfield, Duggett (b0005) 2017; 72 Yelin, Kishony (b0585) 2018; 172 Wang, Liu, Zhu (b0510) 2020; 65 Wang, Wang, Zhou (b0485) 2018; 7 Gibson, Forsberg, Dantas (b0140) 2015; 9 Huang, Zhang, Xiao (b0195) 2018; 6 Quince, Walker, Simpson (b0335) 2017; 35 Li, Yu, Li (b0235) 2009; 25 Zankari, Hasman, Cosentino (b0600) 2012; 67 Shen, Zhou, Xu (b0385) 2018; 3 Forsberg, Patel, Gibson (b0095) 2014; 509 Li, Liu, Luo (b0220) 2015; 31 Luiken, Van Gompel, Munk (b0270) 2019; 74 Luiken, Van Gompel, Bossers (b0265) 2020; 143 Zhang, Srinivas, Xu (b0605) 2019; 44 Bi, Mei, Shi (bib641) 2015; 96 Gao, Cao, Hu (b0125) 2013; 368 Shen, Zhong, Yang (b0370) 2020; 1 Sun, Liao, D'Souza (b0405) 2020; 11 Hu, Liu, Lin (b0180) 2016; 16 Duarte, Roder, Van Gompel (b0085) 2020; 11 Munk, Knudsen, Lukjacenko (b0300) 2018; 3 He, Wang, Zhao (b0150) 2020; 75 Zhu, Zhang, Wang (b0630) 2019; 2020 Bi, Chen, Wang (b0035) 2016; 20 Ling, Yin, Shen (b0245) 2020; 75 Van Gompel, Luiken, Hansen (b0450) 2020; 143 Ding, Saw, Tan (b0080) 2020; 75 Pehrsson, Tsukayama, Patel (b0325) 2016; 533 Sommer, Dantas, Church (b0390) 2009; 325 He, Wei, Zhang (b0165) 2021; 55 Backhed, Roswall, Peng (b0015) 2015; 17 Xiong, Wang, Sun (b0540) 2018; 6 O'Neill, J., 2014. The review on antimicrobial resistance. Antimicrobial resistance: Tackling a crisis for the health and wealth of nations. 2014. Hu, Yang, Li (b0185) 2016; 82 Li, Sun, Song (b0240) 2020; 55 Truong, Franzosa, Tickle (b0425) 2015; 12 Gao, Hu, Li (b0345) 2016; 12 Van der Helm, Imamovic, Hashim Ellabaan (b0445) 2017; 45 Tang, B., Yang, H., Jia, X., et al., 2020. Coexistence and characterization of Tet(X5) and NDM-3 in the MDR-Acinetobacter indicus of duck origin. Microb Pathog. 150: 104697. doi: 10.1016/j.micpath.2020.104697. Xu, Y., Wei, W., Lei, S., et al., 2018b. An evolutionarily conserved mechanism for intrinsic and transferable polymyxin resistance. mBio. 9: e02317-17. doi: 10.1128/mBio.02317-17. Liu, Zhai, Song (b0250) 2020; 75 Mencía-Ares, Cabrera-Rubio, Cobo-Díaz (b0290) 2020; 8 Wang, Liu, Lv (b0470) 2019; 64 Holman, Yang, Alexander (b0175) 2019; 7 Liu, Wang, Walsh (b0260) 2016; 16 Allen, Donato, Wang (b0010) 2010; 8 Pal, Bengtsson-Palme, Rensing (b0315) 2014; 42 Bai, Du, Du (b0020) 2019; 24 Pal, Bengtsson-Palme, Kristiansson (b0310) 2016; 4 He, Wang, Liu (b0155) 2019; 4 Wang, Sun, Li (b0475) 2017; 5 Wang, Li, Lyu (b0505) 2021 Gasparrini, Markley, Kumar (b0135) 2020; 3 Crofts, Gasparrini, Dantas (b0070) 2017; 15 Liu, Dyall-Smith, Marenda (b0255) 2020; 9 Robinson, Bu, Carrique-Mas (b0340) 2016; 110 Wang, Feng, Liu (b0465) 2020; 9 Subbiah, Caudell, Mair (b0395) 2020; 11 Wang, Liu, Zhu (b0515) 2020; 80 Li, Liu, Peng (b0230) 2019; 63 Wang, Xu, Zhang (b0520) 2020; 20 Schmieder (b0355) 2012; 7 Wei, Srinivas, Lin (b0530) 2018; 14 Enault, Briet, Bouteille (b0090) 2017; 11 Sergeant, Constantinidou, Cogan (b0365) 2014; 9 Bengtsson-Palme, Larsson, Kristiansson (b0030) 2017; 72 Hu, Yang, Qin (b0190) 2013; 4 Sáenz, Marques, Barone (b0350) 2019; 7 Walsh (b0455) 2018; 3 Mazhar, Li, Rashid (b0280) 2020; 755 Moore (b0295) 2019; 365 Ju, Beck, Yin (b0210) 2018; 13 Qin, Liang, Wu (b0330) 2020; 21 Segata, Izard, Waldron (b0360) 2011; 12 Tong, Ji, Chen (b0420) 2017; 5 Van Boeckel, Glennon, Chen (b0435) 2017; 357 Borowiak, Fischer, Hammerl (b0040) 2017; 72 Zhang, Zong, Lei (b0615) 2019; 6 Shen, Zhang, Schwarz (b0380) 2020; 22 Xu, Liu, Zhang (b0565) 2021 Hernando-Amado, Coque, Baquero (b0170) 2019; 4 Xu, Lin, Cui (b0555) 2018; 293 Gao (b0115) 2014; 344 Yeoman, C.J., Chia, N., Jeraldo, P.S., et al., 2012. The microbiome of the chicken gastrointestinal tract. Anim Health Res Rev 13, 89–99. doi: 10.1017/S1466252312000138. Zhu, Gillings, Simonet (b0640) 2017; 357 Yin, W., Li, H., Shen, Y., et al., 2017. Novel plasmid-mediated colistin resistance gene mcr-3 in Escherichia coli. mBio. 8: e00543-17. doi: 10.1128/mBio.00543-17. Jia, Raphenya, Alcock (b0205) 2017; 45 Gao (b0120) 2018; 172 Fu, Chen, Liu (b0110) 2021; 409 Carroll, L.M., Gaballa, A., Guldimann, C., et al., 2019. Identification of novel mobilized colistin resistance gene mcr-9 in a multidrug-resistant, colistin-susceptible Salmonella enterica serotype Typhimurium isolate. mBio. 10: e00853-19. doi: 10.1128/mBio.00853-19. Ma, Li, Jiang (b0275) 2017; 5 Fouladi, Bailey, Patterson (b0100) 2020; 138 Cheng, Chen, Liu (b0065) 2020; 9 Pärnänen, Karkman, Hultman (b0320) 2018; 9 Wang, van Dorp, Shaw (b0480) 2018; 9 Segata (10.1016/j.envint.2021.106534_b0360) 2011; 12 Cao (10.1016/j.envint.2021.106534_b0045) 2020; 8 Enault (10.1016/j.envint.2021.106534_b0090) 2017; 11 Schmieder (10.1016/j.envint.2021.106534_b0355) 2012; 7 Zhu (10.1016/j.envint.2021.106534_b0640) 2017; 357 Robinson (10.1016/j.envint.2021.106534_b0340) 2016; 110 Zhang (10.1016/j.envint.2021.106534_b0605) 2019; 44 Levy (10.1016/j.envint.2021.106534_b0215) 1976; 260 Li (10.1016/j.envint.2021.106534_b0225) 2014; 32 Li (10.1016/j.envint.2021.106534_b0230) 2019; 63 Ma (10.1016/j.envint.2021.106534_b0275) 2017; 5 Shen (10.1016/j.envint.2021.106534_b0370) 2020; 1 Sommer (10.1016/j.envint.2021.106534_b0390) 2009; 325 Liu (10.1016/j.envint.2021.106534_b0255) 2020; 9 Backhed (10.1016/j.envint.2021.106534_b0015) 2015; 17 Shen (10.1016/j.envint.2021.106534_b0375) 2019; 130 Pehrsson (10.1016/j.envint.2021.106534_b0325) 2016; 533 Wang (10.1016/j.envint.2021.106534_b0470) 2019; 64 Wang (10.1016/j.envint.2021.106534_b0520) 2020; 20 Van Gompel (10.1016/j.envint.2021.106534_b0450) 2020; 143 Luiken (10.1016/j.envint.2021.106534_b0270) 2019; 74 Carattoli (10.1016/j.envint.2021.106534_b0050) 2017; 22 Luiken (10.1016/j.envint.2021.106534_b0265) 2020; 143 AbuOun (10.1016/j.envint.2021.106534_b0005) 2017; 72 Liu (10.1016/j.envint.2021.106534_b0260) 2016; 16 Wang (10.1016/j.envint.2021.106534_b0495) 2020; 3 Bai (10.1016/j.envint.2021.106534_b0020) 2019; 24 Duarte (10.1016/j.envint.2021.106534_b0085) 2020; 11 Wang (10.1016/j.envint.2021.106534_b0505) 2021 He (10.1016/j.envint.2021.106534_b0165) 2021; 55 Subbiah (10.1016/j.envint.2021.106534_b0395) 2020; 11 Gibson (10.1016/j.envint.2021.106534_b0140) 2015; 9 Zhou (10.1016/j.envint.2021.106534_b0625) 2016; 320 Qin (10.1016/j.envint.2021.106534_b0330) 2020; 21 Holman (10.1016/j.envint.2021.106534_b0175) 2019; 7 Truong (10.1016/j.envint.2021.106534_b0425) 2015; 12 Wang (10.1016/j.envint.2021.106534_b0465) 2020; 9 Zhang (10.1016/j.envint.2021.106534_b0610) 2019; 6 Sun (10.1016/j.envint.2021.106534_b0405) 2020; 11 Tian (10.1016/j.envint.2021.106534_b0415) 2019; 131 Pal (10.1016/j.envint.2021.106534_b0315) 2014; 42 Sergeant (10.1016/j.envint.2021.106534_b0365) 2014; 9 Bi (10.1016/j.envint.2021.106534_bib641) 2015; 96 Li (10.1016/j.envint.2021.106534_b0235) 2009; 25 Glendinning (10.1016/j.envint.2021.106534_b0145) 2020; 21 10.1016/j.envint.2021.106534_b0535 Wang (10.1016/j.envint.2021.106534_b0515) 2020; 80 Dhakan (10.1016/j.envint.2021.106534_b0075) 2019; 8 Yang (10.1016/j.envint.2021.106534_b0575) 2018; 73 10.1016/j.envint.2021.106534_b0410 Ling (10.1016/j.envint.2021.106534_b0245) 2020; 75 Sun (10.1016/j.envint.2021.106534_b0400) 2019; 4 Gao (10.1016/j.envint.2021.106534_b0130) 2016; 572 Moore (10.1016/j.envint.2021.106534_b0295) 2019; 365 Li (10.1016/j.envint.2021.106534_b0240) 2020; 55 Sáenz (10.1016/j.envint.2021.106534_b0350) 2019; 7 Xiong (10.1016/j.envint.2021.106534_b0540) 2018; 6 Bi (10.1016/j.envint.2021.106534_b0035) 2016; 20 Zankari (10.1016/j.envint.2021.106534_b0600) 2012; 67 Shen (10.1016/j.envint.2021.106534_b0385) 2018; 3 Van Boeckel (10.1016/j.envint.2021.106534_b0435) 2017; 357 Xu (10.1016/j.envint.2021.106534_b0550) 2020; 9 Yelin (10.1016/j.envint.2021.106534_b0585) 2018; 172 Li (10.1016/j.envint.2021.106534_b0220) 2015; 31 Quince (10.1016/j.envint.2021.106534_b0335) 2017; 35 Wang (10.1016/j.envint.2021.106534_b0490) 2019; 78 Tong (10.1016/j.envint.2021.106534_b0420) 2017; 5 Hu (10.1016/j.envint.2021.106534_b0185) 2016; 82 Van Boeckel (10.1016/j.envint.2021.106534_b0440) 2019; 365 Fouladi (10.1016/j.envint.2021.106534_b0100) 2020; 138 Wang (10.1016/j.envint.2021.106534_b0485) 2018; 7 Cheng (10.1016/j.envint.2021.106534_b0065) 2020; 9 Pärnänen (10.1016/j.envint.2021.106534_b0320) 2018; 9 Zhang (10.1016/j.envint.2021.106534_b0620) 2020; 11 Mencía-Ares (10.1016/j.envint.2021.106534_b0290) 2020; 8 Bengtsson-Palme (10.1016/j.envint.2021.106534_b0030) 2017; 72 Fu (10.1016/j.envint.2021.106534_b0105) 2012; 28 Xu (10.1016/j.envint.2021.106534_b0555) 2018; 293 10.1016/j.envint.2021.106534_b0590 Ullah (10.1016/j.envint.2021.106534_b0430) 2021; 23 Walsh (10.1016/j.envint.2021.106534_b0460) 2016; 16 Bengtsson-Palme (10.1016/j.envint.2021.106534_b0025) 2015; 13 Gao (10.1016/j.envint.2021.106534_b0120) 2018; 172 10.1016/j.envint.2021.106534_b0595 Hu (10.1016/j.envint.2021.106534_b0180) 2016; 16 Wang (10.1016/j.envint.2021.106534_b0525) 2017; 2 Zhang (10.1016/j.envint.2021.106534_b0615) 