The Interplay of HIV and Autophagy in Early Infection

HIV/AIDS is still a global threat despite the notable efforts made by the scientific and health communities to understand viral infection, to design new drugs or to improve existing ones, as well as to develop advanced therapies and vaccine designs for functional cure and viral eradication. The iden...

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Published inFrontiers in microbiology Vol. 12; p. 661446
Main Authors Cabrera-Rodríguez, Romina, Pérez-Yanes, Silvia, Estévez-Herrera, Judith, Márquez-Arce, Daniel, Cabrera, Cecilia, Espert, Lucile, Blanco, Julià, Valenzuela-Fernández, Agustín
Format Journal Article
LanguageEnglish
Published Switzerland Frontiers Media 28.04.2021
Frontiers Media S.A
Subjects
autophagy
cell-death
early infection
Env signaling
HIV-1
Life Sciences
Microbiology
HIV-1
cell-death
early infection
autophagy
Env signaling
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Abstract HIV/AIDS is still a global threat despite the notable efforts made by the scientific and health communities to understand viral infection, to design new drugs or to improve existing ones, as well as to develop advanced therapies and vaccine designs for functional cure and viral eradication. The identification and analysis of HIV-1 positive individuals that naturally control viral replication in the absence of antiretroviral treatment has provided clues about cellular processes that could interact with viral proteins and RNA and define subsequent viral replication and clinical progression. This is the case of autophagy, a degradative process that not only maintains cell homeostasis by recycling misfolded/old cellular elements to obtain nutrients, but is also relevant in the innate and adaptive immunity against viruses, such as HIV-1. Several studies suggest that early steps of HIV-1 infection, such as virus binding to CD4 or membrane fusion, allow the virus to modulate autophagy pathways preparing cells to be permissive for viral infection. Confirming this interplay, strategies based on autophagy modulation are able to inhibit early steps of HIV-1 infection. Moreover, autophagy dysregulation in late steps of the HIV-1 replication cycle may promote autophagic cell-death of CD4 T cells or control of HIV-1 latency, likely contributing to disease progression and HIV persistence in infected individuals. In this scenario, understanding the molecular mechanisms underlying HIV/autophagy interplay may contribute to the development of new strategies to control HIV-1 replication. Therefore, the aim of this review is to summarize the knowledge of the interplay between autophagy and the early events of HIV-1 infection, and how autophagy modulation could impair or benefit HIV-1 infection and persistence, impacting viral pathogenesis, immune control of viral replication, and clinical progression of HIV-1 infected patients.
AbstractList HIV/AIDS is still a global threat despite the notable efforts made by the scientific and health communities to understand viral infection, to design new drugs or to improve existing ones, as well as to develop advanced therapies and vaccine designs for functional cure and viral eradication. The identification and analysis of HIV-1 positive individuals that naturally control viral replication in the absence of antiretroviral treatment has provided clues about cellular processes that could interact with viral proteins and RNA and define subsequent viral replication and clinical progression. This is the case of autophagy, a degradative process that not only maintains cell homeostasis by recycling misfolded/old cellular elements to obtain nutrients, but is also relevant in the innate and adaptive immunity against viruses, such as HIV-1. Several studies suggest that early steps of HIV-1 infection, such as virus binding to CD4 or membrane fusion, allow the virus to modulate autophagy pathways preparing cells to be permissive for viral infection. Confirming this interplay, strategies based on autophagy modulation are able to inhibit early steps of HIV-1 infection. Moreover, autophagy dysregulation in late steps of the HIV-1 replication cycle may promote autophagic cell-death of CD4 + T cells or control of HIV-1 latency, likely contributing to disease progression and HIV persistence in infected individuals. In this scenario, understanding the molecular mechanisms underlying HIV/autophagy interplay may contribute to the development of new strategies to control HIV-1 replication. Therefore, the aim of this review is to summarize the knowledge of the interplay between autophagy and the early events of HIV-1 infection, and how autophagy modulation could impair or benefit HIV-1 infection and persistence, impacting viral pathogenesis, immune control of viral replication, and clinical progression of HIV-1 infected patients.
HIV/AIDS is still a global threat despite the notable efforts made by the scientific and health communities to understand viral infection, to design new drugs or to improve existing ones, as well as to develop advanced therapies and vaccine designs for functional cure and viral eradication. The identification and analysis of HIV-1 positive individuals that naturally control viral replication in the absence of antiretroviral treatment has provided clues about cellular processes that could interact with viral proteins and RNA and define subsequent viral replication and clinical progression. This is the case of autophagy, a degradative process that not only maintains cell homeostasis by recycling misfolded/old cellular elements to obtain nutrients, but is also relevant in the innate and adaptive immunity against viruses, such as HIV-1. Several studies suggest that early steps of HIV-1 infection, such as virus binding to CD4 or membrane fusion, allow the virus to modulate autophagy pathways preparing cells to be permissive for viral infection. Confirming this interplay, strategies based on autophagy modulation are able to inhibit early steps of HIV-1 infection. Moreover, autophagy dysregulation in late steps of the HIV-1 replication cycle may promote autophagic cell-death of CD4 + T cells or control of HIV-1 latency, likely contributing to disease progression and HIV persistence in infected individuals. In this scenario, understanding the molecular mechanisms underlying HIV/autophagy interplay may contribute to the development of new strategies to control HIV-1 replication. Therefore, the aim of this review is to summarize the knowledge of the interplay between autophagy and the early events of HIV-1 infection, and how autophagy modulation could impair or benefit HIV-1 infection and persistence, impacting viral pathogenesis, immune control of viral replication, and clinical progression of HIV-1 infected patients.
HIV/AIDS is still a global threat despite the notable efforts made by the scientific and health communities to understand viral infection, to design new drugs or to improve existing ones, as well as to develop advanced therapies and vaccine designs for functional cure and viral eradication. The identification and analysis of HIV-1 positive individuals that naturally control viral replication in the absence of antiretroviral treatment has provided clues about cellular processes that could interact with viral proteins and RNA and define subsequent viral replication and clinical progression. This is the case of autophagy, a degradative process that not only maintains cell homeostasis by recycling misfolded/old cellular elements to obtain nutrients, but is also relevant in the innate and adaptive immunity against viruses, such as HIV-1. Several studies suggest that early steps of HIV-1 infection, such as virus binding to CD4 or membrane fusion, allow the virus to modulate autophagy pathways preparing cells to be permissive for viral infection. Confirming this interplay, strategies based on autophagy modulation are able to inhibit early steps of HIV-1 infection. Moreover, autophagy dysregulation in late steps of the HIV-1 replication cycle may promote autophagic cell-death of CD4 T cells or control of HIV-1 latency, likely contributing to disease progression and HIV persistence in infected individuals. In this scenario, understanding the molecular mechanisms underlying HIV/autophagy interplay may contribute to the development of new strategies to control HIV-1 replication. Therefore, the aim of this review is to summarize the knowledge of the interplay between autophagy and the early events of HIV-1 infection, and how autophagy modulation could impair or benefit HIV-1 infection and persistence, impacting viral pathogenesis, immune control of viral replication, and clinical progression of HIV-1 infected patients.
