Genome-wide analysis of NAC transcription factor family in maize under drought stress and rewatering
The plant-specific NAC transcription factor (TFs) plays crucial role in plant growth as well as in stress resistance. In the present study, 87 Zea mays NAC TFs were obtained from the transcriptome analysis using drought-resistant maize inbred line Y882 as experimental material under PEG stress and r...
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| Published in | Physiology and molecular biology of plants Vol. 26; no. 4; pp. 705 - 717 |
|---|---|
| Main Authors | , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
New Delhi
Springer India
01.04.2020
Springer Nature B.V |
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| Online Access | Get full text |
| ISSN | 0971-5894 0974-0430 |
| DOI | 10.1007/s12298-020-00770-w |
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| Abstract | The plant-specific NAC transcription factor (TFs) plays crucial role in plant growth as well as in stress resistance. In the present study, 87
Zea mays
NAC TFs were obtained from the transcriptome analysis using drought-resistant maize inbred line Y882 as experimental material under PEG stress and rewatering treatment. Comprehensive analyses were conducted including genes structure, chromosomal localization, phylogenetic tree and motif prediction,
cis
-elements and expression patterns. The results showed that the 87
ZmNAC
genes distributed on 10 chromosomes and were categorized into 15 groups based on their conserved gene structure and motifs. Phylogenetic tree analysis was also constructed referencing to the counterparts of
Arabidopsis
and rice, and the stress-related
cis
-elements in the promoter region were also analyzed. 87
ZmNAC
genes exhibited different expression levels at 3 treatment points, indicating different response to drought stress. This genome-wide analysis of 87
ZmNAC
genes will provide basis for further gene function detection. |
|---|---|
| AbstractList | The plant-specific NAC transcription factor (TFs) plays crucial role in plant growth as well as in stress resistance. In the present study, 87 Zea mays NAC TFs were obtained from the transcriptome analysis using drought-resistant maize inbred line Y882 as experimental material under PEG stress and rewatering treatment. Comprehensive analyses were conducted including genes structure, chromosomal localization, phylogenetic tree and motif prediction, cis-elements and expression patterns. The results showed that the 87 ZmNAC genes distributed on 10 chromosomes and were categorized into 15 groups based on their conserved gene structure and motifs. Phylogenetic tree analysis was also constructed referencing to the counterparts of Arabidopsis and rice, and the stress-related cis-elements in the promoter region were also analyzed. 87 ZmNAC genes exhibited different expression levels at 3 treatment points, indicating different response to drought stress. This genome-wide analysis of 87 ZmNAC genes will provide basis for further gene function detection.The plant-specific NAC transcription factor (TFs) plays crucial role in plant growth as well as in stress resistance. In the present study, 87 Zea mays NAC TFs were obtained from the transcriptome analysis using drought-resistant maize inbred line Y882 as experimental material under PEG stress and rewatering treatment. Comprehensive analyses were conducted including genes structure, chromosomal localization, phylogenetic tree and motif prediction, cis-elements and expression patterns. The results showed that the 87 ZmNAC genes distributed on 10 chromosomes and were categorized into 15 groups based on their conserved gene structure and motifs. Phylogenetic tree analysis was also constructed referencing to the counterparts of Arabidopsis and rice, and the stress-related cis-elements in the promoter region were also analyzed. 87 ZmNAC genes exhibited different expression levels at 3 treatment points, indicating different response to drought stress. This genome-wide analysis of 87 ZmNAC genes will provide basis for further gene function detection. The plant-specific NAC transcription factor (TFs) plays crucial role in plant growth as well as in stress resistance. In the present study, 87 Zea mays NAC TFs were obtained from the transcriptome analysis using drought-resistant maize inbred line Y882 as experimental material under PEG stress and rewatering treatment. Comprehensive analyses were conducted including genes structure, chromosomal localization, phylogenetic tree and motif prediction, cis-elements and expression patterns. The results showed that the 87 ZmNAC genes distributed on 10 chromosomes and were categorized into 15 groups based on their conserved gene structure and motifs. Phylogenetic tree analysis was also constructed referencing to the counterparts of Arabidopsis and rice, and the stress-related cis-elements in the promoter region were also analyzed. 