2019; 6 Pal (10.1016/j.envint.2021.106534_b0310) 2016; 4 Hu (10.1016/j.envint.2021.106534_b0190) 2013; 4 Walsh (10.1016/j.envint.2021.106534_b0455) 2018; 3 Mazhar (10.1016/j.envint.2021.106534_b0280) 2020; 755 Ju (10.1016/j.envint.2021.106534_b0210) 2018; 13 Zhu (10.1016/j.envint.2021.106534_b0630) 2019; 2020 10.1016/j.envint.2021.106534_b0580 Gao (10.1016/j.envint.2021.106534_b0125) 2013; 368 Jia (10.1016/j.envint.2021.106534_b0205) 2017; 45 Wei (10.1016/j.envint.2021.106534_b0530) 2018; 14 Forsberg (10.1016/j.envint.2021.106534_b0095) 2014; 509 Gao (10.1016/j.envint.2021.106534_b0115) 2014; 344 Xu (10.1016/j.envint.2021.106534_b0545) 2020; 144 Crofts (10.1016/j.envint.2021.106534_b0070) 2017; 15 Wang (10.1016/j.envint.2021.106534_b0500) 2020; 138 Munk (10.1016/j.envint.2021.106534_b0300) 2018; 3 10.1016/j.envint.2021.106534_b0055 Allen (10.1016/j.envint.2021.106534_b0010) 2010; 8 Van der Helm (10.1016/j.envint.2021.106534_b0445) 2017; 45 Borowiak (10.1016/j.envint.2021.106534_b0040) 2017; 72 Fu (10.1016/j.envint.2021.106534_b0110) 2021; 409 10.1016/j.envint.2021.106534_b0570 Gasparrini (10.1016/j.envint.2021.106534_b0135) 2020; 3 Zhu (10.1016/j.envint.2021.106534_b0635) 2010; 38 Huang (10.1016/j.envint.2021.106534_b0195) 2018; 6 Wang (10.1016/j.envint.2021.106534_b0510) 2020; 65 He (10.1016/j.envint.2021.106534_b0160) 2019; 75 Liu (10.1016/j.envint.2021.106534_b0250) 2020; 75 He (10.1016/j.envint.2021.106534_b0150) 2020; 75 He (10.1016/j.envint.2021.106534_b0155) 2019; 4 Shen (10.1016/j.envint.2021.106534_b0380) 2020; 22 Ding (10.1016/j.envint.2021.106534_b0080) 2020; 75 Oakley (10.1016/j.envint.2021.106534_b0305) 2014; 360 Chen (10.1016/j.envint.2021.106534_b0060) 2020; 12 McArthur (10.1016/j.envint.2021.106534_b0285) 2013; 57 Xu (10.1016/j.envint.2021.106534_b0565) 2021 Gao (10.1016/j.envint.2021.106534_b0345) 2016; 12 10.1016/j.envint.2021.106534_b0560 Hernando-Amado (10.1016/j.envint.2021.106534_b0170) 2019; 4 Wang (10.1016/j.envint.2021.106534_b0475) 2017; 5 10.1016/j.envint.2021.106534_b0200 Wang (10.1016/j.envint.2021.106534_b0480) 2018; 9 |
| References_xml | – volume: 12 start-page: R60 year: 2011 ident: b0360 article-title: Metagenomic biomarker discovery and explanation publication-title: Genome Biol. – volume: 65 start-page: 340 year: 2020 end-page: 342 ident: b0510 article-title: Discovery of tigecycline resistance genes publication-title: Sci Bull. – volume: 138 year: 2020 ident: b0500 article-title: Integrated metagenomic and metatranscriptomic profiling reveals differentially expressed resistomes in human, chicken, and pig gut microbiomes publication-title: Environ. Int. – volume: 3 start-page: 241 year: 2020 ident: b0135 article-title: Tetracycline-inactivating enzymes from environmental, human commensal, and pathogenic bacteria cause broad-spectrum tetracycline resistance publication-title: Commun Biol. – volume: 368 start-page: 1888 year: 2013 end-page: 1897 ident: b0125 article-title: Human infection with a novel avian-origin influenza A (H7N9) virus publication-title: N. Engl. J. Med. – volume: 9 start-page: 3891 year: 2018 ident: b0320 article-title: Maternal gut and breast milk microbiota affect infant gut antibiotic resistome and mobile genetic elements publication-title: Nat. Commun. – volume: 16 start-page: 1102 year: 2016 end-page: 1103 ident: b0460 article-title: China bans colistin as a feed additive for animals publication-title: Lancet Infect. Dis. – volume: 11 start-page: 228 year: 2020 ident: b0395 article-title: Antimicrobial resistant enteric bacteria are widely distributed amongst people, animals and the environment in Tanzania publication-title: Nat. Commun. – volume: 22 start-page: 30589 year: 2017 ident: b0050 article-title: Novel plasmid-mediated colistin resistance publication-title: Euro. Surveill. – volume: 144 year: 2020 ident: b0545 article-title: Metagenomic insights into differences in environmental resistome profiles between integrated and monoculture aquaculture farms in China publication-title: Environ. Int. – year: 2021 ident: b0565 article-title: Co-production of Tet(X) and MCR-1, two resistance enzymes by a single plasmid publication-title: Environ. Microbiol. – volume: 96 start-page: 975 year: 2015 end-page: 981 ident: bib641 article-title: Two novel reassortants of avian influenza A (H5N6) virus in China publication-title: J. Gen. Virol. – volume: 75 start-page: 3087 year: 2020 end-page: 3095 ident: b0245 article-title: Epidemiology of mobile colistin resistance genes publication-title: J. Antimicrob. Chemother. – volume: 365 start-page: 1251 year: 2019 end-page: 1252 ident: b0295 article-title: Changes in antibiotic resistance in animals publication-title: Science – volume: 172 year: 2018 ident: b0585 article-title: Antibiotic Resistance publication-title: Cell – volume: 13 start-page: 346 year: 2018 end-page: 360 ident: b0210 article-title: Wastewater treatment plant resistomes are shaped by bacterial composition, genetic exchange, and upregulated expression in the effluent microbiomes publication-title: ISME J. – volume: 22 start-page: 2469 year: 2020 end-page: 2484 ident: b0380 article-title: Farm animals and aquaculture: significant reservoirs of mobile colistin resistance genes publication-title: Environ. Microbiol. – volume: 45 year: 2017 ident: b0445 article-title: Rapid resistome mapping using nanopore sequencing publication-title: Nucleic Acids Res. – volume: 320 start-page: 10 year: 2016 end-page: 17 ident: b0625 article-title: Prevalence and dissemination of antibiotic resistance genes and coselection of heavy metals in Chinese dairy farms publication-title: J. Hazard. Mater. – volume: 357 start-page: 1099 year: 2017 end-page: 1100 ident: b0640 article-title: Microbial mass movements publication-title: Science – volume: 4 start-page: 54 year: 2016 ident: b0310 article-title: The structure and diversity of human, animal and environmental resistomes publication-title: Microbiome. – volume: 75 start-page: 764 year: 2019 end-page: 766 ident: b0160 article-title: Co-existence of publication-title: J. Antimicrob. Chemother. – volume: 16 start-page: 146 year: 2016 end-page: 147 ident: b0180 article-title: Dissemination of the publication-title: Lancet Infect. Dis. – volume: 4 start-page: 1457 year: 2019 end-page: 1464 ident: b0400 article-title: Plasmid-encoded publication-title: Nat. Microbiol. – volume: 533 start-page: 212 year: 2016 end-page: 216 ident: b0325 article-title: Interconnected microbiomes and resistomes in low-income human habitats publication-title: Nature – volume: 3 start-page: 1054 year: 2018 end-page: 1062 ident: b0385 article-title: Anthropogenic and environmental factors associated with high incidence of publication-title: Nat. Microbiol. – reference: O'Neill, J., 2014. The review on antimicrobial resistance. Antimicrobial resistance: Tackling a crisis for the health and wealth of nations. 2014. – reference: Xu, Y., Wei, W., Lei, S., et al., 2018b. An evolutionarily conserved mechanism for intrinsic and transferable polymyxin resistance. mBio. 9: e02317-17. doi: 10.1128/mBio.02317-17. – volume: 72 start-page: 3317 year: 2017 end-page: 3324 ident: b0040 article-title: Identification of a novel transposon-associated phosphoethanolamine transferase gene, publication-title: J. Antimicrob. Chemother. – reference: Carroll, L.M., Gaballa, A., Guldimann, C., et al., 2019. Identification of novel mobilized colistin resistance gene mcr-9 in a multidrug-resistant, colistin-susceptible Salmonella enterica serotype Typhimurium isolate. mBio. 10: e00853-19. doi: 10.1128/mBio.00853-19. – volume: 131 year: 2019 ident: b0415 article-title: Developmental dynamics of antibiotic resistome in aerobic biofilm microbiota treating wastewater under stepwise increasing tigecycline concentrations publication-title: Environ. Int. – volume: 360 start-page: 100 year: 2014 end-page: 112 ident: b0305 article-title: The chicken gastrointestinal microbiome publication-title: FEMS Microbiol. Lett. – volume: 5 start-page: 1 year: 2017 end-page: 6 ident: b0420 article-title: Metagenome analysis of antibiotic resistance genes in fecal microbiota of chickens publication-title: Agri Gene. – volume: 8 start-page: 164 year: 2020 ident: b0290 article-title: Antimicrobial use and production system shape the fecal, environmental, and slurry resistomes of pig farms publication-title: Microbiome. – volume: 3 start-page: 898 year: 2018 end-page: 908 ident: b0300 article-title: Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries publication-title: Nat. Microbiol. – volume: 4 start-page: 1450 year: 2019 end-page: 1456 ident: b0155 article-title: Emergence of plasmid-mediated high-level tigecycline resistance genes in animals and humans publication-title: Nat. Microbiol. – volume: 7 start-page: 24 year: 2019 ident: b0350 article-title: Oral administration of antibiotics increased the potential mobility of bacterial resistance genes in the gut of the fish Piaractus mesopotamicus publication-title: Microbiome. – volume: 9 start-page: 1843 year: 2020 end-page: 1852 ident: b0065 article-title: Identification of novel tetracycline resistance gene publication-title: Emerg Microbes Infect. – reference: Xavier, B.B., Lammens, C., Ruhal, R., et al., 2016. Identification of a novel plasmid-mediated colistin-resistance gene, mcr-2, in Escherichia coli, Belgium, June 2016. Euro Surveill. 