Author Márquez-Arce, Daniel
Cabrera-Rodríguez, Romina
Blanco, Julià
Pérez-Yanes, Silvia
Espert, Lucile
Cabrera, Cecilia
Estévez-Herrera, Judith
Valenzuela-Fernández, Agustín
AuthorAffiliation 3 Institut de Recherche en Infectiologie de Montpellier, Université de Montpellier , CNRS, Montpellier , France
2 AIDS Research Institute IrsiCaixa, Institut de Recerca en Ciències de la Salut Germans Trias i Pujol (IGTP) , Barcelona , Spain
4 Universitat de Vic-Central de Catalunya (UVIC-UCC) , Catalonia , Spain
1 Laboratorio de Inmunología Celular y Viral, Unidad de Farmacología, Sección de Medicina, Facultad de Ciencias de la Salud, e IUETSPC de la Universidad de La Laguna, Campus de Ofra s/n , Tenerife , Spain
AuthorAffiliation_xml – name: 1 Laboratorio de Inmunología Celular y Viral, Unidad de Farmacología, Sección de Medicina, Facultad de Ciencias de la Salud, e IUETSPC de la Universidad de La Laguna, Campus de Ofra s/n , Tenerife , Spain
– name: 2 AIDS Research Institute IrsiCaixa, Institut de Recerca en Ciències de la Salut Germans Trias i Pujol (IGTP) , Barcelona , Spain
– name: 4 Universitat de Vic-Central de Catalunya (UVIC-UCC) , Catalonia , Spain
– name: 3 Institut de Recherche en Infectiologie de Montpellier, Université de Montpellier , CNRS, Montpellier , France
Author_xml – sequence: 1
  givenname: Romina
  surname: Cabrera-Rodríguez
  fullname: Cabrera-Rodríguez, Romina
  organization: Laboratorio de Inmunología Celular y Viral, Unidad de Farmacología, Sección de Medicina, Facultad de Ciencias de la Salud, e IUETSPC de la Universidad de La Laguna, Campus de Ofra s/n, Tenerife, Spain
– sequence: 2
  givenname: Silvia
  surname: Pérez-Yanes
  fullname: Pérez-Yanes, Silvia
  organization: Laboratorio de Inmunología Celular y Viral, Unidad de Farmacología, Sección de Medicina, Facultad de Ciencias de la Salud, e IUETSPC de la Universidad de La Laguna, Campus de Ofra s/n, Tenerife, Spain
– sequence: 3
  givenname: Judith
  surname: Estévez-Herrera
  fullname: Estévez-Herrera, Judith
  organization: Laboratorio de Inmunología Celular y Viral, Unidad de Farmacología, Sección de Medicina, Facultad de Ciencias de la Salud, e IUETSPC de la Universidad de La Laguna, Campus de Ofra s/n, Tenerife, Spain
– sequence: 4
  givenname: Daniel
  surname: Márquez-Arce
  fullname: Márquez-Arce, Daniel
  organization: Laboratorio de Inmunología Celular y Viral, Unidad de Farmacología, Sección de Medicina, Facultad de Ciencias de la Salud, e IUETSPC de la Universidad de La Laguna, Campus de Ofra s/n, Tenerife, Spain
– sequence: 5
  givenname: Cecilia
  surname: Cabrera
  fullname: Cabrera, Cecilia
  organization: AIDS Research Institute IrsiCaixa, Institut de Recerca en Ciències de la Salut Germans Trias i Pujol (IGTP), Barcelona, Spain
– sequence: 6
  givenname: Lucile
  surname: Espert
  fullname: Espert, Lucile
  organization: Institut de Recherche en Infectiologie de Montpellier, Université de Montpellier, CNRS, Montpellier, France
– sequence: 7
  givenname: Julià
  surname: Blanco
  fullname: Blanco, Julià
  organization: Universitat de Vic-Central de Catalunya (UVIC-UCC), Catalonia, Spain
– sequence: 8
  givenname: Agustín
  surname: Valenzuela-Fernández
  fullname: Valenzuela-Fernández, Agustín
  organization: Laboratorio de Inmunología Celular y Viral, Unidad de Farmacología, Sección de Medicina, Facultad de Ciencias de la Salud, e IUETSPC de la Universidad de La Laguna, Campus de Ofra s/n, Tenerife, Spain
BackLink https://www.ncbi.nlm.nih.gov/pubmed/33995324$$D View this record in MEDLINE/PubMed
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Cites_doi 10.1038/cdd.2009.115
10.1006/geno.2001.6555
10.1016/j.coviro.2015.06.007
10.1016/j.coviro.2019.05.010
10.1126/science.1227901
10.1126/science.270.5243.1811
10.1038/nm0703-853
10.1073/pnas.1222205110
10.1186/1744-8603-7-31
10.1038/nature04723
10.1002/rmv.1872
10.1371/journal.ppat.1005142
10.1371/journal.ppat.1007432
10.1002/jcp.1041520304
10.1371/journal.pmed.1002417
10.1038/ni.1720
10.1083/jcb.201002100
10.1371/journal.pone.0005787
10.1016/j.abb.2009.07.017
10.1242/jcs.091041
10.1006/geno.1999.5851
10.1172/jci26185
10.1016/j.chom.2014.03.012
10.1242/jcs.035873
10.1038/nm1196-1244
10.4161/auto.8788
10.2174/1874613601610010065
10.1080/15548627.2019.1666594
10.1016/j.immuni.2010.02.009
10.1016/j.ymthe.2017.04.027
10.3390/cells9051090
10.1189/jlb.0204100
10.1083/jcb.200712064
10.1016/s0168-1702(99)00002-7
10.1016/j.jmb.2018.04.018
10.1038/381667a0
10.1038/s41577-018-0085-4
10.1128/jvi.66.11.6777-6780.1992
10.1007/s40121-018-0201-6
10.1016/s0021-9258(17)32707-2
10.3390/v13010024
10.1074/jbc.m111889200
10.1016/s0896-6273(00)81031-4
10.4161/auto.6880
10.1080/15548627.2020.1831814
10.1091/mbc.e08-12-1248
10.1038/cddis.2016.317
10.1016/j.immuni.2008.10.010
10.1016/j.cub.2015.05.042
10.1006/bbrc.1998.8546
10.1016/S1097-2765(03)00498-2
10.1038/nature07208
10.1097/00002030-200211220-00016
10.3390/cells8101245
10.1038/onc.2014.454
10.1111/j.1365-2141.2000.02325.x
10.1038/nrd.2017.22
10.1101/cshperspect.a006866
10.4161/auto.3618
10.1007/s11904-018-0378-z
10.1016/j.immuni.2012.03.003
10.1097/qad.0b013e3280d5a7ac
10.1101/cshperspect.a007096
10.1089/088922202753472801
10.1007/s00281-010-0227-7
10.1038/nature04724
10.1128/JVI.00034-17
10.1126/scisignal.266pe23
10.1016/j.cmet.2009.10.008
10.1016/j.ceb.2009.11.014
10.1016/j.immuni.2006.10.018
10.1016/j.mib.2013.05.006
10.1038/ng1362
10.1074/jbc.m509157200
10.1101/gad.219642.113
