FunRich proteomics software analysis, let the fun begin
Protein MS analysis is the preferred method for unbiased protein identification. It is normally applied to a large number of both small‐scale and high‐throughput studies. However, user‐friendly computational tools for protein analysis are still needed. In this issue, Mathivanan and colleagues (Prote...
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| Published in | Proteomics (Weinheim) Vol. 15; no. 15; pp. 2555 - 2556 |
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| Main Authors | , |
| Format | Journal Article |
| Language | English |
| Published |
Germany
Blackwell Publishing Ltd
01.08.2015
Wiley Subscription Services, Inc |
| Subjects | |
| Online Access | Get full text |
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| Abstract | Protein MS analysis is the preferred method for unbiased protein identification. It is normally applied to a large number of both small‐scale and high‐throughput studies. However, user‐friendly computational tools for protein analysis are still needed. In this issue, Mathivanan and colleagues (Proteomics 2015, 15, 2597–2601) report the development of FunRich software, an open‐access software that facilitates the analysis of proteomics data, providing tools for functional enrichment and interaction network analysis of genes and proteins. FunRich is a reinterpretation of proteomic software, a standalone tool combining ease of use with customizable databases, free access, and graphical representations. |
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| AbstractList | Protein MS analysis is the preferred method for unbiased protein identification. It is normally applied to a large number of both small-scale and high-throughput studies. However, user-friendly computational tools for protein analysis are still needed. In this issue, Mathivanan and colleagues (Proteomics 2015, 15, 2597-2601) report the development of FunRich software, an open-access software that facilitates the analysis of proteomics data, providing tools for functional enrichment and interaction network analysis of genes and proteins. FunRich is a reinterpretation of proteomic software, a standalone tool combining ease of use with customizable databases, free access, and graphical representations. Protein MS analysis is the preferred method for unbiased protein identification. It is normally applied to a large number of both small‐scale and high‐throughput studies. However, user‐friendly computational tools for protein analysis are still needed. In this issue, Mathivanan and colleagues ( Proteomics 2015, 15 , 2597–2601) report the development of FunRich software, an open‐access software that facilitates the analysis of proteomics data, providing tools for functional enrichment and interaction network analysis of genes and proteins. FunRich is a reinterpretation of proteomic software, a standalone tool combining ease of use with customizable databases, free access, and graphical representations. |
| Author | Peinado, Héctor Benito-Martin, Alberto |
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| Cites_doi | 10.1002/jms.3414 10.1002/pmic.201400515 10.1002/pmic.200900351 10.1038/nature09792 10.1016/j.ceb.2015.04.013 10.1016/S0021-9258(18)48095-7 10.1371/journal.pbio.1001450 10.1038/nri855 |
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| References | Pathan, M., Keerthikumar, S., Ang, C. S., Gangoda, L. et al., FunRich: an open access standalone functional enrichment and interaction network analysis tool. Proteomics 2015, 15, 2597-2601. Thery, C., Zitvogel, L., Amigorena, S., Exosomes: composition, biogenesis and function. Nat. Rev. Immunol. 2002, 2, 569-579. Lo Cicero, A., Stahl, P. D., Raposo, G., Extracellular vesicles shuffling intercellular messages: for good or for bad. Curr. Opin. Cell Biol. 2015, 35, 69-77. Haga, S. W., Wu, H. F., Overview of software options for processing, analysis and interpretation of mass spectrometric proteomic data. J. Mass Spectrom. 2014, 49, 959-969. Mathivanan, S., Simpson R. J., ExoCarta: a compendium of exosomal proteins and RNA. Proteomics 2009, 9, 4997-5000. Lander, E. S., Initial impact of the sequencing of the human genome. Nature 2011, 470, 187-197. Kalra, H., Simpson, R. J., Ji, H., Aikawa, E. et al., Vesiclepedia: a compendium for extracellular vesicles with continuous community annotation. PLoS Biol. 2012, 10, e1001450. Johnstone, R. M., Adam, M., Hammond, J. R., Orr, L., Turbide, C., Vesicle formation during reticulocyte maturation. Association of plasma membrane activities with released vesicles (exosomes). J. Biol. Chem. 1987, 262, 9412-9420. 2014; 49 1987; 262 2015; 35 2002; 2 2015; 15 2009; 9 2011; 470 2012; 10 25921073 - Proteomics. 2015 Aug;15(15):2597-601 e_1_2_2_4_1 e_1_2_2_5_1 e_1_2_2_6_1 e_1_2_2_7_1 e_1_2_2_2_1 e_1_2_2_3_1 e_1_2_2_9_1 e_1_2_2_8_1 |
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| Title | FunRich proteomics software analysis, let the fun begin |
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