21. doi: 10.2807/1560-7917.ES.2016.21.27.30280. – volume: 78 start-page: 445 year: 2019 end-page: 453 ident: b0490 article-title: Antibiotic resistance gene reservoir in live poultry markets publication-title: J. Infect. – volume: 344 start-page: 235 year: 2014 ident: b0115 article-title: Influenza and the live poultry trade publication-title: Science – volume: 4 start-page: 1432 year: 2019 end-page: 1442 ident: b0170 article-title: Defining and combating antibiotic resistance from One Health and Global Health perspectives publication-title: Nat. Microbiol. – volume: 82 start-page: 6672 year: 2016 end-page: 6681 ident: b0185 article-title: The bacterial mobile resistome transfer network connecting the animal and human microbiomes publication-title: Appl. Environ. Microbiol. – volume: 11 year: 2020 ident: b0085 article-title: Metagenomics-based approach to source-attribution of antimicrobial resistance determinants-identification of reservoir resistome signatures publication-title: Front. Microbiol. – volume: 57 start-page: 3348 year: 2013 end-page: 3357 ident: b0285 article-title: The comprehensive antibiotic resistance database publication-title: Antimicrob. Agents Chemother. – volume: 143 year: 2020 ident: b0265 article-title: Farm dust resistomes and bacterial microbiomes in European poultry and pig farms publication-title: Environ. Int. – volume: 11 start-page: 1427 year: 2020 ident: b0405 article-title: Environmental remodeling of human gut microbiota and antibiotic resistome in livestock farms publication-title: Nat. Commun. – volume: 293 start-page: 4350 year: 2018 end-page: 4365 ident: b0555 article-title: Mechanistic insights into transferable polymyxin resistance among gut bacteria publication-title: J. Biol. Chem. – volume: 409 year: 2021 ident: b0110 article-title: Abundance of tigecycline resistance genes and association with antibiotic residues in Chinese livestock farms publication-title: J. Hazard. Mater. – volume: 23 start-page: 844 year: 2021 end-page: 860 ident: b0430 article-title: Characterization of NMCR-2, a new non-mobile colistin resistance enzyme: implications for an MCR-8 ancestor publication-title: Environ. Microbiol. – volume: 8 start-page: 251 year: 2010 end-page: 259 ident: b0010 article-title: Call of the wild: antibiotic resistance genes in natural environments publication-title: Nat. Rev. Microbiol. – volume: 9 start-page: 207 year: 2015 end-page: 216 ident: b0140 article-title: Improved annotation of antibiotic resistance determinants reveals microbial resistomes cluster by ecology publication-title: ISME J. – volume: 260 start-page: 40 year: 1976 end-page: 42 ident: b0215 article-title: Spread of antibiotic-resistant plasmids from chicken to chicken and from chicken to man publication-title: Nature – volume: 9 start-page: 10 year: 2020 ident: b0550 article-title: Antibiotic use in chicken farms in northwestern China publication-title: Antimicrob Resist Infect Control. – volume: 55 start-page: 1604 year: 2021 end-page: 1614 ident: b0165 article-title: Dissemination of the publication-title: Environ. Sci. Technol. – volume: 6 start-page: 1900038 year: 2019 ident: b0610 article-title: Definition of a family of nonmobile colistin resistance (NMCR-1) determinants suggests aquatic reservoirs for MCR-4 publication-title: Adv. Sci. – volume: 31 start-page: 1674 year: 2015 end-page: 1676 ident: b0220 article-title: MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph publication-title: Bioinformatics – volume: 110 start-page: 377 year: 2016 end-page: 380 ident: b0340 article-title: Antibiotic resistance is the quintessential One Health issue publication-title: Trans. R. Soc. Trop. Med. Hyg. – volume: 64 start-page: e01326 year: 2019 end-page: e1419 ident: b0470 article-title: Novel plasmid-mediated publication-title: Antimicrob. Agents Chemother. – volume: 4 start-page: 2151 year: 2013 ident: b0190 article-title: Metagenome-wide analysis of antibiotic resistance genes in a large cohort of human gut microbiota publication-title: Nat. Commun. – volume: 5 start-page: 70 year: 2017 ident: b0475 article-title: Expanding landscapes of the diversified publication-title: Microbiome. – volume: 15 start-page: 422 year: 2017 end-page: 434 ident: b0070 article-title: Next-generation approaches to understand and combat the antibiotic resistome publication-title: Nat. Rev. Microbiol. – volume: 8 year: 2019 ident: b0075 article-title: The unique composition of Indian gut microbiome, gene catalogue, and associated fecal metabolome deciphered using multi-omics approaches publication-title: GigaScience – volume: 143 year: 2020 ident: b0450 article-title: Description and determinants of the faecal resistome and microbiome of farmers and slaughterhouse workers: A metagenome-wide cross-sectional study publication-title: Environ. Int. – volume: 3 year: 2020 ident: b0495 article-title: Combining metagenomics and metatranscriptomics to study human, animal and environmental resistomes publication-title: Medicine Microecology. – volume: 2020 start-page: 727 year: 2019 end-page: 733 ident: b0630 article-title: A novel coronavirus from patients with pneumonia in China publication-title: N. Engl. J. Med. – volume: 75 start-page: 3480 year: 2020 end-page: 3484 ident: b0080 article-title: Emergence of tigecycline- and eravacycline-resistant publication-title: J. Antimicrob. Chemother. – volume: 75 start-page: 1428 year: 2020 end-page: 1431 ident: b0250 article-title: Identification of the novel tigecycline resistance gene publication-title: J. Antimicrob. Chemother. – volume: 6 start-page: 34 year: 2018 ident: b0540 article-title: Antibiotic-mediated changes in the fecal microbiome of broiler chickens define the incidence of antibiotic resistance genes publication-title: Microbiome. – volume: 55 year: 2020 ident: b0240 article-title: Within-host heterogeneity and flexibility of publication-title: Int. J. Antimicrob. Agents – reference: Yin, W., Li, H., Shen, Y., et al., 2017. Novel plasmid-mediated colistin resistance gene mcr-3 in Escherichia coli. mBio. 8: e00543-17. doi: 10.1128/mBio.00543-17. – volume: 1 start-page: e34 year: 2020 end-page: e43 ident: b0370 article-title: Dynamics of publication-title: Lancet Microbe. – volume: 9 start-page: 120 year: 2020 ident: b0255 article-title: Antibiotic resistance genes in antibiotic-free chicken farms publication-title: Antibiotics. – volume: 7 start-page: 122 year: 2018 ident: b0485 article-title: Emergence of a novel mobile colistin resistance gene, publication-title: Emerg Microbes Infect. – volume: 9 year: 2014 ident: b0365 article-title: Extensive microbial and functional diversity within the chicken cecal microbiome publication-title: PLoS ONE – volume: 67 start-page: 2640 year: 2012 end-page: 2644 ident: b0600 article-title: Identification of acquired antimicrobial resistance genes publication-title: J. Antimicrob. Chemother. – volume: 45 start-page: D566 year: 2017 end-page: D573 ident: b0205 article-title: CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database publication-title: Nucleic Acids Res. – volume: 11 start-page: 4648 year: 2020 ident: b0620 article-title: Epidemiological and phylogenetic analysis reveals publication-title: Nat. Commun. – reference: Tang, B., Yang, H., Jia, X., et al., 2020. Coexistence and characterization of Tet(X5) and NDM-3 in the MDR-Acinetobacter indicus of duck origin. Microb Pathog. 