10.2353/ajpath.2008.070876
10.3389/fimmu.2018.02876
10.1016/s0014-5793(97)00156-7
10.1016/j.tcb.2008.04.003
10.1038/nature21032
10.3389/fimmu.2012.00097
10.1097/qad.0000000000002697
10.1007/BF00239447
10.1083/jcb.110.6.1923
10.1093/emboj/16.15.4606
10.1016/j.chom.2013.05.004
10.1101/gad.2016311
10.1126/science.3001934
10.1083/jcb.201205129
10.1128/JVI.00841-17
10.1074/jbc.m110.182238
10.1038/s41419-020-2399-y
10.1074/jbc.m702824200
10.1186/s12977-019-0480-3
10.1016/j.ebiom.2015.01.008
10.1242/jcs.00381
10.1247/csf.27.421
10.1002/eji.200323730
10.1172/jci73937
10.1172/jci45235
10.1038/nature18929
10.4161/auto.3275
10.1073/pnas.79.6.1889
10.1038/nri2935
10.1128/jvi.02174-14
10.1097/qad.0000000000000049
10.1016/j.coviro.2013.09.004
10.1126/science.1104904
10.1186/s12977-015-0181-5
10.1146/annurev-biochem-052709-094552
10.1074/jbc.m703663200
10.1371/journal.ppat.1003017
10.1038/nrdp.2015.35
10.4161/auto.21459
10.1074/jbc.m803180200
10.1038/gt.2016.41
10.4161/auto.7.12.17802
10.1126/science.1087782
10.1080/01459740.2014.892483
10.1126/science.1106036
10.1371/journal.pone.0011079
10.1126/science.1196371
10.1186/1742-6405-9-16
10.1007/s00018-008-8147-6
10.1016/s0014-5793(00)01751-8
10.1080/15548627.2019.1596493
10.1128/jvi.73.4.2752-2761.1999
10.1038/ncb1610
10.1128/jvi.02022-14
10.1038/s41586-018-0804-9
10.1039/c9an02098e
10.1016/j.cell.2010.04.009
10.1097/qad.0b013e3282f4a836
10.1091/mbc.e10-10-0860
10.1038/cddis.2017.501
10.1097/coh.0b013e32832d9fef
10.3389/fcell.2020.00343
10.1371/journal.ppat.1000781
10.1126/science.1205405
10.4161/15548627.2014.984278
10.1126/science.1152725
10.1099/vir.0.027102-0
10.1186/1743-422x-9-69
10.1006/viro.2002.1764
10.1016/j.cell.2004.11.038
10.1158/2159-8290.cd-14-0049
10.1093/infdis/jir163
10.1038/nm.3489
10.4049/jimmunol.1501588
10.1089/aid.1996.12.783
10.1086/588791
10.1074/jbc.m609532200
10.1007/s11904-017-0357-9
10.4161/auto.6.4.11863
10.1111/boc.201900071
10.2174/1389450116666150825120735
10.1084/jem.186.10.1793
10.4161/auto.4964
10.1093/bmb/58.1.43
10.3389/fimmu.2016.00167
10.1074/jbc.m508786200
10.4161/auto.25188
10.2217/fvl-2018-0207
10.1126/science.aaz7714
10.1186/1742-4690-10-39
10.1080/15548627.2015.1073434
10.1038/ncb2078
10.1152/ajplung.00418.2015
10.1182/blood-2012-01-402404
10.1038/ncomms1697
10.1038/sj.onc.1208331
10.1126/science.1136880
10.1186/1742-4690-11-33
10.1186/2052-8426-2-20
10.1128/jb.182.8.2125-2133.2000
10.4161/auto.20339
10.1038/nm1574
10.1091/mbc.e08-01-0080
10.1038/s41598-019-42075-3
10.1038/mt.2014.52
10.1086/526786
10.1073/pnas.95.15.8869
10.1158/2159-8290.cd-14-0362
10.1128/mcb.21.23.8035-8044.2001
10.1083/jcb.200103107
10.1016/j.chom.2014.01.009
10.1038/nature09782
10.1002/cbdv.201800159
10.1186/1479-5876-9-S1-S10
10.1016/j.antiviral.2005.07.006
10.1016/j.immuni.2016.08.014
10.1006/viro.2001.0969
10.1186/gb-2011-12-7-226
10.1016/j.ebiom.2020.103118
10.1086/653677
10.1074/jbc.c700195200
10.1097/qad.0000000000000554
10.1371/journal.pone.0077663
10.1073/pnas.0402361101
10.1056/NEJMoa0908492
10.1007/s11904-018-0374-3
10.1128/jvi.00053-08
10.1093/emboj/18.6.1480
10.1128/jvi.78.17.9164-9173.2004
10.1038/s41586-020-03056-z
10.1038/nature05853
10.1073/pnas.0402874101
10.1128/jvi.00649-09
10.15252/embj.201796697
10.1016/j.cell.2007.05.021
10.1186/1742-4690-6-89
10.1016/s0076-6879(05)04037-1
10.1073/pnas.1511144112
10.1093/emboj/18.14.3888
10.4049/jimmunol.181.12.8460
10.1091/mbc.e02-09-0573
10.1097/coh.0b013e32834fcff6
10.1083/jcb.201110114
10.1016/s0092-8674(00)81314-8
10.1128/jvi.76.2.707-716.2002
10.1111/j.1600-0854.2004.00209.x
10.1074/jbc.m003868200
10.1016/j.immuni.2010.04.011
10.1128/jvi.00387-10
10.1038/nm1728
10.3389/fncel.2019.00196
10.1111/febs.13540
10.1074/jbc.m110.206110
10.7554/eLife.43088
10.1038/417455a
10.3390/medicina55060297
10.1247/csf.23.33
10.1073/pnas.96.26.15109
10.1093/emboj/19.21.5720
10.1016/j.devcel.2011.02.006
10.1097/00002030-199703110-00007
10.4161/auto.28678
10.1016/j.devcel.2014.06.013
10.1007/s11033-014-3754-9
10.1038/nature11866
10.1182/blood-2004-09-3556
10.1007/978-981-15-0606-2_5
10.1016/j.immuni.2005.01.006
10.1097/qad.0b013e3282efb74b
10.1038/nm1196-1240
10.1128/jcm.41.8.3559-3565.2003
10.1016/S2352-3018(14)70014-1
10.1038/cdd.2014.150
10.1038/nature24634
10.1016/j.tim.2019.06.002
10.1038/srep40351
10.1073/pnas.2436255100
10.2217/14796708.3.3.309
10.1016/j.molcel.2014.05.021
10.1074/jbc.m111.254417
10.1074/jbc.m804478200
10.3390/v3040293
10.1128/jvi.72.11.8586-8596.1998
10.1016/S2352-3018(20)30117-X
10.1016/j.jmb.2011.04.042
10.1074/jbc.m303800200
10.1182/blood-2008-02-137398
10.1074/jbc.r300026200
10.1186/s12977-016-0255-z
10.1038/ncb1846
10.1007/s00018-015-1917-z
10.1007/s11904-010-0069-x
10.1128/jvi.02165-06
10.3390/v8090248
10.1046/j.1365-2958.2003.03208.x
10.1016/s0014-5793(02)03410-5
10.4049/jimmunol.181.10.6882
10.1038/s41591-018-0026-6
10.1126/scisignal.aaf1937
10.1111/j.1365-2443.2007.01041.x
10.1371/journal.pone.0011733
10.1038/381661a0
10.1038/ncomms8888
10.1006/geno.1998.5340
10.1016/j.virol.2015.03.042
10.1007/s13365-020-00906-4
10.1093/hmg/ddu125
10.1080/02648725.2018.1471641
10.1084/jem.20030648
10.1083/jcb.200803137
10.1182/blood-2010-06-288589
10.1091/mbc.e10-08-0722
10.1038/nm.3445
10.1038/nature02343
10.1002/jcp.22821
10.1016/j.cell.2017.11.032
10.1073/pnas.94.24.13193
10.1074/mcp.m112.025775
10.1016/j.biopha.2006.08.002
10.1016/j.cell.2008.06.036
10.1093/jac/dku147
10.1371/journal.pone.0021261
10.1038/emboj.2008.31
10.1056/nejmoa0802905
