Homology-Based Interactions between Small RNAs and Their Targets Control Dominance Hierarchy of Male Determinant Alleles of Self-Incompatibility in Arabidopsis lyrata
Self-incompatibility (SI) is conserved among members of the Brassicaceae plant family. This trait is controlled epigenetically by the dominance hierarchy of the male determinant alleles. We previously demonstrated that a single small RNA (sRNA) gene is sufficient to control the linear dominance hier...
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| Published in | International journal of molecular sciences Vol. 22; no. 13; p. 6990 |
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| Main Authors | , , , , |
| Format | Journal Article |
| Language | English |
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| Abstract | Self-incompatibility (SI) is conserved among members of the Brassicaceae plant family. This trait is controlled epigenetically by the dominance hierarchy of the male determinant alleles. We previously demonstrated that a single small RNA (sRNA) gene is sufficient to control the linear dominance hierarchy in Brassica rapa and proposed a model in which a homology-based interaction between sRNAs and target sites controls the complicated dominance hierarchy of male SI determinants. In Arabidopsis halleri, male dominance hierarchy is reported to have arisen from multiple networks of sRNA target gains and losses. Despite these findings, it remains unknown whether the molecular mechanism underlying the dominance hierarchy is conserved among Brassicaceae. Here, we identified sRNAs and their target sites that can explain the linear dominance hierarchy of Arabidopsis lyrata, a species closely related to A. halleri. We tested the model that we established in Brassica to explain the linear dominance hierarchy in A. lyrata. Our results suggest that the dominance hierarchy of A. lyrata is also controlled by a homology-based interaction between sRNAs and their targets. |
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| AbstractList | Self-incompatibility (SI) is conserved among members of the Brassicaceae plant family. This trait is controlled epigenetically by the dominance hierarchy of the male determinant alleles. We previously demonstrated that a single small RNA (sRNA) gene is sufficient to control the linear dominance hierarchy in Brassica rapa and proposed a model in which a homology-based interaction between sRNAs and target sites controls the complicated dominance hierarchy of male SI determinants. In Arabidopsis halleri, male dominance hierarchy is reported to have arisen from multiple networks of sRNA target gains and losses. Despite these findings, it remains unknown whether the molecular mechanism underlying the dominance hierarchy is conserved among Brassicaceae. Here, we identified sRNAs and their target sites that can explain the linear dominance hierarchy of Arabidopsis lyrata, a species closely related to A. halleri. We tested the model that we established in Brassica to explain the linear dominance hierarchy in A. lyrata. Our results suggest that the dominance hierarchy of A. lyrata is also controlled by a homology-based interaction between sRNAs and their targets. Self-incompatibility (SI) is conserved among members of the Brassicaceae plant family. This trait is controlled epigenetically by the dominance hierarchy of the male determinant alleles. We previously demonstrated that a single small RNA (sRNA) gene is sufficient to control the linear dominance hierarchy in Brassica rapa and proposed a model in which a homology-based interaction between sRNAs and target sites controls the complicated dominance hierarchy of male SI determinants. In Arabidopsis halleri , male dominance hierarchy is reported to have arisen from multiple networks of sRNA target gains and losses. Despite these findings, it remains unknown whether the molecular mechanism underlying the dominance hierarchy is conserved among Brassicaceae. Here, we identified sRNAs and their target sites that can explain the linear dominance hierarchy of Arabidopsis lyrata , a species closely related to A. halleri . We tested the model that we established in Brassica to explain the linear dominance hierarchy in A. lyrata . Our results suggest that the dominance hierarchy of A. lyrata is also controlled by a homology-based interaction between sRNAs and their targets. |
| Author | Yasuda, Shinsuke Takayama, Seiji Ito, Toshiro Wada, Yuko Kobayashi, Risa |
| AuthorAffiliation | 1 Division of Biological Sciences, Nara Institute of Science and Technology, Nara 630-0192, Japan; shinsuke-yasuda@takii.co.jp (S.Y.); kobayashi.risa.ki7@bs.naist.jp (R.K.); itot@bs.naist.jp (T.I.) 2 Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo 113-8657, Japan |
| AuthorAffiliation_xml | – name: 2 Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo 113-8657, Japan – name: 1 Division of Biological Sciences, Nara Institute of Science and Technology, Nara 630-0192, Japan; shinsuke-yasuda@takii.co.jp (S.Y.); kobayashi.risa.ki7@bs.naist.jp (R.K.); itot@bs.naist.jp (T.I.) |
| Author_xml | – sequence: 1 givenname: Shinsuke surname: Yasuda fullname: Yasuda, Shinsuke – sequence: 2 givenname: Risa surname: Kobayashi fullname: Kobayashi, Risa – sequence: 3 givenname: Toshiro surname: Ito fullname: Ito, Toshiro – sequence: 4 givenname: Yuko surname: Wada fullname: Wada, Yuko – sequence: 5 givenname: Seiji surname: Takayama fullname: Takayama, Seiji |
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| CitedBy_id | crossref_primary_10_1093_g3journal_jkae021 crossref_primary_10_1016_j_xplc_2023_100719 crossref_primary_10_1093_plphys_kiad301 crossref_primary_10_2183_pjab_100_014 crossref_primary_10_1038_s41467_023_43275_2 |
| Cites_doi | 10.1093/molbev/msi153 10.1126/science.1259442 10.1038/hdy.1994.134 10.1126/science.286.5445.1697 10.1104/pp.010790 10.1105/tpc.13.3.627 10.1038/hdy.2010.29 10.1534/genetics.107.080325 10.1104/pp.111.174912 10.1126/science.1062509 10.1126/science.1148910 10.1371/journal.pone.0001293 10.1093/genetics/153.1.391 10.1038/35097104 10.1093/genetics/158.1.387 10.1371/journal.pgen.1002495 10.1038/nplants.2016.206 10.1093/nar/gni178 10.1073/pnas.88.19.8816 10.1038/ng1734 10.1007/978-1-60327-005-2_4 10.1038/sj.hdy.6800526 10.1038/35002628 10.1105/tpc.022087 10.1046/j.1365-2540.1998.00295.x 10.1038/nature09308 10.1186/1748-7188-6-26 10.1371/journal.pgen.1000168 10.1186/gb-2009-10-3-r25 10.1073/pnas.040556397 10.1371/journal.pbio.0040303 |
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| Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 These authors contributed equally to this work. Present address: Plant Breeding and Experiment Station, Takii and Company, Limited, Konan, Shiga 520-3231, Japan. |
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| Snippet | Self-incompatibility (SI) is conserved among members of the Brassicaceae plant family. This trait is controlled epigenetically by the dominance hierarchy of... |
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| StartPage | 6990 |
| SubjectTerms | Alleles Arabidopsis lyrata Brassicaceae DNA methylation Dominance Dominance hierarchies dominance hierarchy epigenetics Haplotypes Homology Incompatibility Kinases MicroRNAs Model testing Self-incompatibility small RNA |
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| Title | Homology-Based Interactions between Small RNAs and Their Targets Control Dominance Hierarchy of Male Determinant Alleles of Self-Incompatibility in Arabidopsis lyrata |
| URI | https://www.proquest.com/docview/2549410915 https://search.proquest.com/docview/2548400538 https://pubmed.ncbi.nlm.nih.gov/PMC8268441 https://doaj.org/article/38487b1189b94225be5e12ac03a9b971 |
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