150: 104697. doi: 10.1016/j.micpath.2020.104697. – volume: 9 start-page: 1179 year: 2018 ident: b0480 article-title: The global distribution and spread of the mobilized colistin resistance gene publication-title: Nat. Commun. – volume: 6 start-page: 1900034 year: 2019 ident: b0615 article-title: A genomic, evolutionary, and mechanistic study of MCR-5 action suggests functional unification across the MCR family of colistin resistance publication-title: Adv. Sci. – volume: 44 start-page: 973 year: 2019 end-page: 988 ident: b0605 article-title: Genetic and biochemical mechanisms for bacterial Lipid A modifiers associated with polymyxin resistance publication-title: Trends Biochem. Sci. – volume: 130 year: 2019 ident: b0375 article-title: Integrated aquaculture contributes to the transfer of publication-title: Environ. Int. – volume: 14 year: 2018 ident: b0530 article-title: Defining ICR-Mo, an intrinsic colistin resistance determinant from publication-title: PLoS Genet. – volume: 75 start-page: 1159 year: 2020 end-page: 1164 ident: b0150 article-title: A novel tigecycline resistance gene, publication-title: J. Antimicrob. Chemother. – volume: 72 start-page: 2690 year: 2017 end-page: 2703 ident: b0030 article-title: Using metagenomics to investigate human and environmental resistomes publication-title: J. Antimicrob. Chemother. – reference: Yamaguchi, T., Kawahara, R., Hamamoto, K., et al., 2020. High prevalence of colistin-resistant Escherichia coli with chromosomally carried mcr-1 in healthy residents in Vietnam. mSphere 5: e00117-20. doi: 10.1128/mSphere.00117-20. – volume: 72 start-page: 2745 year: 2017 end-page: 2749 ident: b0005 article-title: and publication-title: J. Antimicrob. Chemother. – volume: 16 start-page: 161 year: 2016 end-page: 168 ident: b0260 article-title: Emergence of plasmid-mediated colistin resistance mechanism MCR-1 in animals and human beings in China: a microbiological and molecular biological study publication-title: Lancet Infect. Dis. – reference: Ye, H., Li, Y., Li, Z., et al., 2016. Diversified mcr-1-harbouring plasmid reservoirs confer resistance to colistin in human gut microbiota. mBio. 7, e00177. doi: 10.1128/mBio.00177-16. – volume: 509 start-page: 612 year: 2014 end-page: 616 ident: b0095 article-title: Bacterial phylogeny structures soil resistomes across habitats publication-title: Nature – volume: 11 start-page: 237 year: 2017 end-page: 247 ident: b0090 article-title: Phages rarely encode antibiotic resistance genes: a cautionary tale for virome analyses publication-title: ISME J. – volume: 38 year: 2010 ident: b0635 article-title: Ab initio gene identification in metagenomic sequences publication-title: Nucleic Acids Res. – volume: 2 start-page: 16260 year: 2017 ident: b0525 article-title: Comprehensive resistome analysis reveals the prevalence of NDM and MCR-1 in Chinese poultry production publication-title: Nat. Microbiol. – reference: Yeoman, C.J., Chia, N., Jeraldo, P.S., et al., 2012. The microbiome of the chicken gastrointestinal tract. Anim Health Res Rev 13, 89–99. doi: 10.1017/S1466252312000138. – volume: 325 start-page: 1128 year: 2009 end-page: 1131 ident: b0390 article-title: Functional characterization of the antibiotic resistance reservoir in the human microflora publication-title: Science – volume: 25 start-page: 1966 year: 2009 end-page: 1967 ident: b0235 article-title: SOAP2: an improved ultrafast tool for short read alignment publication-title: Bioinformatics – volume: 35 start-page: 833 year: 2017 end-page: 844 ident: b0335 article-title: Shotgun metagenomics, from sampling to analysis publication-title: Nat. Biotechnol. – volume: 357 start-page: 1350 year: 2017 end-page: 1352 ident: b0435 article-title: Reducing antimicrobial use in food animals publication-title: Science – volume: 365 year: 2019 ident: b0440 article-title: Global trends in antimicrobial resistance in animals in low- and middle-income countries publication-title: Science – volume: 12 start-page: 902 year: 2015 end-page: 903 ident: b0425 article-title: MetaPhlAn2 for enhanced metagenomic taxonomic profiling publication-title: Nat. Methods – volume: 28 start-page: 3150 year: 2012 end-page: 3152 ident: b0105 article-title: CD-HIT: accelerated for clustering the next-generation sequencing data publication-title: Bioinformatics – volume: 6 start-page: 211 year: 2018 ident: b0195 article-title: The chicken gut metagenome and the modulatory effects of plant-derived benzylisoquinoline alkaloids publication-title: Microbiome. – volume: 12 year: 2016 ident: b0345 article-title: Dissemination and mechanism for the MCR-1 publication-title: PLoS Pathog. – volume: 3 start-page: 854 year: 2018 end-page: 855 ident: b0455 article-title: A one-health approach to antimicrobial resistance publication-title: Nat. Microbiol. – volume: 32 start-page: 834 year: 2014 end-page: 841 ident: b0225 article-title: An integrated catalog of reference genes in the human gut microbiome publication-title: Nat. Biotechnol. – volume: 17 start-page: 690 year: 2015 end-page: 703 ident: b0015 article-title: Dynamics and stabilization of the human gut microbiome during the first year of life publication-title: Cell Host Microbe – volume: 73 year: 2018 ident: b0575 article-title: Novel plasmid-mediated colistin resistance gene publication-title: J. Antimicrob. Chemother. – volume: 63 start-page: e01636 year: 2019 end-page: e1719 ident: b0230 article-title: Co-occurrence of two publication-title: Antimicrob. Agents Chemother. – volume: 138 year: 2020 ident: b0100 article-title: Air pollution exposure is associated with the gut microbiome as revealed by shotgun metagenomic sequencing publication-title: Environ. Int. – volume: 42 start-page: D737 year: 2014 end-page: D743 ident: b0315 article-title: BacMet: antibacterial biocide and metal resistance genes database publication-title: Nucleic Acids Res. – volume: 20 start-page: 810 year: 2016 end-page: 821 ident: b0035 article-title: Genesis, evolution and prevalence of H5N6 avian influenza viruses in China publication-title: Cell Host Microbe – volume: 572 start-page: 681 year: 2016 end-page: 687 ident: b0130 article-title: Airborne bacterial contaminations in typical Chinese wet market with live poultry trade publication-title: Sci. Total Environ. – volume: 7 start-page: 86 year: 2019 ident: b0175 article-title: Antibiotic treatment in feedlot cattle: a longitudinal study of the effect of oxytetracycline and tulathromycin on the fecal and nasopharyngeal microbiota publication-title: Microbiome. – volume: 21 start-page: 55 year: 2020 ident: b0330 article-title: Longitudinal survey of microbiome associated with particulate matter in a megacity publication-title: Genome Biol. – volume: 12 start-page: 111 year: 2020 ident: b0060 article-title: Genetic diversity and characteristics of high-level tigecycline resistance Tet(X) in publication-title: Genome Med. – volume: 21 year: 2020 ident: b0145 article-title: Assembly of hundreds of novel bacterial genomes from the chicken caecum publication-title: Genome Biol. – volume: 172 start-page: 1157 year: 2018 end-page: 1159 ident: b0120 article-title: From “A”IV to “Z”IKV: Attacks from emerging and re-emerging pathogens publication-title: Cell – volume: 7 start-page: 73 year: 2012 end-page: 89 ident: b0355 article-title: Insights into antibiotic resistance through metagenomic approaches publication-title: Future Microbiol. – reference: . – volume: 80 start-page: 121 year: 2020 end-page: 142 ident: b0515 article-title: Metagenomic data screening reveals the distribution of mobilized resistance genes publication-title: J. Infect. – volume: 9 start-page: 508 year: 2020 end-page: 516 ident: b0465 article-title: Identification of novel mobile colistin resistance gene publication-title: Emerg Microbes Infect. – year: 2021 ident: b0505 article-title: Comparative genomic analysis of mobile colistin resistance gene publication-title: J. Infect. – volume: 8 start-page: 26 year: 2020 ident: b0045 article-title: Metagenomic analysis reveals the microbiome and resistome in migratory birds publication-title: Microbiome. – volume: 755 year: 2020 ident: b0280 article-title: Co-selection of antibiotic resistance genes, and mobile genetic elements in the presence of heavy metals in poultry farm environments publication-title: Sci. Total Environ. – volume: 20 start-page: 1161 year: 2020 end-page: 1171 ident: b0520 article-title: Changes in colistin resistance and publication-title: Lancet Infect. Dis. – volume: 24 start-page: 1900340 year: 2019 ident: b0020 article-title: Detection of plasmid-mediated tigecycline-resistant gene publication-title: Euro. Surveill. – volume: 5 start-page: 154 year: 2017 ident: b0275 article-title: Catalogue of antibiotic resistome and hosttracking in drinking water deciphered by a large scale survey publication-title: Microbiome. – volume: 74 start-page: 2596 year: 2019 end-page: 2604 ident: b0270 article-title: Associations between antimicrobial use and the faecal resistome on broiler farms from nine European countries publication-title: J. Antimicrob. Chemother. – volume: 13 start-page: 396 year: 2015 ident: b0025 article-title: Antibiotic resistance genes in the environment: prioritizing risks publication-title: Nat. Rev. Microbiol. – volume: 74 start-page: 2596 year: 2019 ident: 10.1016/j.envint.2021.106534_b0270 article-title: Associations between antimicrobial use and the faecal resistome on broiler farms from nine European countries publication-title: J. Antimicrob. Chemother. doi: 10.1093/jac/dkz235 – volume: 78 start-page: 445 year: 2019 ident: 10.1016/j.envint.2021.106534_b0490 article-title: Antibiotic resistance gene reservoir in live poultry