10.3390/v9100270
10.1084/jem.187.10.1623
10.3390/cells4020202
10.4049/jimmunol.135.5.3151
10.1074/jbc.m802182200
10.1016/j.febslet.2010.02.017
10.1016/j.chom.2009.09.006
10.1128/jvi.01898-13
10.1089/088922204322749567
10.1016/j.immuni.2009.12.006
10.1038/ncb1854
10.1371/journal.pone.0003292
10.1073/pnas.0704014104
10.1128/jvi.01763-08
10.1038/ncb1740
10.1086/646609
10.1038/45257
10.1073/pnas.0701311104
10.1038/nrmicro3503
10.1371/journal.pone.0191709
10.1016/j.coph.2020.09.017
10.1074/jbc.m117.777714
10.1083/jcb.200903070
10.4161/auto.5.5.8249
10.1042/bst0330639
10.1371/journal.ppat.1004473
10.1074/jbc.m000776200
10.1074/jbc.m109.037671
10.4168/aair.2021.13.1.106
10.1128/JVI.00237-20
10.1016/j.str.2015.07.011
10.1007/s12035-016-0118-6
10.1097/qad.0b013e32832d0825
10.1016/j.molimm.2018.05.009
10.1371/journal.ppat.1002689
10.1093/infdis/165.3.427
10.1016/j.cell.2013.08.044
10.1074/jbc.m112.378109
10.1016/j.immuni.2007.08.010
10.4161/auto.7.7.15279
10.1126/science.1195271
10.1038/ncb3215
10.1016/j.str.2013.09.023
10.1091/mbc.e05-04-0354
10.1016/s0092-8674(00)81540-8
10.1242/jcs.01131
10.1007/82_2015_437
10.1371/journal.ppat.1005018
10.1073/pnas.96.20.10958
10.1182/blood-2010-09-309591
10.1016/s0092-8674(00)81313-6
10.1128/jvi.69.3.1810-1818.1995
10.1038/nrg2749
10.1038/s41467-020-20218-9
10.1016/j.freeradbiomed.2014.03.025
10.1371/journal.ppat.1003161
10.1016/bs.aivir.2016.02.002
10.1097/00002030-199509000-00016
10.3389/fimmu.2017.01616
10.1038/40173
10.4161/auto.19496
10.1002/jemt.21006
10.1038/382829a0
10.1093/jac/dkx118
10.1016/j.bbrc.2013.06.111
10.1016/s0092-8674(03)00939-5
10.1007/s11064-019-02788-3
10.1091/mbc.e09-12-1063
10.4161/auto.21486
10.1016/j.febslet.2010.04.041
10.1371/journal.ppat.1009017
10.1128/JVI.01402-16
10.1111/j.1348-0421.2010.00259.x
10.33594/000000224
10.1126/scisignal.284pe51
10.1186/1742-4690-7-96
10.1083/jcb.200912089
10.1016/j.chom.2010.01.007
10.1016/j.coph.2019.03.003
10.1089/088922204322996545
10.1128/jvi.66.3.1354-1360.1992
10.1371/journal.ppat.1003599
10.1101/gad.237354.113
10.1126/science.1103966
10.1126/science.1179555
10.1016/s0092-8674(00)80110-5
10.3389/fmicb.2015.00653
10.1089/aid.2009.0010
10.1083/jcb.201710116
10.1371/journal.ppat.1002422
10.1172/jci20039
10.1038/nature20567
10.1177/2515135518800689
10.1086/596067
10.1016/j.jcyt.2017.05.013
10.1074/jbc.272.11.6854
10.1146/annurev-cellbio-092910-154005
10.1097/coh.0b013e3283454d5b
10.1172/jci117560
10.1038/ncb2021
10.1128/jvi.00548-10
10.1128/jvi.77.4.2539-2549.2003
10.1002/pmic.200700306
10.1172/jci11109
10.1056/nejmc1405805
10.3390/cells9051179
10.7326/0003-4819-127-10-199711150-00004
10.3389/fimmu.2018.02429
10.1038/nature14587
10.1128/jvi.79.23.14748-14755.2005
10.1016/s0014-5793(98)01646-9
10.1038/sj.emboj.7601210
10.1038/ni.1823
10.1126/science.8356453
10.1038/mt.2016.24
10.1038/ni.3157
10.1091/mbc.e03-10-0732
10.1038/s41594-019-0203-4
10.1056/nejmc1413931
10.1128/mBio.00922-17
10.1083/jcb.200104019
10.1002/eji.1830270629
10.1089/ars.2011.4396
10.1101/gad.2016111
10.1038/cdd.2009.39
10.1086/433188
10.1111/joim.12596
10.1038/nrm2708
10.1093/infdis/jiy346
10.1158/0008-5472.can-08-0161
10.1186/1742-4690-7-94
10.1038/s41594-020-00518-w
10.1083/jcb.139.1.49
10.1038/nri.2017.125
10.1086/605446
10.15252/embr.201948412
10.4161/auto.5338
10.1097/qad.0b013e32832b44c8
10.1186/s12977-015-0150-z
10.1016/j.cell.2008.12.022
10.1038/nrc3262
10.1038/nature16933
10.1016/j.ebiom.2016.07.024
10.1016/j.molcel.2009.01.020
10.1189/jlb.0805430
10.1038/icb.2016.59
10.1371/journal.ppat.1000670
10.1186/1742-2094-7-96
10.1073/pnas.172511699
10.1128/mcb.01396-08
10.1083/jcb.201202061
10.1172/jci80563
10.1083/jcb.136.1.61
10.1091/mbc.02-04-0053
10.1186/1742-4690-6-4
10.1091/mbc.e08-12-1249
10.1042/cs20080508
10.1016/j.coviro.2019.07.007
10.1038/312763a0
10.1038/nrmicro3490
10.7326/m14-1027
10.1038/sj.onc.1202988
10.1016/j.molcel.2013.12.014
10.1128/jvi.05746-11
10.1056/NEJMoa1608243
10.1128/jvi.77.13.7383-7392.2003
10.1038/emboj.2009.405
10.4161/auto.22931
10.1083/jcb.110.6.1935
10.1128/jvi.67.4.1772-1777.1993
10.1111/imm.12148
10.1074/jbc.m900573200
10.1126/scisignal.aac5472
10.1111/j.1365-2249.2011.04463.x
10.4161/auto.5211
10.1016/j.chom.2016.02.012
10.1126/science.278.5341.1291
10.3389/fmicb.2019.02437
10.1038/s41594-018-0113-x
10.1126/science.278.5341.1295
10.1126/science.272.5270.1955
10.1128/jvi.00419-16
10.1016/j.chom.2009.07.005
10.1073/pnas.0501190102
10.7554/eLife.00947
10.1084/jem.20090378
10.1111/imr.12507
10.1371/journal.ppat.1007222
10.1038/emboj.2010.74
10.1242/jcs.03172
10.1016/j.immuni.2005.03.009
10.1128/mBio.02338-17
10.4161/auto.29264
10.1074/jbc.m607031200
10.1038/s41598-020-58696-y
10.1038/s41586-019-1027-4
10.1038/382722a0
ContentType Journal Article
Copyright Copyright © 2021 Cabrera-Rodríguez, Pérez-Yanes, Estévez-Herrera, Márquez-Arce, Cabrera, Espert, Blanco and Valenzuela-Fernández.
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Copyright © 2021 Cabrera-Rodríguez, Pérez-Yanes, Estévez-Herrera, Márquez-Arce, Cabrera, Espert, Blanco and Valenzuela-Fernández. 2021 Cabrera-Rodríguez, Pérez-Yanes, Estévez-Herrera, Márquez-Arce, Cabrera, Espert, Blanco and Valenzuela-Fernández
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Keywords HIV-1
cell-death
early infection
autophagy
Env signaling
Language English
License Copyright © 2021 Cabrera-Rodríguez, Pérez-Yanes, Estévez-Herrera, Márquez-Arce, Cabrera, Espert, Blanco and Valenzuela-Fernández.
