Repression of Nitrogen Starvation Responses by Members of the Arabidopsis GARP-Type Transcription Factor NIGT1/HRS1 Subfamily
Nitrogen (N) is often a limiting nutrient whose availability determines plant growth and productivity. Because its availability is often low and/or not uniform over time and space in nature, plants respond to variations in N availability by altering uptake and recycling mechanisms, but the molecular...
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| Published in | The Plant cell Vol. 30; no. 4; pp. 925 - 945 |
|---|---|
| Main Authors | , , , , , , , , , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
United States
American Society of Plant Biologists
01.04.2018
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| Subjects | |
| Online Access | Get full text |
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| Abstract | Nitrogen (N) is often a limiting nutrient whose availability determines plant growth and productivity. Because its availability is often low and/or not uniform over time and space in nature, plants respond to variations in N availability by altering uptake and recycling mechanisms, but the molecular mechanisms underlying how these responses are regulated are poorly understood. Here, we show that a group of GARP G2-like transcription factors, Arabidopsis thaliana NITRATE-INDUCIBLE, GARP-TYPE TRANSCRIPTIONAL REPRESSOR1/HYPERSENSITIVE TO LOW Pi-ELICITED PRIMARY ROOT SHORTENING1 proteins (NIGT1/HRS1s), are factors that bind to the promoter of the N starvation marker NRT2.4 and repress an array of N starvation-responsive genes under conditions of high N availability. Transient assays and expression analysis demonstrated that NIGT1/HRS1s are transcriptional repressors whose expression is regulated by N availability. We identified target genes of the NIGT1/HRS1s by genome-wide transcriptome analyses and found that they are significantly enriched in N starvation response-related genes, including N acquisition, recycling, remobilization, and signaling genes. Loss of NIGT1/HRS1s resulted in deregulation of N acquisition and accumulation. We propose that NIGT1/HRS1s are major regulators of N starvation responses that play an important role in optimizing N acquisition and utilization under fluctuating N conditions. |
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| AbstractList | Nitrogen (N) is often a limiting nutrient whose availability determines plant growth and productivity. Because its availability is often low and/or not uniform over time and space in nature, plants respond to variations in N availability by altering uptake and recycling mechanisms, but the molecular mechanisms underlying how these responses are regulated are poorly understood. Here, we show that a group of GARP G2-like transcription factors,
NITRATE-INDUCIBLE, GARP-TYPE TRANSCRIPTIONAL REPRESSOR1/HYPERSENSITIVE TO LOW Pi-ELICITED PRIMARY ROOT SHORTENING1 proteins (NIGT1/HRS1s), are factors that bind to the promoter of the N starvation marker
and repress an array of N starvation-responsive genes under conditions of high N availability. Transient assays and expression analysis demonstrated that NIGT1/HRS1s are transcriptional repressors whose expression is regulated by N availability. We identified target genes of the NIGT1/HRS1s by genome-wide transcriptome analyses and found that they are significantly enriched in N starvation response-related genes, including N acquisition, recycling, remobilization, and signaling genes. Loss of
resulted in deregulation of N acquisition and accumulation. We propose that NIGT1/HRS1s are major regulators of N starvation responses that play an important role in optimizing N acquisition and utilization under fluctuating N conditions. NIGT1/HRS1s are GARP-type transcription factors that repress nitrogen starvation responses in order to optimize nitrogen acquisition and utilization under fluctuating nitrogen availability and demand.Nitrogen (N) is often a limiting nutrient whose availability determines plant growth and productivity. Because its availability is often low and/or not uniform over time and space in nature, plants respond to variations in N availability by altering uptake and recycling mechanisms, but the molecular mechanisms underlying how these responses are regulated are poorly understood. Here, we show that a group of GARP G2-like transcription factors, Arabidopsis thaliana NITRATE-INDUCIBLE, GARP-TYPE TRANSCRIPTIONAL REPRESSOR1/HYPERSENSITIVE TO LOW Pi-ELICITED PRIMARY ROOT SHORTENING1 proteins (NIGT1/HRS1s), are factors that bind to the promoter of the N starvation marker NRT2.4 and repress an array of N starvation-responsive genes under conditions of high N availability. Transient assays and expression analysis demonstrated that NIGT1/HRS1s are transcriptional repressors whose expression is regulated by N availability. We identified target genes of the NIGT1/HRS1s by genome-wide transcriptome analyses and found that they are significantly enriched in N starvation response-related genes, including N acquisition, recycling, remobilization, and signaling genes. Loss of NIGT1/HRS1s resulted in deregulation of N acquisition and accumulation. We propose that NIGT1/HRS1s are major regulators of N starvation responses that play an important role in optimizing N acquisition and utilization under fluctuating N conditions. Nitrogen (N) is often a