markets publication-title: J. Infect. doi: 10.1016/j.jinf.2019.03.012 – volume: 3 start-page: 1054 year: 2018 ident: 10.1016/j.envint.2021.106534_b0385 article-title: Anthropogenic and environmental factors associated with high incidence of mcr-1 carriage in humans across China publication-title: Nat. Microbiol. doi: 10.1038/s41564-018-0205-8 – volume: 5 start-page: 70 year: 2017 ident: 10.1016/j.envint.2021.106534_b0475 article-title: Expanding landscapes of the diversified mcr-1-bearing plasmid reservoirs publication-title: Microbiome. doi: 10.1186/s40168-017-0288-0 – volume: 72 start-page: 2690 year: 2017 ident: 10.1016/j.envint.2021.106534_b0030 article-title: Using metagenomics to investigate human and environmental resistomes publication-title: J. Antimicrob. Chemother. doi: 10.1093/jac/dkx199 – volume: 7 start-page: 73 year: 2012 ident: 10.1016/j.envint.2021.106534_b0355 article-title: Insights into antibiotic resistance through metagenomic approaches publication-title: Future Microbiol. doi: 10.2217/fmb.11.135 – volume: 4 start-page: 1450 year: 2019 ident: 10.1016/j.envint.2021.106534_b0155 article-title: Emergence of plasmid-mediated high-level tigecycline resistance genes in animals and humans publication-title: Nat. Microbiol. doi: 10.1038/s41564-019-0445-2 – volume: 75 start-page: 1159 year: 2020 ident: 10.1016/j.envint.2021.106534_b0150 article-title: A novel tigecycline resistance gene, tet(X6), on an SXT/R391 integrative and conjugative element in a Proteus genomospecies 6 isolate of retail meat origin publication-title: J. Antimicrob. Chemother. doi: 10.1093/jac/dkaa012 – volume: 11 start-page: 1427 year: 2020 ident: 10.1016/j.envint.2021.106534_b0405 article-title: Environmental remodeling of human gut microbiota and antibiotic resistome in livestock farms publication-title: Nat. Commun. doi: 10.1038/s41467-020-15222-y – volume: 7 start-page: 24 year: 2019 ident: 10.1016/j.envint.2021.106534_b0350 article-title: Oral administration of antibiotics increased the potential mobility of bacterial resistance genes in the gut of the fish Piaractus mesopotamicus publication-title: Microbiome. doi: 10.1186/s40168-019-0632-7 – volume: 138 year: 2020 ident: 10.1016/j.envint.2021.106534_b0100 article-title: Air pollution exposure is associated with the gut microbiome as revealed by shotgun metagenomic sequencing publication-title: Environ. Int. doi: 10.1016/j.envint.2020.105604 – year: 2021 ident: 10.1016/j.envint.2021.106534_b0505 article-title: Comparative genomic analysis of mobile colistin resistance gene mcr-9 in Salmonella enterica publication-title: J. Infect. doi: 10.1016/j.jinf.2020.12.029 – volume: 11 start-page: 228 year: 2020 ident: 10.1016/j.envint.2021.106534_b0395 article-title: Antimicrobial resistant enteric bacteria are widely distributed amongst people, animals and the environment in Tanzania publication-title: Nat. Commun. doi: 10.1038/s41467-019-13995-5 – volume: 6 start-page: 1900038 year: 2019 ident: 10.1016/j.envint.2021.106534_b0610 article-title: Definition of a family of nonmobile colistin resistance (NMCR-1) determinants suggests aquatic reservoirs for MCR-4 publication-title: Adv. Sci. doi: 10.1002/advs.201900038 – volume: 3 year: 2020 ident: 10.1016/j.envint.2021.106534_b0495 article-title: Combining metagenomics and metatranscriptomics to study human, animal and environmental resistomes publication-title: Medicine Microecology. doi: 10.1016/j.medmic.2020.100014 – volume: 80 start-page: 121 year: 2020 ident: 10.1016/j.envint.2021.106534_b0515 article-title: Metagenomic data screening reveals the distribution of mobilized resistance genes tet(X), mcr and carbapenemase in animals and humans publication-title: J. Infect. – volume: 22 start-page: 2469 year: 2020 ident: 10.1016/j.envint.2021.106534_b0380 article-title: Farm animals and aquaculture: significant reservoirs of mobile colistin resistance genes publication-title: Environ. Microbiol. doi: 10.1111/1462-2920.14961 – volume: 110 start-page: 377 year: 2016 ident: 10.1016/j.envint.2021.106534_b0340 article-title: Antibiotic resistance is the quintessential One Health issue publication-title: Trans. R. Soc. Trop. Med. Hyg. doi: 10.1093/trstmh/trw048 – volume: 20 start-page: 1161 year: 2020 ident: 10.1016/j.envint.2021.106534_b0520 article-title: Changes in colistin resistance and mcr-1 abundance in Escherichia coli of animal and human origins following the ban of colistin-positive additives in China: an epidemiological comparative study publication-title: Lancet Infect. Dis. doi: 10.1016/S1473-3099(20)30149-3 – year: 2021 ident: 10.1016/j.envint.2021.106534_b0565 article-title: Co-production of Tet(X) and MCR-1, two resistance enzymes by a single plasmid publication-title: Environ. Microbiol. doi: 10.1111/1462-2920.15425 – volume: 12 year: 2016 ident: 10.1016/j.envint.2021.106534_b0345 article-title: Dissemination and mechanism for the MCR-1 publication-title: PLoS Pathog. doi: 10.1371/journal.ppat.1005957 – volume: 57 start-page: 3348 year: 2013 ident: 10.1016/j.envint.2021.106534_b0285 article-title: The comprehensive antibiotic resistance database publication-title: Antimicrob. Agents Chemother. doi: 10.1128/AAC.00419-13 – volume: 4 start-page: 54 year: 2016 ident: 10.1016/j.envint.2021.106534_b0310 article-title: The structure and diversity of human, animal and environmental resistomes publication-title: Microbiome. doi: 10.1186/s40168-016-0199-5 – volume: 365 year: 2019 ident: 10.1016/j.envint.2021.106534_b0440 article-title: Global trends in antimicrobial resistance in animals in low- and middle-income countries publication-title: Science doi: 10.1126/science.aaw1944 – ident: 10.1016/j.envint.2021.106534_b0570 doi: 10.1128/mSphere.00117-20 – volume: 360 start-page: 100 year: 2014 ident: 10.1016/j.envint.2021.106534_b0305 article-title: The chicken gastrointestinal microbiome publication-title: FEMS Microbiol. Lett. doi: 10.1111/1574-6968.12608 – volume: 130 year: 2019 ident: 10.1016/j.envint.2021.106534_b0375 article-title: Integrated aquaculture contributes to the transfer of mcr-1 between animals and humans via the aquaculture supply chain publication-title: Environ. Int. doi: 10.1016/j.envint.2019.03.056 – volume: 22 start-page: 30589 year: 2017 ident: 10.1016/j.envint.2021.106534_b0050 article-title: Novel plasmid-mediated colistin resistance mcr-4 gene in Salmonella and Escherichia coli, Italy 2013, Spain and Belgium, 2015 to 2016 publication-title: Euro. Surveill. doi: 10.2807/1560-7917.ES.2017.22.31.30589 – volume: 67 start-page: 2640 year: 2012 ident: 10.1016/j.envint.2021.106534_b0600 article-title: Identification of acquired antimicrobial resistance genes publication-title: J. Antimicrob. Chemother. doi: 10.1093/jac/dks261 – volume: 509 start-page: 612 year: 2014 ident: 10.1016/j.envint.2021.106534_b0095 article-title: Bacterial phylogeny structures soil resistomes across habitats publication-title: Nature doi: 10.1038/nature13377 – volume: 8 start-page: 251 year: 2010 ident: 10.1016/j.envint.2021.106534_b0010 article-title: Call of the wild: antibiotic resistance genes in natural environments publication-title: Nat. Rev. Microbiol. doi: 10.1038/nrmicro2312 – volume: 45 year: 2017 ident: 10.1016/j.envint.2021.106534_b0445 article-title: Rapid resistome mapping using nanopore sequencing publication-title: Nucleic Acids Res. – volume: 23 start-page: 844 year: 2021 ident: 10.1016/j.envint.2021.106534_b0430 article-title: Characterization of NMCR-2, a new non-mobile colistin resistance enzyme: implications for an MCR-8 ancestor publication-title: Environ. Microbiol. doi: 10.1111/1462-2920.15171 – volume: 138 year: 2020 ident: 10.1016/j.envint.2021.106534_b0500 article-title: Integrated metagenomic and metatranscriptomic profiling reveals differentially expressed resistomes in human, chicken, and pig gut microbiomes publication-title: Environ. Int. doi: 10.1016/j.envint.2020.105649 – volume: 3 start-page: 898 year: 2018 ident: 10.1016/j.envint.2021.106534_b0300 article-title: Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries publication-title: Nat. Microbiol. doi: 10.1038/s41564-018-0192-9 – volume: 7 start-page: 122 year: 2018 ident: 10.1016/j.envint.2021.106534_b0485 article-title: Emergence of a novel mobile colistin resistance gene, mcr-8, in NDM-producing Klebsiella pneumoniae publication-title: Emerg Microbes Infect. doi: 10.1038/s41426-018-0124-z – volume: 260 start-page: 40 year: 1976 ident: 10.1016/j.envint.2021.106534_b0215 article-title: Spread of antibiotic-resistant plasmids from chicken to chicken and from chicken to man publication-title: Nature doi: 10.1038/260040a0 – volume: 6 start-page: 1900034 year: 2019 ident: 10.1016/j.envint.2021.106534_b0615 article-title: A genomic, evolutionary, and mechanistic study of MCR-5 action suggests functional unification across