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This article was submitted to Virology, a section of the journal Frontiers in Microbiology
Edited by: Fatah Kashanchi, George Mason University, United States
Reviewed by: Grant Campbell, University of California, San Diego, United States; Nazira El-Hage, Florida International University, United States
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References Tuttle (B443) 2004; 20
Henrich (B199) 2017; 14
Mizushima (B319) 2002; 27
Goodsell (B175) 2015; 389
Knævelsrud (B241) 2013; 202
Mercer (B314) 2009; 5
Aguilera (B1) 2012; 8
Shah (B414) 2010; 7
Cavarelli (B71) 2008; 3
Mauthe (B306) 2011; 7
Lee (B264) 2010; 29
Altfeld (B13) 2015; 16
Tang (B437) 2019; 15
Monaco (B323) 2020; 34
Zhu (B503) 2002; 76
Diop (B127) 2006; 60
Stremlau (B432) 2004; 427
Dasari (B106) 2016; 94
Joubert (B222) 2009; 6
Bhatt (B32) 2012; 3
Obara (B344) 2008; 283
Shaik (B416) 2019; 565
Staropoli (B428) 2000; 275
Mao (B296) 2019; 1209
Richetta (B389) 2013; 9
Dooley (B133) 2014; 55
Jounai (B223) 2007; 104
Knaevelsrud (B240) 2010; 584
Yoder (B488) 2008; 134
Lamine (B260) 2007; 21
Pankiv (B353) 2007; 282
Castillo (B70) 2013; 9
Casado (B69) 2013; 8
Liu (B280) 2010; 116
Zhang (B494); 489
Reece (B385) 1998; 187
English (B146) 2009; 10
Yoon (B489) 2017; 8
Goulder (B177) 2018; 14
Rotger (B397) 2010; 6
Limou (B278) 2009; 199
Evering (B152) 2018; 15
Vogl (B459) 2014; 10
Sawa-Makarska (B405) 2020; 369
Seigneurin-Berny (B413) 2001; 21
Proikas-Cezanne (B369) 2004; 23
Franco (B160) 1999; 18
Mens (B313) 2010; 84
Shpilka (B419) 2011; 12
Wang (B463) 2015; 42
Barrero-Villar (B26) 2009; 122
Schuurman (B410) 2002; 18
Espert (B147) 2008; 4
Garg (B171) 2008; 65
Weatherley (B465) 2017; 8
Mizushima (B320) 2011; 27
Davey (B109) 1999; 96
Dragic (B137) 1996; 381
Jolly (B220) 2004; 5
Liang (B275) 2014; 15
Joshi (B221) 2016; 196
Mi (B315) 2015; 17
Viret (B457) 2018; 430
Liu (B283) 2019; 44
Zhou (B499) 2011; 203
Valenzuela-Fernandez (B449) 2008; 18
Poropatich (B367) 2011; 92
Kirkin (B237) 2009; 33
Radhakrishna (B378) 1997; 139
Salazar-Gonzalez (B400) 2009; 206
Romano (B393) 2010; 17
Mohammadi (B321) 2013; 9
Casado (B66) 2010; 5
Soliman (B424) 2017; 14
Bach (B22) 2010; 21
Noda (B342) 2015; 72
Sagnier (B398) 2015; 89
Decroly (B115) 1997; 405
Powner (B368) 2002; 531
van Marle (B453) 2018; 34
Mizushima (B317) 2003; 116
Zhou (B498) 2005; 22
Naslavsky (B336) 2003; 14
Blankson (B39) 2007; 81
Seglen (B412) 1982; 79
Bar-Yosef (B27) 2019; 13
Cornelissen (B100) 1995; 69
Borel (B42) 2012; 3
Rojas-Celis (B392) 2019; 8
Qi (B375) 2015; 23
Chanel (B76) 2002; 16
Komatsu (B246) 2006; 441
Liu (B281) 2021; 13
Moreau (B325) 2012; 196
Lee (B262) 2007; 315
Zhong (B497) 2009; 11
Puri (B372) 2013; 154
Liang (B273) 2008; 10
Canducci (B62) 2009; 6
Mari (B298) 2010; 190
Oh (B347) 2019; 15
Colomer-Lluch (B96) 2018; 9
Valenzuela-Fernandez (B448) 2005; 16
El-Hage (B144) 2015; 89
Wild (B473) 2011; 333
Zhou (B501) 2016; 310
Daussy (B107) 2020
Galluzzi (B164); 36
Kabeya (B227) 2004; 117
Chung (B88) 2014; 11
Egan (B143) 2011; 331
Kordelas (B249) 2014; 371
Mandell (B294); 30
Pasi (B354) 2000; 111
Tomoda (B440) 1999; 24
Straubinger (B431) 2019; 10
Marrero-Hernández (B301) 2019; 10
Altfeld (B12) 2011; 11
Blanchet (B34) 2010; 32
Fujita (B163) 2009; 284
Finnegan (B157) 2004; 101
Kuritzkes (B255) 2016; 126
Lajoie (B258) 2009; 23
Yang (B487) 2010; 22
Jeffries (B216) 2004; 15
Yang (B486) 2011; 25
Markosyan (B299) 2003; 14
Yamaguchi (B480) 2009; 5
Meléndez (B310) 2003; 301
Meng (B312) 2011; 286
Honda (B203) 1999; 99
Axe (B21) 2008; 182
Arstila (B20) 1968; 53
Nakatogawa (B332) 2007; 130
Zhou (B500) 2008; 22
Young (B490) 2006; 119
Mandell (B295); 10
Stolp (B430) 2011; 3
Dörfel (B136) 2005; 105
Alemu (B6) 2012; 287
Bar (B24) 2016; 375
Gutierrez (B188) 2004; 119
Verzella (B456) 2020; 11
Buzon (B54) 2014; 20
Zhu (B502) 1993; 261
Spijkerman (B426) 1995; 9
Campbell (B58) 2011; 286
Galluzzi (B165); 16
Nivon (B341) 2009; 5
Hermankova (B201) 2003; 77
Mailler (B291) 2016; 8
Carrillo (B65) 2018; 9
Quitadamo (B377) 2018; 92
Luzuriaga (B290) 2015; 372
Désaulniers (B123) 2020; 13
Alkhatib (B9) 1996; 272
Harada (B193) 2019; 8
Suzuki (B435) 2014; 22
Schmid (B407) 2007; 26
Yan (B483) 1998; 246
Campbell (B60); 8
Grégoire (B180) 2011; 7
Ganley (B166) 2009; 284
Chaumorcel (B78) 2012; 86
Kopito (B248) 2003; 12
Doitsh (B129) 2016; 19
Puigdomenech (B370) 2009; 6
Yan (B484) 1999; 18
Garcia-Exposito (B168) 2011; 22
Delgado (B119) 2008; 27
Killian (B236) 2012; 9
Valečka (B447) 2018; 99
Hara (B191) 2006; 441
Brass (B47) 2008; 319
Kumar (B253) 2018; 6
Longatti (B285) 2009; 16
Gu (B183) 2020; 54
(B445) 2020
Clapham (B90) 2001; 58
Nardacci (B335) 2017; 281
Hosokawa (B206) 2009; 20
Mostashari Rad (B327) 2018; 15
Aguzzi (B2) 2013; 339
Bandera (B23) 2019; 48
Bhatnagar (B31) 2012; 227
Zhang (B495); 136
Gómez-Sánchez (B174) 2018; 217
Travassos (B441) 2010; 11
Ananworanich (B15) 2016; 11
Matoba (B304) 2020; 27
Horvath (B205) 2010; 327
Jackson (B215) 2015
Krüger (B251) 1996; 12
Zwart (B506) 2005; 22
Katsuragi (B233) 2015; 282
Levonen (B267) 2014; 71
Espert (B148) 2006; 116
Allers (B10) 2011; 117
Samson (B402) 1996; 382
Vakifahmetoglu-Norberg (B446) 2015; 125
Hook (B204) 2002; 99
Malet (B293) 2017; 8
Xu (B479) 2017; 25
Mailler (B292) 2019; 16
Pandey (B352) 2007; 447
Guo (B184) 2011; 25
Mizushima (B318) 1999; 18
Randow (B379) 2014; 15
Finzi (B158) 1997; 278
Ali (B8) 2018; 218
Connor (B98) 1993; 67
Filomeni (B156) 2015; 22
Decroly (B116) 1994; 269
Li (B271) 2018; 18
Cao (B63) 2016; 7
(B444) 2015
Chan (B73) 2009; 2