limiting nutrient whose availability determines plant growth and productivity. Because its availability is often low and/or not uniform over time and space in nature, plants respond to variations in N availability by altering uptake and recycling mechanisms, but the molecular mechanisms underlying how these responses are regulated are poorly understood. Here, we show that a group of GARP G2-like transcription factors, Arabidopsis thaliana NITRATE-INDUCIBLE, GARP-TYPE TRANSCRIPTIONAL REPRESSOR1/HYPERSENSITIVE TO LOW Pi-ELICITED PRIMARY ROOT SHORTENING1 proteins (NIGT1/HRS1s), are factors that bind to the promoter of the N starvation marker NRT2.4 and repress an array of N starvation-responsive genes under conditions of high N availability. Transient assays and expression analysis demonstrated that NIGT1/HRS1s are transcriptional repressors whose expression is regulated by N availability. We identified target genes of the NIGT1/HRS1s by genome-wide transcriptome analyses and found that they are significantly enriched in N starvation response-related genes, including N acquisition, recycling, remobilization, and signaling genes. Loss of NIGT1/HRS1s resulted in deregulation of N acquisition and accumulation. We propose that NIGT1/HRS1s are major regulators of N starvation responses that play an important role in optimizing N acquisition and utilization under fluctuating N conditions. Nitrogen (N) is often a limiting nutrient whose availability determines plant growth and productivity. Because its availability is often low and/or not uniform over time and space in nature, plants respond to variations in N availability by altering uptake and recycling mechanisms, but the molecular mechanisms underlying how these responses are regulated are poorly understood. Here, we show that a group of GARP G2-like transcription factors, Arabidopsis thaliana NITRATE-INDUCIBLE, GARP-TYPE TRANSCRIPTIONAL REPRESSOR1/HYPERSENSITIVE TO LOW Pi-ELICITED PRIMARY ROOT SHORTENING1 proteins (NIGT1/HRS1s), are factors that bind to the promoter of the N starvation marker NRT2.4 and repress an array of N starvation-responsive genes under conditions of high N availability. Transient assays and expression analysis demonstrated that NIGT1/HRS1s are transcriptional repressors whose expression is regulated by N availability. We identified target genes of the NIGT1/HRS1s by genome-wide transcriptome analyses and found that they are significantly enriched in N starvation response-related genes, including N acquisition, recycling, remobilization, and signaling genes. Loss of NIGT1/HRS1s resulted in deregulation of N acquisition and accumulation. We propose that NIGT1/HRS1s are major regulators of N starvation responses that play an important role in optimizing N acquisition and utilization under fluctuating N conditions.Nitrogen (N) is often a limiting nutrient whose availability determines plant growth and productivity. Because its availability is often low and/or not uniform over time and space in nature, plants respond to variations in N availability by altering uptake and recycling mechanisms, but the molecular mechanisms underlying how these responses are regulated are poorly understood. Here, we show that a group of GARP G2-like transcription factors, Arabidopsis thaliana NITRATE-INDUCIBLE, GARP-TYPE TRANSCRIPTIONAL REPRESSOR1/HYPERSENSITIVE TO LOW Pi-ELICITED PRIMARY ROOT SHORTENING1 proteins (NIGT1/HRS1s), are factors that bind to the promoter of the N starvation marker NRT2.4 and repress an array of N starvation-responsive genes under conditions of high N availability. Transient assays and expression analysis demonstrated that NIGT1/HRS1s are transcriptional repressors whose expression is regulated by N availability. We identified target genes of the NIGT1/HRS1s by genome-wide transcriptome analyses and found that they are significantly enriched in N starvation response-related genes, including N acquisition, recycling, remobilization, and signaling genes. Loss of NIGT1/HRS1s resulted in deregulation of N acquisition and accumulation. We propose that NIGT1/HRS1s are major regulators of N starvation responses that play an important role in optimizing N acquisition and utilization under fluctuating N conditions. NIGT1/HRS1s are GARP-type transcription factors that repress nitrogen starvation responses in order to optimize nitrogen acquisition and utilization under fluctuating nitrogen availability and demand. Nitrogen (N) is often a limiting nutrient whose availability determines plant growth and productivity. Because its availability is often low and/or not uniform over time and space in nature, plants respond to variations in N availability by altering uptake and recycling mechanisms, but the molecular mechanisms underlying how these responses are regulated are poorly understood. Here, we show that a group of GARP G2-like transcription factors, Arabidopsis thaliana NITRATE-INDUCIBLE, GARP-TYPE TRANSCRIPTIONAL REPRESSOR1/HYPERSENSITIVE TO LOW Pi-ELICITED PRIMARY ROOT SHORTENING1 proteins (NIGT1/HRS1s), are factors that bind to the promoter of the N starvation marker NRT2.4 and repress an array of N starvation-responsive genes under conditions of high N availability. Transient assays and expression analysis demonstrated that NIGT1/HRS1s are transcriptional repressors whose expression is regulated by N availability. We identified target genes of the NIGT1/HRS1s by genome-wide transcriptome analyses and found that they are significantly enriched in N starvation response-related genes, including N acquisition, recycling, remobilization, and signaling genes. Loss of NIGT1/HRS1s resulted in deregulation of N acquisition and accumulation. We propose that NIGT1/HRS1s are major regulators of N starvation responses that play an important role in optimizing N acquisition and utilization under fluctuating N conditions. |