the MCR family of colistin resistance publication-title: Adv. Sci. doi: 10.1002/advs.201900034 – volume: 755 year: 2020 ident: 10.1016/j.envint.2021.106534_b0280 article-title: Co-selection of antibiotic resistance genes, and mobile genetic elements in the presence of heavy metals in poultry farm environments publication-title: Sci. Total Environ. – volume: 9 year: 2014 ident: 10.1016/j.envint.2021.106534_b0365 article-title: Extensive microbial and functional diversity within the chicken cecal microbiome publication-title: PLoS ONE doi: 10.1371/journal.pone.0091941 – volume: 325 start-page: 1128 year: 2009 ident: 10.1016/j.envint.2021.106534_b0390 article-title: Functional characterization of the antibiotic resistance reservoir in the human microflora publication-title: Science doi: 10.1126/science.1176950 – ident: 10.1016/j.envint.2021.106534_b0560 doi: 10.1128/mBio.02317-17 – volume: 4 start-page: 2151 year: 2013 ident: 10.1016/j.envint.2021.106534_b0190 article-title: Metagenome-wide analysis of antibiotic resistance genes in a large cohort of human gut microbiota publication-title: Nat. Commun. doi: 10.1038/ncomms3151 – ident: 10.1016/j.envint.2021.106534_b0590 doi: 10.1017/S1466252312000138 – volume: 131 year: 2019 ident: 10.1016/j.envint.2021.106534_b0415 article-title: Developmental dynamics of antibiotic resistome in aerobic biofilm microbiota treating wastewater under stepwise increasing tigecycline concentrations publication-title: Environ. Int. doi: 10.1016/j.envint.2019.105008 – volume: 20 start-page: 810 year: 2016 ident: 10.1016/j.envint.2021.106534_b0035 article-title: Genesis, evolution and prevalence of H5N6 avian influenza viruses in China publication-title: Cell Host Microbe doi: 10.1016/j.chom.2016.10.022 – volume: 3 start-page: 241 year: 2020 ident: 10.1016/j.envint.2021.106534_b0135 article-title: Tetracycline-inactivating enzymes from environmental, human commensal, and pathogenic bacteria cause broad-spectrum tetracycline resistance publication-title: Commun Biol. doi: 10.1038/s42003-020-0966-5 – volume: 14 year: 2018 ident: 10.1016/j.envint.2021.106534_b0530 article-title: Defining ICR-Mo, an intrinsic colistin resistance determinant from Moraxella osloensis publication-title: PLoS Genet. doi: 10.1371/journal.pgen.1007389 – volume: 17 start-page: 690 year: 2015 ident: 10.1016/j.envint.2021.106534_b0015 article-title: Dynamics and stabilization of the human gut microbiome during the first year of life publication-title: Cell Host Microbe doi: 10.1016/j.chom.2015.04.004 – ident: 10.1016/j.envint.2021.106534_b0055 doi: 10.1128/mBio.00853-19 – volume: 143 year: 2020 ident: 10.1016/j.envint.2021.106534_b0450 article-title: Description and determinants of the faecal resistome and microbiome of farmers and slaughterhouse workers: A metagenome-wide cross-sectional study publication-title: Environ. Int. doi: 10.1016/j.envint.2020.105939 – volume: 9 start-page: 1843 year: 2020 ident: 10.1016/j.envint.2021.106534_b0065 article-title: Identification of novel tetracycline resistance gene tet(X14) and its co-occurrence with tet(X2) in a tigecycline-resistant and colistin-resistant Empedobacter stercoris publication-title: Emerg Microbes Infect. doi: 10.1080/22221751.2020.1803769 – volume: 75 start-page: 764 year: 2019 ident: 10.1016/j.envint.2021.106534_b0160 article-title: Co-existence of tet(X4) and mcr-1 in two porcine Escherichia coli isolates publication-title: J. Antimicrob. Chemother. doi: 10.1093/jac/dkz510 – volume: 25 start-page: 1966 year: 2009 ident: 10.1016/j.envint.2021.106534_b0235 article-title: SOAP2: an improved ultrafast tool for short read alignment publication-title: Bioinformatics doi: 10.1093/bioinformatics/btp336 – volume: 144 year: 2020 ident: 10.1016/j.envint.2021.106534_b0545 article-title: Metagenomic insights into differences in environmental resistome profiles between integrated and monoculture aquaculture farms in China publication-title: Environ. Int. doi: 10.1016/j.envint.2020.106005 – volume: 533 start-page: 212 year: 2016 ident: 10.1016/j.envint.2021.106534_b0325 article-title: Interconnected microbiomes and resistomes in low-income human habitats publication-title: Nature doi: 10.1038/nature17672 – ident: 10.1016/j.envint.2021.106534_b0410 doi: 10.1016/j.micpath.2020.104697 – volume: 357 start-page: 1099 year: 2017 ident: 10.1016/j.envint.2021.106534_b0640 article-title: Microbial mass movements publication-title: Science doi: 10.1126/science.aao3007 – volume: 2020 start-page: 727 year: 2019 ident: 10.1016/j.envint.2021.106534_b0630 article-title: A novel coronavirus from patients with pneumonia in China publication-title: N. Engl. J. Med. – volume: 409 year: 2021 ident: 10.1016/j.envint.2021.106534_b0110 article-title: Abundance of tigecycline resistance genes and association with antibiotic residues in Chinese livestock farms publication-title: J. Hazard. Mater. doi: 10.1016/j.jhazmat.2020.124921 – volume: 72 start-page: 3317 year: 2017 ident: 10.1016/j.envint.2021.106534_b0040 article-title: Identification of a novel transposon-associated phosphoethanolamine transferase gene, mcr-5, conferring colistin resistance in d-tartrate fermenting Salmonella enterica subsp. enterica serovar Paratyphi B publication-title: J. Antimicrob. Chemother. doi: 10.1093/jac/dkx327 – volume: 9 start-page: 120 year: 2020 ident: 10.1016/j.envint.2021.106534_b0255 article-title: Antibiotic resistance genes in antibiotic-free chicken farms publication-title: Antibiotics. doi: 10.3390/antibiotics9030120 – volume: 96 start-page: 975 year: 2015 ident: 10.1016/j.envint.2021.106534_bib641 article-title: Two novel reassortants of avian influenza A (H5N6) virus in China publication-title: J. Gen. Virol. doi: 10.1099/vir.0.000056 – volume: 72 start-page: 2745 year: 2017 ident: 10.1016/j.envint.2021.106534_b0005 article-title: mcr-1 and mcr-2 variant genes identified in Moraxella species isolated from pigs in Great Britain from 2014 to 2015 publication-title: J. Antimicrob. Chemother. doi: 10.1093/jac/dkx286 – ident: 10.1016/j.envint.2021.106534_b0535 doi: 10.2807/1560-7917.ES.2016.21.27.30280 – volume: 1 start-page: e34 year: 2020 ident: 10.1016/j.envint.2021.106534_b0370 article-title: Dynamics of mcr-1 prevalence and mcr-1-positive Escherichia coli after the cessation of colistin use as a feed additive for animals in China: a prospective cross-sectional and whole genome sequencing-based molecular epidemiological study publication-title: Lancet Microbe. doi: 10.1016/S2666-5247(20)30005-7 – volume: 9 start-page: 10 year: 2020 ident: 10.1016/j.envint.2021.106534_b0550 article-title: Antibiotic use in chicken farms in northwestern China publication-title: Antimicrob Resist Infect Control. doi: 10.1186/s13756-019-0672-6 – volume: 12 start-page: 902 year: 2015 ident: 10.1016/j.envint.2021.106534_b0425 article-title: MetaPhlAn2 for enhanced metagenomic taxonomic profiling publication-title: Nat. Methods doi: 10.1038/nmeth.3589 – volume: 38 year: 2010 ident: 10.1016/j.envint.2021.106534_b0635 article-title: Ab initio gene identification in metagenomic sequences publication-title: Nucleic Acids Res. doi: 10.1093/nar/gkq275 – volume: 13 start-page: 346 year: 2018 ident: 10.1016/j.envint.2021.106534_b0210 article-title: Wastewater treatment plant resistomes are shaped by bacterial composition, genetic exchange, and upregulated expression in the effluent microbiomes publication-title: ISME J. doi: 10.1038/s41396-018-0277-8 – volume: 8 start-page: 26 year: 2020 ident: 10.1016/j.envint.2021.106534_b0045 article-title: Metagenomic analysis reveals the microbiome and resistome in migratory birds publication-title: Microbiome. doi: 10.1186/s40168-019-0781-8 – volume: 55 year: 2020 ident: 10.1016/j.envint.2021.106534_b0240 article-title: Within-host heterogeneity and flexibility of mcr-1 transmission in chicken gut publication-title: Int. J. Antimicrob. Agents doi: 10.1016/j.ijantimicag.2019.09.010 – volume: 9 start-page: 508 year: 2020 ident: 10.1016/j.envint.2021.106534_b0465 article-title: Identification of novel mobile colistin resistance gene mcr-10 publication-title: Emerg Microbes Infect. doi: 10.1080/22221751.2020.1732231 – volume: 293 start-page: 4350 year: 2018 ident: 10.1016/j.envint.2021.106534_b0555 article-title: Mechanistic insights into transferable polymyxin resistance among gut bacteria publication-title: J. Biol. Chem. doi: 10.1074/jbc.RA117.000924 – volume: 82 start-page: 6672 year: 2016 ident: 10.1016/j.envint.2021.106534_b0185 article-title: The bacterial mobile resistome transfer network connecting the animal and human microbiomes publication-title: Appl. Environ. Microbiol. doi: 10.1128/AEM.01802-16 – volume: 63 start-page: e01636 year: 2019 ident: 10.1016/j.envint.2021.106534_b0230 article-title: Co-occurrence of two tet(X) variants in an Empedobacter