Willey (B475) 2005; 68
Migueles (B316) 2008; 29
Grobben (B182) 2019; 38
Bozic (B46) 2020; 21
Hatano (B194) 2009; 83
Keele (B235) 2009; 4
Pereyra (B360) 2009; 200
Nardacci (B334) 2014; 10
Deeks (B117) 2015; 1
Chen (B81) 2019; 27
Nakai (B330) 2007; 13
White (B471) 2012; 12
Korn (B250) 2003; 41
Blanco (B37) 2003; 305
López-Galíndez (B287) 2019; 14
Choe (B84) 1996; 85
Moulard (B328) 1999; 60
Alfaisal (B7) 2019; 111
Pereyra (B359) 2010; 330
Cherra (B83) 2008; 3
Rawat (B383) 2020; 94
Kaminski (B228); 23
Deng (B120) 1996; 381
Salgado (B401) 2010; 7
Liu (B282) 1996; 86
Vlahakis (B458) 2001; 107
Woldemeskel (B476) 2020; 62
Raymond (B384) 2014; 69
Couturier (B102) 2018; 15
de Armas-Rillo (B111) 2016; 26
Di Bartolomeo (B125) 2010; 191
Borel (B43) 2015; 29
Weidberg (B469) 2010; 29
Toda (B439) 1999; 442
Santy (B403) 2001; 154
Dunn (B139); 110
Dengjel (B121) 2005; 102
Karow (B230) 2020; 9
Ge (B173) 2013; 2
Birmingham (B33) 2006; 281
Campbell (B61) 2013; 16
Stultz (B433) 2017; 91
Yang (B485) 2014; 4
Iwata (B214) 2005; 280
van Grevenynghe (B451) 2008; 14
Hu (B207) 2016; 45
Aita (B4) 1999; 59
Kaminski (B229); 6
Orvedahl (B349) 2010; 7
Benjamin (B30) 2013; 13
Tsao (B442) 2016; 13
Donaldson (B130) 2003; 278
Borrajo (B44) 2019; 55
Komatsu (B245) 2010; 12
Marraffini (B300) 2010; 11
Lee (B263) 2010; 32
Leymarie (B269) 2017; 9
Sood (B425) 2017; 292
Stevenson (B429) 2003; 9
Dunn (B140); 110
Huang (B208) 1996; 2
Kundu (B254) 2008; 112
Schweighardt (B411) 2004; 78
Hatziioannou (B195) 2004; 101
Akbay (B5) 2020; 9
Jiang (B217) 2011; 22
Bolduc (B41) 2017; 91
Cavarelli (B72) 2011; 9
Gupta (B186) 2019; 568
Komatsu (B244) 2010; 584
Hailey (B189) 2010; 141
Shvets (B420) 2011; 7
Noel (B343) 2016; 90
Rosenbloom (B395) 2017; 551
Qu (B376) 2003; 112
Elliott (B145) 2014; 10
François (B161) 2003; 77
Jung (B225) 2009; 20
Richardson (B388) 2014; 22
Cabrera-Rodriguez (B55) 2019; 9
Hara (B192) 2008; 181
Paludan (B351) 2005; 307
Leonova (B265) 2020; 54
Aplin (B17) 1992; 152
Cocchi (B92) 1996; 2
Nedjic (B337) 2008; 455
Aikawa (B3) 2005; 404
Zhuo (B505) 2013; 437
Martinet (B302) 2009; 116
Kawaguchi (B234) 2003; 115
Henrich (B198) 2014; 161
Perera (B357) 2015; 524
Brazil (B48) 1997; 27
Cummins (B103) 2014; 2
Kast (B232) 2015; 25
Kabeya (B226) 2000; 19
Koike (B243) 2008; 172
Okulicz (B348) 2009; 200
Colin (B94) 2013; 110
Molina (B322) 2007; 7
Chang (B77) 2005; 79
Rohatgi (B391) 2015; 34
Jimenez-Baranda (B218) 2007; 9
Tang (B436) 2015; 2
Doranz (B134) 1999; 73
Walczak (B461) 2013; 9
Sutton (B434) 2013; 1
Liu (B284) 2009; 2
Perelson (B356) 1997; 11
Brelot (B49) 2000; 275
Klionsky (B239) 2008; 4
Campbell (B57) 2015; 11
Arhel (B19) 2010; 7
Søgaard (B423) 2015; 11
Yamamoto (B481) 1998; 23
Poku (B364) 2016; 10
Eekels (B142) 2012; 9
Denizot (B122) 2008; 4
Blanco (B38) 2000; 477
Farzan (B154) 1997; 272
Zhu (B504) 2015; 12
Gannage (B167) 2010; 32
Siliciano (B421) 2011; 1
Wilen (B474) 2012; 2
Matsunaga (B305) 2009; 11
Shi (B417) 2008; 283
Weissman (B470) 1997; 389
Lorenzo-Redondo (B289) 2016; 530
Nimmerjahn (B338) 2003; 33
Dabrowska (B104) 2008; 181
Levy (B268) 2014; 4
Brenner (B50) 2017; 72
Klionsky (B238) 2012; 8
Lang (B261) 2000; 182
Chun (B86) 1999; 96
Komatsu (B247) 2007; 104
Nishiyama (B339) 2007; 3
Donaldson (B131) 2005; 33
Zhang (B493) 2014; 23
van Grol (B452) 2010; 5
Blanco (B36) 2004; 76
Shah (B415) 2011; 6
Shoji-Kawata (B418) 2013; 494
Grabar (B178) 2009; 23
Garg (B172) 2009; 25
Ambinder (B14) 2020; 7
Rasmussen (B380) 2014; 1
Allers (B11) 2015; 14
Pinan-Lucarré (B363) 2003; 47
Grimmel (B181) 2015; 4
Brown (B51) 2001; 154
Py (B373) 2007; 3
Scheid (B406) 2016; 535
Staring (B427) 2017; 541
McDougal (B308) 1985; 135
Pickford (B362) 2008; 118
Schneck (B408) 2020; 145
Julg (B224) 2010; 51
Casado (B67) 2020; 10
DeBosch (B114) 2016; 9
Colvin (B97) 2011; 7
Dalgleish (B105) 1984; 312
Chun (B85) 1998; 95
Buckheit (B52) 2012; 3
Varbanov (B455) 2006; 8
Copetti (B99) 2009; 29
Davis (B110) 1997; 186
de Roda Husman (B113) 1997; 127
Vorster (B460) 2011; 286
Weidberg (B468); 80
Dong (B132) 2021; 589
Fass (B155) 2006; 281
Lambotte (B259) 2005; 41
Chen (B82) 2020; 26
Belmonte (B29) 2007; 21
Campbell (B59); 8
Valera (B450) 2015; 12
Mardones (B297) 2016; 9
Moore (B324) 2004; 20
Osawa (B350) 2019; 26
Lopez-Galindez (B288) 2019; 38
Polson (B365) 2010; 6
Casado (B68) 2018; 9
Boyault (B45) 2006; 25
Whittall (B472) 2011; 166
Longatti (B286) 2012; 8
Pereyra (B358) 2008; 197
Checkley (B80) 2011; 410
Nakagawa (B329) 2004; 306
Li (B272) 2008; 68
Rerks-Ngarm (B386) 2009; 361
Dinoso (B126) 2008; 47
Chun (B87) 1997; 94
Dobrowsky (B128) 2008; 82
Morel (B326) 2020; 8
Espert (B150) 2009; 4
Iliopoulou (B212) 2018; 25
Dufour (B138) 2018; 13
Qi (B374) 2011; 74
Rotger (B396) 2011; 121
Liang (B276) 1999; 402
Andersen (B16) 2016; 7
Weidberg (B467); 20
Guo (B185) 2013; 27
Sarkar (B404) 2007; 282
Deeks (B118) 2007; 27
Masiero (B303) 2009; 10
He (B197) 2003; 278
Ribeiro (B387) 2016; 540
Levine (B266) 2011; 469
Chawla (B79) 2018; 7
Hütter (B210) 2009; 360
Nakamoto (B331) 2012; 36
Bleul (B40) 1996; 382
Blanco (B35) 2001; 285
Punnonen (B371) 1989; 258
Tey (B438) 2012; 120
Chan (B75) 2007; 282
Roos (B394) 1992; 165
Zaunders (B492) 2011; 6
Doranz (B135) 1996; 85
Haworth (B196) 2017; 19
Nakatogawa (B333) 2009; 10
van’t Wout (B454) 1994; 94
Wong (B477) 1997; 278
Petrov (B361) 2013; 140
Li (B270) 2020; 11
Itakura (B213) 2008; 19
Kohda (
References_xml – volume: 17
  start-page: 145
  year: 2010
  ident: B393
  article-title: Role of FK506-binding protein 51 in the control of apoptosis of irradiated melanoma cells.