87 ZmNAC genes exhibited different expression levels at 3 treatment points, indicating different response to drought stress. This genome-wide analysis of 87 ZmNAC genes will provide basis for further gene function detection. The plant-specific NAC transcription factor (TFs) plays crucial role in plant growth as well as in stress resistance. In the present study, 87 NAC TFs were obtained from the transcriptome analysis using drought-resistant maize inbred line Y882 as experimental material under PEG stress and rewatering treatment. Comprehensive analyses were conducted including genes structure, chromosomal localization, phylogenetic tree and motif prediction, -elements and expression patterns. The results showed that the 87 genes distributed on 10 chromosomes and were categorized into 15 groups based on their conserved gene structure and motifs. Phylogenetic tree analysis was also constructed referencing to the counterparts of and rice, and the stress-related -elements in the promoter region were also analyzed. 87 genes exhibited different expression levels at 3 treatment points, indicating different response to drought stress. This genome-wide analysis of 87 genes will provide basis for further gene function detection. The plant-specific NAC transcription factor (TFs) plays crucial role in plant growth as well as in stress resistance. In the present study, 87 Zea mays NAC TFs were obtained from the transcriptome analysis using drought-resistant maize inbred line Y882 as experimental material under PEG stress and rewatering treatment. Comprehensive analyses were conducted including genes structure, chromosomal localization, phylogenetic tree and motif prediction, cis -elements and expression patterns. The results showed that the 87 ZmNAC genes distributed on 10 chromosomes and were categorized into 15 groups based on their conserved gene structure and motifs. Phylogenetic tree analysis was also constructed referencing to the counterparts of Arabidopsis and rice, and the stress-related cis -elements in the promoter region were also analyzed. 87 ZmNAC genes exhibited different expression levels at 3 treatment points, indicating different response to drought stress. This genome-wide analysis of 87 ZmNAC genes will provide basis for further gene function detection. |
| Author | Wang, Guorui Liu, Zhixue Yuan, Zhen Zhang, Pengyu Wang, Tongchao Wei, Li |
| Author_xml | – sequence: 1 givenname: Guorui surname: Wang fullname: Wang, Guorui organization: Agricultural College of Henan Agricultural University – sequence: 2 givenname: Zhen surname: Yuan fullname: Yuan, Zhen organization: Agricultural College of Henan Agricultural University – sequence: 3 givenname: Pengyu surname: Zhang fullname: Zhang, Pengyu organization: Agricultural College of Henan Agricultural University – sequence: 4 givenname: Zhixue surname: Liu fullname: Liu, Zhixue organization: Agricultural College of Henan Agricultural University – sequence: 5 givenname: Tongchao surname: Wang fullname: Wang, Tongchao organization: Agricultural College of Henan Agricultural University – sequence: 6 givenname: Li surname: Wei fullname: Wei, Li email: weili-wtc@126.com organization: Agricultural College of Henan Agricultural University |
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| Keywords | NAC transcription factors Drought Expression pattern Zea mays |
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| Snippet | The plant-specific NAC transcription factor (TFs) plays crucial role in plant growth as well as in stress resistance. In the present study, 87
Zea mays
NAC TFs... The plant-specific NAC transcription factor (TFs) plays crucial role in plant growth as well as in stress resistance. In the present study, 87 NAC TFs were... The plant-specific NAC transcription factor (TFs) plays crucial role in plant growth as well as in stress resistance. In the present study, 87 Zea mays NAC TFs... |
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| SubjectTerms | Arabidopsis Biological and Medical Physics Biomedical and Life Sciences Biophysics Cell Biology chromosome mapping Chromosomes Corn Drought resistance drought tolerance Gene expression Genes genome-wide association study Genomes inbred lines Inbreeding Life Sciences Localization Phylogenetics Phylogeny Plant growth Plant Physiology Plant Sciences prediction promoter regions Research Article rice stress tolerance Transcription factors transcriptomics water stress Zea mays |
| Title | Genome-wide analysis of NAC transcription factor family in maize under drought stress and rewatering |
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