| Author | Takiguchi, Yuko Ueda, Nanae Mitsuda, Nobutaka Yanagisawa, Shuichi Yoshizumi, Takeshi Ohme-Takagi, Masaru Yano, Kentaro Sakakibara, Hitoshi Kudo, Toru Matsui, Minami Kiba, Takatoshi Inaba, Jun Konishi, Mineko Kondou, Youichi |
| Author_xml | – sequence: 1 givenname: Takatoshi surname: Kiba fullname: Kiba, Takatoshi organization: RIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama 230-0045, Japan – sequence: 2 givenname: Jun surname: Inaba fullname: Inaba, Jun organization: RIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama 230-0045, Japan – sequence: 3 givenname: Toru surname: Kudo fullname: Kudo, Toru organization: School of Agriculture, Meiji University, Tama-ku, Kawasaki, Kanagawa 214-8571, Japan – sequence: 4 givenname: Nanae surname: Ueda fullname: Ueda, Nanae organization: RIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama 230-0045, Japan – sequence: 5 givenname: Mineko surname: Konishi fullname: Konishi, Mineko organization: Laboratory of Plant Biotechnology, Biotechnology Research Center, The University of Tokyo, Bunkyo-ku, Tokyo 113-8657, Japan – sequence: 6 givenname: Nobutaka surname: Mitsuda fullname: Mitsuda, Nobutaka organization: Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology, Tsukuba, Ibaraki 305-0046, Japan – sequence: 7 givenname: Yuko surname: Takiguchi fullname: Takiguchi, Yuko organization: Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology, Tsukuba, Ibaraki 305-0046, Japan – sequence: 8 givenname: Youichi surname: Kondou fullname: Kondou, Youichi organization: Department of Biosciences, Kanto Gakuin University College of Science and Engineering, Kanazawa, Yokohama 236-8501, Japan – sequence: 9 givenname: Takeshi surname: Yoshizumi fullname: Yoshizumi, Takeshi organization: RIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama 230-0045, Japan – sequence: 10 givenname: Masaru surname: Ohme-Takagi fullname: Ohme-Takagi, Masaru organization: Graduate School of Science and Engineering, Saitama University, Sakura, Saitama 338-8570, Japan – sequence: 11 givenname: Minami surname: Matsui fullname: Matsui, Minami organization: RIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama 230-0045, Japan – sequence: 12 givenname: Kentaro surname: Yano fullname: Yano, Kentaro organization: School of Agriculture, Meiji University, Tama-ku, Kawasaki, Kanagawa 214-8571, Japan – sequence: 13 givenname: Shuichi surname: Yanagisawa fullname: Yanagisawa, Shuichi organization: Laboratory of Plant Biotechnology, Biotechnology Research Center, The University of Tokyo, Bunkyo-ku, Tokyo 113-8657, Japan – sequence: 14 givenname: Hitoshi surname: Sakakibara fullname: Sakakibara, Hitoshi organization: RIKEN Center for Sustainable Resource Science, Tsurumi, Yokohama 230-0045, Japan |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/29622567$$D View this record in MEDLINE/PubMed |
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| Copyright | 2018 American Society of Plant Biologists 2018 American Society of Plant Biologists. All rights reserved. Copyright American Society of Plant Biologists Apr 2018 2018 American Society of Plant Biologists. All rights reserved. 2018 |
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| Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 14 content type line 23 The author responsible for distribution of materials integral to the findings presented in this article in accordance with the policy described in the Instructions for Authors (www.plantcell.org) is: Takatoshi Kiba (takatoshi.kiba@riken.jp). www.plantcell.org/cgi/doi/10.1105/tpc.17.00810 |
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| PublicationTitle | The Plant cell |
| PublicationTitleAlternate | Plant Cell |
| PublicationYear | 2018 |
| Publisher | American Society of Plant Biologists |
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| Snippet | Nitrogen (N) is often a limiting nutrient whose availability determines plant growth and productivity. Because its availability is often low and/or not uniform... NIGT1/HRS1s are GARP-type transcription factors that repress nitrogen starvation responses in order to optimize nitrogen acquisition and utilization under... |
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| SubjectTerms | Availability Deregulation Gene expression Genes Genomes Molecular chains Molecular modelling Nitrogen Nutrient availability Optimization Plant growth Proteins Recycling Regulators Repressors Target recognition Transcription factors Variation |
| Title | Repression of Nitrogen Starvation Responses by Members of the Arabidopsis GARP-Type Transcription Factor NIGT1/HRS1 Subfamily |
| URI | https://www.jstor.org/stable/90021692 https://www.ncbi.nlm.nih.gov/pubmed/29622567 https://www.proquest.com/docview/2041830340 https://www.proquest.com/docview/2022996305 https://pubmed.ncbi.nlm.nih.gov/PMC5969275 |
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