brevis of shrimp origin publication-title: Antimicrob. Agents Chemother. doi: 10.1128/AAC.01636-19 – volume: 8 start-page: 164 year: 2020 ident: 10.1016/j.envint.2021.106534_b0290 article-title: Antimicrobial use and production system shape the fecal, environmental, and slurry resistomes of pig farms publication-title: Microbiome. doi: 10.1186/s40168-020-00941-7 – volume: 65 start-page: 340 year: 2020 ident: 10.1016/j.envint.2021.106534_b0510 article-title: Discovery of tigecycline resistance genes tet(X3) and tet(X4) in live poultry market worker gut microbiomes and the surrounded environment publication-title: Sci Bull. doi: 10.1016/j.scib.2019.12.027 – volume: 6 start-page: 211 year: 2018 ident: 10.1016/j.envint.2021.106534_b0195 article-title: The chicken gut metagenome and the modulatory effects of plant-derived benzylisoquinoline alkaloids publication-title: Microbiome. doi: 10.1186/s40168-018-0590-5 – volume: 12 start-page: R60 year: 2011 ident: 10.1016/j.envint.2021.106534_b0360 article-title: Metagenomic biomarker discovery and explanation publication-title: Genome Biol. doi: 10.1186/gb-2011-12-6-r60 – volume: 44 start-page: 973 year: 2019 ident: 10.1016/j.envint.2021.106534_b0605 article-title: Genetic and biochemical mechanisms for bacterial Lipid A modifiers associated with polymyxin resistance publication-title: Trends Biochem. Sci. doi: 10.1016/j.tibs.2019.06.002 – volume: 13 start-page: 396 year: 2015 ident: 10.1016/j.envint.2021.106534_b0025 article-title: Antibiotic resistance genes in the environment: prioritizing risks publication-title: Nat. Rev. Microbiol. doi: 10.1038/nrmicro3399-c1 – volume: 365 start-page: 1251 year: 2019 ident: 10.1016/j.envint.2021.106534_b0295 article-title: Changes in antibiotic resistance in animals publication-title: Science doi: 10.1126/science.aay9652 – volume: 11 year: 2020 ident: 10.1016/j.envint.2021.106534_b0085 article-title: Metagenomics-based approach to source-attribution of antimicrobial resistance determinants-identification of reservoir resistome signatures publication-title: Front. Microbiol. – volume: 11 start-page: 237 year: 2017 ident: 10.1016/j.envint.2021.106534_b0090 article-title: Phages rarely encode antibiotic resistance genes: a cautionary tale for virome analyses publication-title: ISME J. doi: 10.1038/ismej.2016.90 – volume: 32 start-page: 834 year: 2014 ident: 10.1016/j.envint.2021.106534_b0225 article-title: An integrated catalog of reference genes in the human gut microbiome publication-title: Nat. Biotechnol. doi: 10.1038/nbt.2942 – volume: 75 start-page: 3087 year: 2020 ident: 10.1016/j.envint.2021.106534_b0245 article-title: Epidemiology of mobile colistin resistance genes mcr-1 to mcr-9 publication-title: J. Antimicrob. Chemother. doi: 10.1093/jac/dkaa205 – volume: 75 start-page: 1428 year: 2020 ident: 10.1016/j.envint.2021.106534_b0250 article-title: Identification of the novel tigecycline resistance gene tet(X6) and its variants in Myroides, Acinetobacter and Proteus of food animal origin publication-title: J. Antimicrob. Chemother. doi: 10.1093/jac/dkaa037 – volume: 45 start-page: D566 year: 2017 ident: 10.1016/j.envint.2021.106534_b0205 article-title: CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database publication-title: Nucleic Acids Res. doi: 10.1093/nar/gkw1004 – volume: 5 start-page: 154 year: 2017 ident: 10.1016/j.envint.2021.106534_b0275 article-title: Catalogue of antibiotic resistome and hosttracking in drinking water deciphered by a large scale survey publication-title: Microbiome. doi: 10.1186/s40168-017-0369-0 – volume: 73 issue: 1791–1795 year: 2018 ident: 10.1016/j.envint.2021.106534_b0575 article-title: Novel plasmid-mediated colistin resistance gene mcr-7.1 in Klebsiella pneumoniae publication-title: J. Antimicrob. Chemother. – volume: 7 start-page: 86 year: 2019 ident: 10.1016/j.envint.2021.106534_b0175 article-title: Antibiotic treatment in feedlot cattle: a longitudinal study of the effect of oxytetracycline and tulathromycin on the fecal and nasopharyngeal microbiota publication-title: Microbiome. doi: 10.1186/s40168-019-0696-4 – ident: 10.1016/j.envint.2021.106534_b0200 – volume: 21 year: 2020 ident: 10.1016/j.envint.2021.106534_b0145 article-title: Assembly of hundreds of novel bacterial genomes from the chicken caecum publication-title: Genome Biol. doi: 10.1186/s13059-020-1947-1 – volume: 35 start-page: 833 year: 2017 ident: 10.1016/j.envint.2021.106534_b0335 article-title: Shotgun metagenomics, from sampling to analysis publication-title: Nat. Biotechnol. doi: 10.1038/nbt.3935 – volume: 31 start-page: 1674 year: 2015 ident: 10.1016/j.envint.2021.106534_b0220 article-title: MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph publication-title: Bioinformatics doi: 10.1093/bioinformatics/btv033 – volume: 5 start-page: 1 year: 2017 ident: 10.1016/j.envint.2021.106534_b0420 article-title: Metagenome analysis of antibiotic resistance genes in fecal microbiota of chickens publication-title: Agri Gene. doi: 10.1016/j.aggene.2017.06.001 – volume: 6 start-page: 34 year: 2018 ident: 10.1016/j.envint.2021.106534_b0540 article-title: Antibiotic-mediated changes in the fecal microbiome of broiler chickens define the incidence of antibiotic resistance genes publication-title: Microbiome. doi: 10.1186/s40168-018-0419-2 – volume: 8 year: 2019 ident: 10.1016/j.envint.2021.106534_b0075 article-title: The unique composition of Indian gut microbiome, gene catalogue, and associated fecal metabolome deciphered using multi-omics approaches publication-title: GigaScience doi: 10.1093/gigascience/giz004 – volume: 21 start-page: 55 year: 2020 ident: 10.1016/j.envint.2021.106534_b0330 article-title: Longitudinal survey of microbiome associated with particulate matter in a megacity publication-title: Genome Biol. doi: 10.1186/s13059-020-01964-x – volume: 4 start-page: 1457 year: 2019 ident: 10.1016/j.envint.2021.106534_b0400 article-title: Plasmid-encoded tet(X) genes that confer high-level tigecycline resistance in Escherichia coli publication-title: Nat. Microbiol. doi: 10.1038/s41564-019-0496-4 – volume: 28 start-page: 3150 year: 2012 ident: 10.1016/j.envint.2021.106534_b0105 article-title: CD-HIT: accelerated for clustering the next-generation sequencing data publication-title: Bioinformatics doi: 10.1093/bioinformatics/bts565 – volume: 172 start-page: 1157 year: 2018 ident: 10.1016/j.envint.2021.106534_b0120 article-title: From “A”IV to “Z”IKV: Attacks from emerging and re-emerging pathogens publication-title: Cell doi: 10.1016/j.cell.2018.02.025 – volume: 320 start-page: 10 year: 2016 ident: 10.1016/j.envint.2021.106534_b0625 article-title: Prevalence and dissemination of antibiotic resistance genes and coselection of heavy metals in Chinese dairy farms publication-title: J. Hazard. Mater. doi: 10.1016/j.jhazmat.2016.08.007 – volume: 3 start-page: 854 year: 2018 ident: 10.1016/j.envint.2021.106534_b0455 article-title: A one-health approach to antimicrobial resistance publication-title: Nat. Microbiol. doi: 10.1038/s41564-018-0208-5 – volume: 16 start-page: 146 year: 2016 ident: 10.1016/j.envint.2021.106534_b0180 article-title: Dissemination of the mcr-1 colistin resistance gene publication-title: Lancet Infect. Dis. doi: 10.1016/S1473-3099(15)00533-2 – volume: 357 start-page: 1350 year: 2017 ident: 10.1016/j.envint.2021.106534_b0435 article-title: Reducing antimicrobial use in food animals publication-title: Science doi: 10.1126/science.aao1495 – volume: 4 start-page: 1432 year: 2019 ident: 10.1016/j.envint.2021.106534_b0170 article-title: Defining and combating antibiotic resistance from One Health and Global Health perspectives publication-title: Nat. Microbiol. doi: 10.1038/s41564-019-0503-9 – volume: 75 start-page: 3480 year: 2020 ident: 10.1016/j.envint.2021.106534_b0080 article-title: Emergence of tigecycline- and eravacycline-resistant tet(X4)-producing Enterobacteriaceae in the gut microbiota of healthy Singaporeans publication-title: J. Antimicrob. Chemother. doi: 10.1093/jac/dkaa372 – volume: 172 issue: 1136–1136 year: 2018 ident: 10.1016/j.envint.2021.106534_b0585 article-title: Antibiotic Resistance publication-title: Cell – volume: 572 start-page: 681 year: 2016 ident: 10.1016/j.envint.2021.106534_b0130 article-title: Airborne bacterial contaminations in typical Chinese wet market with live poultry trade publication-title: Sci. Total Environ. doi: 10.1016/j.scitotenv.2016.06.208 – volume: 9 start-page: 207 year: 2015 ident: 10.1016/j.envint.2021.106534_b0140 article-title: Improved annotation of antibiotic resistance determinants reveals microbial resistomes cluster by ecology publication-title: ISME J. doi: 10.1038/ismej.2014.106 – volume: 11 start-page: 4648 year: 2020 ident: 10.1016/j.envint.2021.106534_b0620 article-title: Epidemiological and phylogenetic analysis