  publication-title: Cell Death Differ.
  doi: 10.1038/cdd.2009.115
  contributor:
    fullname: Romano
– volume: 74
  start-page: 408
  year: 2001
  ident: B478
  article-title: Cloning, expression patterns, and chromosome localization of three human and two mouse homologues of GABA(A) receptor-associated protein.
  publication-title: Genomics
  doi: 10.1006/geno.2001.6555
  contributor:
    fullname: Xin
– volume: 14
  start-page: 24
  year: 2015
  ident: B11
  article-title: CCR5Δ32 mutation and HIV infection: basis for curative HIV therapy.
  publication-title: Curr. Opin. Virol.
  doi: 10.1016/j.coviro.2015.06.007
  contributor:
    fullname: Allers
– volume: 38
  start-page: 31
  year: 2019
  ident: B288
  article-title: Elite controllers and lessons learned for HIV-1 cure.
  publication-title: Curr. Opin. Virol.
  doi: 10.1016/j.coviro.2019.05.010
  contributor:
    fullname: Lopez-Galindez
– volume: 339
  start-page: 156
  year: 2013
  ident: B2
  article-title: Microglia: scapegoat, saboteur, or something else?
  publication-title: Science
  doi: 10.1126/science.1227901
  contributor:
    fullname: Aguzzi
– volume: 270
  start-page: 1811
  year: 1995
  ident: B91
  article-title: Identification of RANTES, MIP-1 alpha, and MIP-1 beta as the major HIV-suppressive factors produced by CD8+ T cells.
  publication-title: Science
  doi: 10.1126/science.270.5243.1811
  contributor:
    fullname: Cocchi
– volume: 9
  start-page: 853
  year: 2003
  ident: B429
  article-title: HIV-1 pathogenesis.
  publication-title: Nat. Med.
  doi: 10.1038/nm0703-853
  contributor:
    fullname: Stevenson
– volume: 110
  start-page: 9475
  year: 2013
  ident: B94
  article-title: HIV-1 exploits CCR5 conformational heterogeneity to escape inhibition by chemokines.
  publication-title: Proc. Natl. Acad. Sci. U.S.A.
  doi: 10.1073/pnas.1222205110
  contributor:
    fullname: Colin
– volume: 7
  year: 2011
  ident: B97
  article-title: HIV/AIDS, chronic diseases and globalisation.
  publication-title: Global Health
  doi: 10.1186/1744-8603-7-31
  contributor:
    fullname: Colvin
– volume: 441
  start-page: 880
  year: 2006
  ident: B246
  article-title: Loss of autophagy in the central nervous system causes neurodegeneration in mice.
  publication-title: Nature
  doi: 10.1038/nature04723
  contributor:
    fullname: Komatsu
– volume: 26
  start-page: 146
  year: 2016
  ident: B111
  article-title: Membrane dynamics associated with viral infection.
  publication-title: Rev. Med. Virol.
  doi: 10.1002/rmv.1872
  contributor:
    fullname: de Armas-Rillo
– volume: 11
  year: 2015
  ident: B423
  article-title: The depsipeptide romidepsin reverses HIV-1 latency in vivo.
  publication-title: PLoS Pathog.
  doi: 10.1371/journal.ppat.1005142
  contributor:
    fullname: Søgaard
– volume: 14
  year: 2018
  ident: B95
  article-title: CCR5 structural plasticity shapes HIV-1 phenotypic properties.
  publication-title: PLoS Pathog.
  doi: 10.1371/journal.ppat.1007432
  contributor:
    fullname: Colin
– volume: 152
  start-page: 458
  year: 1992
  ident: B17
  article-title: Cytoskeletal elements are required for the formation and maturation of autophagic vacuoles.
  publication-title: J. Cell. Physiol.
  doi: 10.1002/jcp.1041520304
  contributor:
    fullname: Aplin
– volume: 14
  year: 2017
  ident: B199
  article-title: HIV-1 persistence following extremely early initiation of antiretroviral therapy (ART) during acute HIV-1 infection: an observational study.
  publication-title: PLoS Med.
  doi: 10.1371/journal.pmed.1002417
  contributor:
    fullname: Henrich
– volume: 10
  start-page: 480
  year: 2009
  ident: B146
  article-title: Autophagy enhances the presentation of endogenous viral antigens on MHC class I molecules during HSV-1 infection.
  publication-title: Nat. Immunol.
  doi: 10.1038/ni.1720
  contributor:
    fullname: English
– volume: 191
  start-page: 155
  year: 2010
  ident: B125
  article-title: The dynamic interaction of AMBRA1 with the dynein motor complex regulates mammalian autophagy.
  publication-title: J. Cell Biol.
  doi: 10.1083/jcb.201002100
  contributor:
    fullname: Di Bartolomeo
– volume: 4
  year: 2009
  ident: B150
  article-title: Differential role of autophagy in CD4 T cells and macrophages during X4 and R5 HIV-1 infection.
  publication-title: PLoS One
  doi: 10.1371/journal.pone.0005787
  contributor:
    fullname: Espert
– volume: 489
  start-page: 25
  ident: B494
  article-title: NF-kappab facilitates oridonin-induced apoptosis and autophagy in HT1080 cells through a p53-mediated pathway.
  publication-title: Arch. Biochem. Biophys.
  doi: 10.1016/j.abb.2009.07.017
  contributor:
    fullname: Zhang
– volume: 125
  start-page: 1141
  year: 2012
  ident: B340
  article-title: NF-κB regulates protein quality control after heat stress through modulation of the BAG3-HspB8 complex.
  publication-title: J. Cell Sci.
  doi: 10.1242/jcs.091041
  contributor:
    fullname: Nivon
– volume: 59
  start-page: 59
  year: 1999
  ident: B4
  article-title: Cloning and genomic organization of beclin 1, a candidate tumor suppressor gene on chromosome 17q21.
  publication-title: Genomics
  doi: 10.1006/geno.1999.5851
  contributor:
    fullname: Aita
– volume: 116
  start-page: 2161
  year: 2006
  ident: B148
  article-title: Autophagy is involved in T cell death after binding of HIV-1 envelope proteins to CXCR4.
  publication-title: J. Clin. Invest.
  doi: 10.1172/jci26185
  contributor:
    fullname: Espert
– volume: 53
  start-page: 687
  year: 1968
  ident: B20
  article-title: Studies on cellular autophagocytosis. The formation of autophagic vacuoles in the liver after glucagon administration.
  publication-title: Am. J. Pathol.
  contributor:
    fullname: Arstila
– volume: 15
  start-page: 403
  year: 2014
  ident: B379
  article-title: Self and nonself: how autophagy targets mitochondria and bacteria.
