Integrating omics databases for enhanced crop breeding

Crop plant breeding involves selecting and developing new plant varieties with desirable traits such as increased yield, improved disease resistance, and enhanced nutritional value. With the development of high-throughput technologies, such as genomics, transcriptomics, and metabolomics, crop breedi...

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Published inJournal of integrative bioinformatics Vol. 20; no. 4; pp. 235 - 61
Main Authors Chao, Haoyu, Zhang, Shilong, Hu, Yueming, Ni, Qingyang, Xin, Saige, Zhao, Liang, Ivanisenko, Vladimir A., Orlov, Yuriy L., Chen, Ming
Format Journal Article
LanguageEnglish
Published Germany De Gruyter 01.12.2023
Subjects
crop plant breeding
data integration
omics
plant biology
Review
databases
crop plant breeding
plant biology
omics
data integration
Online AccessGet full text
ISSN1613-4516
1613-4516
DOI10.1515/jib-2023-0012

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Abstract Crop plant breeding involves selecting and developing new plant varieties with desirable traits such as increased yield, improved disease resistance, and enhanced nutritional value. With the development of high-throughput technologies, such as genomics, transcriptomics, and metabolomics, crop breeding has entered a new era. However, to effectively use these technologies, integration of multi-omics data from different databases is required. Integration of omics data provides a comprehensive understanding of the biological processes underlying plant traits and their interactions. This review highlights the importance of integrating omics databases in crop plant breeding, discusses available omics data and databases, describes integration challenges, and highlights recent developments and potential benefits. Taken together, the integration of omics databases is a critical step towards enhancing crop plant breeding and improving global food security.
AbstractList Crop plant breeding involves selecting and developing new plant varieties with desirable traits such as increased yield, improved disease resistance, and enhanced nutritional value. With the development of high-throughput technologies, such as genomics, transcriptomics, and metabolomics, crop breeding has entered a new era. However, to effectively use these technologies, integration of multi-omics data from different databases is required. Integration of omics data provides a comprehensive understanding of the biological processes underlying plant traits and their interactions. This review highlights the importance of integrating omics databases in crop plant breeding, discusses available omics data and databases, describes integration challenges, and highlights recent developments and potential benefits. Taken together, the integration of omics databases is a critical step towards enhancing crop plant breeding and improving global food security.
Crop plant breeding involves selecting and developing new plant varieties with desirable traits such as increased yield, improved disease resistance, and enhanced nutritional value. With the development of high-throughput technologies, such as genomics, transcriptomics, and metabolomics, crop breeding has entered a new era. However, to effectively use these technologies, integration of multi-omics data from different databases is required. Integration of omics data provides a comprehensive understanding of the biological processes underlying plant traits and their interactions. This review highlights the importance of integrating omics databases in crop plant breeding, discusses available omics data and databases, describes integration challenges, and highlights recent developments and potential benefits. Taken together, the integration of omics databases is a critical step towards enhancing crop plant breeding and improving global food security.Crop plant breeding involves selecting and developing new plant varieties with desirable traits such as increased yield, improved disease resistance, and enhanced nutritional value. With the development of high-throughput technologies, such as genomics, transcriptomics, and metabolomics, crop breeding has entered a new era. However, to effectively use these technologies, integration of multi-omics data from different databases is required. Integration of omics data provides a comprehensive understanding of the biological processes underlying plant traits and their interactions. This review highlights the importance of integrating omics databases in crop plant breeding, discusses available omics data and databases, describes integration challenges, and highlights recent developments and potential benefits. Taken together, the integration of omics databases is a critical step towards enhancing crop plant breeding and improving global food security.
Author Ni, Qingyang
Chen, Ming
Hu, Yueming
Zhang, Shilong
Xin, Saige
Zhao, Liang
Orlov, Yuriy L.
Chao, Haoyu
Ivanisenko, Vladimir A.
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Issue 4
Keywords databases
crop plant breeding
plant biology
omics
data integration
Language English
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2023 the author(s), published by De Gruyter, Berlin/Boston.
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Haoyu Chao, Shilong Zhang, Yueming Hu, and Qingyang Ni with equal contribution jointly sharing the first author position.
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Snippet Crop plant breeding involves selecting and developing new plant varieties with desirable traits such as increased yield, improved disease resistance, and...
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SubjectTerms crop plant breeding
data integration
omics
plant biology
Review
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Title Integrating omics databases for enhanced crop breeding
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