reveals Flavobacteriaceae as potential ancestral source of tigecycline resistance gene tet(X) publication-title: Nat. Commun. doi: 10.1038/s41467-020-18475-9 – volume: 2 start-page: 16260 year: 2017 ident: 10.1016/j.envint.2021.106534_b0525 article-title: Comprehensive resistome analysis reveals the prevalence of NDM and MCR-1 in Chinese poultry production publication-title: Nat. Microbiol. doi: 10.1038/nmicrobiol.2016.260 – volume: 15 start-page: 422 year: 2017 ident: 10.1016/j.envint.2021.106534_b0070 article-title: Next-generation approaches to understand and combat the antibiotic resistome publication-title: Nat. Rev. Microbiol. doi: 10.1038/nrmicro.2017.28 – volume: 12 start-page: 111 year: 2020 ident: 10.1016/j.envint.2021.106534_b0060 article-title: Genetic diversity and characteristics of high-level tigecycline resistance Tet(X) in Acinetobacter species publication-title: Genome Med. doi: 10.1186/s13073-020-00807-5 – volume: 9 start-page: 1179 year: 2018 ident: 10.1016/j.envint.2021.106534_b0480 article-title: The global distribution and spread of the mobilized colistin resistance gene mcr-1 publication-title: Nat. Commun. doi: 10.1038/s41467-018-03205-z – volume: 368 start-page: 1888 year: 2013 ident: 10.1016/j.envint.2021.106534_b0125 article-title: Human infection with a novel avian-origin influenza A (H7N9) virus publication-title: N. Engl. J. Med. doi: 10.1056/NEJMoa1304459 – volume: 55 start-page: 1604 year: 2021 ident: 10.1016/j.envint.2021.106534_b0165 article-title: Dissemination of the tet(X)-variant genes from layer farms to manure-receiving soil and corresponding lettuce publication-title: Environ. Sci. Technol. doi: 10.1021/acs.est.0c05042 – ident: 10.1016/j.envint.2021.106534_b0580 doi: 10.1128/mBio.00177-16 – volume: 42 start-page: D737 year: 2014 ident: 10.1016/j.envint.2021.106534_b0315 article-title: BacMet: antibacterial biocide and metal resistance genes database publication-title: Nucleic Acids Res. doi: 10.1093/nar/gkt1252 – volume: 24 start-page: 1900340 year: 2019 ident: 10.1016/j.envint.2021.106534_b0020 article-title: Detection of plasmid-mediated tigecycline-resistant gene tet(X4) in Escherichia coli from pork, Sichuan and Shandong Provinces, China, February 2019 publication-title: Euro. Surveill. doi: 10.2807/1560-7917.ES.2019.24.25.1900340 – volume: 143 year: 2020 ident: 10.1016/j.envint.2021.106534_b0265 article-title: Farm dust resistomes and bacterial microbiomes in European poultry and pig farms publication-title: Environ. Int. doi: 10.1016/j.envint.2020.105971 – ident: 10.1016/j.envint.2021.106534_b0595 doi: 10.1128/mBio.01166-17 – volume: 344 start-page: 235 year: 2014 ident: 10.1016/j.envint.2021.106534_b0115 article-title: Influenza and the live poultry trade publication-title: Science doi: 10.1126/science.1254664 – volume: 16 start-page: 161 year: 2016 ident: 10.1016/j.envint.2021.106534_b0260 article-title: Emergence of plasmid-mediated colistin resistance mechanism MCR-1 in animals and human beings in China: a microbiological and molecular biological study publication-title: Lancet Infect. Dis. doi: 10.1016/S1473-3099(15)00424-7 – volume: 64 start-page: e01326 year: 2019 ident: 10.1016/j.envint.2021.106534_b0470 article-title: Novel plasmid-mediated tet(X5) gene conferring resistance to tigecycline, eravacycline and omadacycline in clinical Acinetobacter baumannii publication-title: Antimicrob. Agents Chemother. doi: 10.1128/AAC.01326-19 – volume: 9 start-page: 3891 year: 2018 ident: 10.1016/j.envint.2021.106534_b0320 article-title: Maternal gut and breast milk microbiota affect infant gut antibiotic resistome and mobile genetic elements publication-title: Nat. Commun. doi: 10.1038/s41467-018-06393-w – volume: 16 start-page: 1102 year: 2016 ident: 10.1016/j.envint.2021.106534_b0460 article-title: China bans colistin as a feed additive for animals publication-title: Lancet Infect. Dis. doi: 10.1016/S1473-3099(16)30329-2 |
| SSID | ssj0002485 |
| Score | 2.5490928 |
| Snippet | •More diversified ARGs were identified the LPMs than the farms.•The live poultry trade may speed up the spread of antibiotic resistance.•LPM workers are... Poultry farms and LPMs are a reservoir of antimicrobial resistant bacteria and resistance genes from feces. The LPM is an important interface between humans,... Background: Poultry farms and LPMs are a reservoir of antimicrobial resistant bacteria and resistance genes from feces. The LPM is an important interface... |
| SourceID | doaj proquest pubmed crossref elsevier |
| SourceType | Open Website Aggregation Database Index Database Enrichment Source Publisher |
| StartPage | 106534 |
| SubjectTerms | Animals Anti-Bacterial Agents - pharmacology antibiotic resistance antibiotic resistance genes Antibiotic resistome antibiotics bacterial communities Chickens China Colistin resistance community structure digestive system Drug Resistance, Bacterial - genetics Drug Resistance, Microbial environment Farmers farms feces Genes, Bacterial Humans Live poultry market workers Metagenomics microbiome Occupational Exposure people Poultry poultry industry Public health Tigecycline resistance urban areas |
| SummonAdditionalLinks | – databaseName: Elsevier SD Freedom Collection dbid: .~1 link: http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV3Pb9MwFLamnUAIQWFQBshIXEOT-PcRpk0T0rjApN2MHdtTYEuqtjtw4W_fe3HS0QNM4tZaz65rP9vfS773mZD3xnMeKxkKHRgEKDqWhdGmKaqovKqTVrXD55BnX-TpOf98IS72yNGUC4O0ynHvz3v6sFuPJYtxNBfLtl18RW00XtUYtMCZZjDhF9XrwKc__L6jeaBkV9b3Lgu0ntLnBo4XJpN1yKisKyiSgvGd42lQ8d85pf6GQofT6OQJeTzCSPox9_Qp2YvdjDz8Q1xwRg6O73LYwHRcxOsZeZQf1dGcgfSMfD_rV5GGTNBIAEkpjHbr2x7aphCNI8KEmvQSt0XadhSvT_kJ4S_YBYrELqhI-0QBS9IraIYu8bLq1S96PaRUr5-T85Pjb0enxXjxQtEAPNwUKbBaBVE7F3wSrNScad-UjGsZdFJMhyTq6GXDTOWZTNw0wZU8uYjq94GzA7Lf9V18SWiqXdk4iMKSCxw_OCOTYSI0mgvw4jlh03jbZlQlx8sxruxEP_th8yxZnCWbZ2lOim2tZVbluMf-E07l1hY1tYeCfnVpR6eyjeTQf8-ScJ7LkLx2-BIZMA1gstqXc6ImR7A7LgpNtff8_LvJbyysXnwl47rY36wtAFAtUDFf_ctGIFVcldDOi-x02z_CmEJhYfPqv_t2SB7gt8xpfE32N6ub-AZw1sa_HRbSLe9-JmU priority: 102 providerName: Elsevier |
| Title | More diversified antibiotic resistance genes in chickens and workers of the live poultry markets |
| URI | https://dx.doi.org/10.1016/j.envint.2021.106534 https://www.ncbi.nlm.nih.gov/pubmed/33799229 https://www.proquest.com/docview/2508563247 https://www.proquest.com/docview/2551996704 https://doaj.org/article/c64e73b3f5ab46dfb8a45842383552b0 |
| Volume | 153 |
| hasFullText | 1 |
| inHoldings | 1 |
| isFullTextHit | |
| isPrint | |
| link | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwrV1Lb9QwELagXECoKguFLbAyEtdAEj9zLKjVAmpPVOrN-Im2lKTa3R648NuZiZOlPdC9cIuisePYY883ycw3hLxtHOexkqHQgYGDomNZNLrxRRWVU3XSqrb4HfLkVM7P-OdzcX6j1BfGhGV64Dxx773kUTHHkrCOy5CctvhrDywNWMra9d462LzRmRrOYCTqyqzeZcGruhyT5vrILkwhazGOsq7glhSM3zJKPXf_Ldv0L-zZ26DjPbI7gEd6mAf9hNyL7YQ8ukEpOCH7R38z10B02LqrCXmcP9DRnHf0lHw76ZaRhhyWkQCIUpjjhVt00DcFHxxxJbSk3_EwpIuWYtGUH-D0glygGM4FDWmXKCBIegnd0CssUb38RX_2idSrZ-Ts-Ojrx3kxlFsoPIDCdZECq1UQtbXBJcFKzZl2vmRcy6CTYjokUUcnPWsqx2TijQ-25MlG5LwPnO2TnbZr4wtCU21Lb8H3SjZwvLCNTA0TwWsuQHenhI3zbfzARY4lMS7NGHR2YfIqGVwlk1dpSopNq6vMxbFF_gMu5UYWmbT7G6BfZtAvs02_pkSNimAGUJLBBnS12PL4N6PeGNiz-CPGtrG7XhmAnVogT766S0ZggLgqoZ_nWek2L8KYQjrh5uB_vOBL8hAHnYMaX5Gd9fI6vgagtXYzcv_d72pGHhx--jI_nfU77A9jPCec |
| linkProvider | Directory of Open Access Journals |
| linkToHtml | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwnV3fb9MwED6N7gEQQlAYlJ9G4jVqEtuJ8zimTR1b-8Im7c3YcTwFRlK13QP_PXdxUugDTOItcs6OY5_P3yV3nwE-FlaIKslcpBxHB0VVcVSoooySKrd56lWeGvoOOV9ks0vx-Upe7cHRkAtDYZW97Q82vbPWfcm0H83psq6nX4gbTSQpOS24pxXqHuwTO5UYwf7h6dlssTXIxNoVKL7jiCoMGXRdmBflkzUUVJkmWJRJLnZ2qI7If2ej-hsQ7TakkyfwuEeS7DB09insVc0YHv7BLziGg-PfaWwo2q_j9Rgeha91LCQhPYOv83ZVMRdiNDyiUoYDXtu6xbYZOuQEMrEmuybLyOqG0Qkq39EDRjnHKLYLK7LWM4ST7AabYUs6r3r1k_3osqrXz-Hy5PjiaBb1Zy9EJSLETeQdT3MnU2Oc9ZLHSnBly5gLlTnlc66cl2lls5IXieWZF0XpTCy8qYgA3wl-AKOmbaqXwHxq4tKgI-aNE3RhiswXXLpSCYmKPAE-jLcue2JyOh_jRg8RaN90mCVNs6TDLE0g2tZaBmKOO-Q_0VRuZYlWuytoV9e61ytdZgL7b7mXxorMeasM_UdGWIOwLLXxBPJBEfSOlmJT9R2P_zDojcYFTH9lTFO1t2uNGFRJIs3P_yUjKVo8j7GdF0Hpti_CeU7cwsWr_-7be7g_u5if6_PTxdlreEB3QojjGxhtVrfVW4RdG_uuX1a_ADIVKqQ |
| openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=More+diversified+antibiotic+resistance+genes+in+chickens+and+workers+of+the+live+poultry+markets&rft.jtitle=Environment+international&rft.au=Wang%2C+Yanan&rft.au=Lyu%2C+Na&rft.au=Liu%2C+Fei&rft.au=Liu%2C+William+J.&rft.date=2021-08-01&rft.issn=0160-4120&rft.volume=153&rft.spage=106534&rft_id=info:doi/10.1016%2Fj.envint.2021.106534&rft.externalDBID=n%2Fa&rft.externalDocID=10_1016_j_envint_2021_106534 |
| thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=0160-4120&client=summon |
| thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=0160-4120&client=summon |
| thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=0160-4120&client=summon |