  publication-title: Cell Host Microbe
  doi: 10.1016/j.chom.2014.03.012
  contributor:
    fullname: Randow
– volume: 122
  start-page: 103
  year: 2009
  ident: B26
  article-title: Moesin is required for HIV-1-induced CD4-CXCR4 interaction, F-actin redistribution, membrane fusion and viral infection in lymphocytes.
  publication-title: J. Cell Sci.
  doi: 10.1242/jcs.035873
  contributor:
    fullname: Barrero-Villar
– volume: 2
  start-page: 1244
  year: 1996
  ident: B92
  article-title: The V3 domain of the HIV-1 gp120 envelope glycoprotein is critical for chemokine-mediated blockade of infection.
  publication-title: Nat. Med.
  doi: 10.1038/nm1196-1244
  contributor:
    fullname: Cocchi
– volume: 5
  start-page: 766
  year: 2009
  ident: B341
  article-title: Autophagy activation by NFkappaB is essential for cell survival after heat shock.
  publication-title: Autophagy
  doi: 10.4161/auto.8788
  contributor:
    fullname: Nivon
– volume: 10
  start-page: 65
  year: 2016
  ident: B364
  article-title: HIV prevention: the key to ending AIDS by 2030.
  publication-title: Open AIDS J.
  doi: 10.2174/1874613601610010065
  contributor:
    fullname: Poku
– volume: 15
  start-page: 2165
  year: 2019
  ident: B437
  article-title: ATG2 regulation of phagophore expansion at mitochondria-associated ER membranes.
  publication-title: Autophagy
  doi: 10.1080/15548627.2019.1666594
  contributor:
    fullname: Tang
– volume: 32
  start-page: 329
  year: 2010
  ident: B366
  article-title: Delivery of cytosolic components by autophagic adaptor protein p62 endows autophagosomes with unique antimicrobial properties.
  publication-title: Immunity
  doi: 10.1016/j.immuni.2010.02.009
  contributor:
    fullname: Ponpuak
– volume: 25
  start-page: 1782
  year: 2017
  ident: B479
  article-title: CRISPR/Cas9-mediated CCR5 ablation in human hematopoietic stem/progenitor cells confers HIV-1 resistance in vivo.
  publication-title: Mol. Ther.
  doi: 10.1016/j.ymthe.2017.04.027
  contributor:
    fullname: Xu
– volume: 9
  year: 2020
  ident: B5
  article-title: Modulation of mTORC1 signaling pathway by HIV-1.
  publication-title: Cells
  doi: 10.3390/cells9051090
  contributor:
    fullname: Akbay
– volume: 76
  start-page: 804
  year: 2004
  ident: B36
  article-title: R5 HIV gp120-mediated cellular contacts induce the death of single CCR5-expressing CD4 T cells by a gp41-dependent mechanism.
  publication-title: J. Leukoc. Biol.
  doi: 10.1189/jlb.0204100
  contributor:
    fullname: Blanco
– volume: 181
  start-page: 497
  year: 2008
  ident: B192
  article-title: FIP200, a ULK-interacting protein, is required for autophagosome formation in mammalian cells.
  publication-title: J. Cell Biol.
  doi: 10.1083/jcb.200712064
  contributor:
    fullname: Hara
– volume: 60
  start-page: 55
  year: 1999
  ident: B328
  article-title: Processing and routage of HIV glycoproteins by furin to the cell surface.
  publication-title: Virus Res.
  doi: 10.1016/s0168-1702(99)00002-7
  contributor:
    fullname: Moulard
– volume: 430
  start-page: 1696
  year: 2018
  ident: B457
  article-title: Autophagy during early virus-host cell interactions.
  publication-title: J. Mol. Biol.
  doi: 10.1016/j.jmb.2018.04.018
  contributor:
    fullname: Viret
– volume: 381
  start-page: 667
  year: 1996
  ident: B137
  article-title: HIV-1 entry into CD4+ cells is mediated by the chemokine receptor CC-CKR-5.
  publication-title: Nature
  doi: 10.1038/381667a0
  contributor:
    fullname: Dragic
– volume: 19
  start-page: 45
  year: 2019
  ident: B108
  article-title: Functional cure of HIV: the scale of the challenge.
  publication-title: Nat. Rev. Immunol.
  doi: 10.1038/s41577-018-0085-4
  contributor:
    fullname: Davenport
– volume: 66
  start-page: 6777
  year: 1992
  ident: B112
  article-title: Minimal requirements for the human immunodeficiency virus type 1 V3 domain to support the syncytium-inducing phenotype: analysis by single amino acid substitution.
  publication-title: J. Virol.
  doi: 10.1128/jvi.66.11.6777-6780.1992
  contributor:
    fullname: De Jong
– volume: 7
  start-page: 183
  year: 2018
  ident: B79
  article-title: A review of long-term toxicity of antiretroviral treatment regimens and implications for an aging population.
  publication-title: Infect. Dis. Ther.
  doi: 10.1007/s40121-018-0201-6
  contributor:
    fullname: Chawla
– volume: 269
  start-page: 12240
  year: 1994
  ident: B116
  article-title: The convertases furin and PC1 can both cleave the human immunodeficiency virus (HIV)-1 envelope glycoprotein gp160 into gp120 (HIV-1 SU) and gp41 (HIV-I TM).
  publication-title: J. Biol. Chem.
  doi: 10.1016/s0021-9258(17)32707-2
  contributor:
    fullname: Decroly
– volume: 13
  year: 2020
  ident: B123
  article-title: Editing of the TRIM5 gene decreases the permissiveness of human T lymphocytic cells to HIV-1.
  publication-title: Viruses
  doi: 10.3390/v13010024
  contributor:
    fullname: Désaulniers
– volume: 277
  start-page: 18619
  year: 2002
  ident: B252
  article-title: Formation of the approximately 350-kDa Apg12-Apg5.Apg16 multimeric complex, mediated by Apg16 oligomerization, is essential for autophagy in yeast.
  publication-title: J. Biol. Chem.
  doi: 10.1074/jbc.m111889200
  contributor:
    fullname: Kuma
– volume: 24
  start-page: 833
  year: 1999
  ident: B440
  article-title: A mouse serine/threonine kinase homologous to C. elegans UNC51 functions in parallel fiber formation of cerebellar granule neurons.
  publication-title: Neuron
  doi: 10.1016/s0896-6273(00)81031-4
  contributor:
    fullname: Tomoda
– volume: 4
  start-page: 998
  year: 2008
  ident: B122
  article-title: HIV-1 gp41 fusogenic function triggers autophagy in uninfected cells.
  publication-title: Autophagy
  doi: 10.4161/auto.6880
  contributor:
    fullname: Denizot
– year: 2020
  ident: B107
  article-title: HIV-1 Env induces pexophagy and an oxidative stress leading to uninfected CD4(+) T cell death.
  publication-title: Autophagy
  doi: 10.1080/15548627.2020.1831814
  contributor:
    fullname: Daussy
– volume: 20
  start-page: 1981
  year: 2009
  ident: B206
  article-title: Nutrient-dependent mTORC1 association with the ULK1-Atg13-FIP200 complex required for autophagy.
  publication-title: Mol. Biol. Cell
  doi: 10.1091/mbc.e08-12-1248
  contributor:
    fullname: Hosokawa
– volume: 7
  year: 2016
  ident: B63
  article-title: Methamphetamine potentiates HIV-1 gp120-mediated autophagy via Beclin-1 and Atg5/7 as a pro-survival response in astrocytes.
  publication-title: Cell Death Dis.
  doi: 10.1038/cddis.2016.317
  contributor:
    fullname: Cao
– volume: 29
  start-page: 1009
  year: 2008
  ident: B316
  article-title: Lytic granule loading of CD8+ T cells is required for HIV-infected cell elimination associated with immune control.
  publication-title: Immunity
  doi: 10.1016/j.immuni.2008.10.010
  contributor:
    fullname: Migueles
– volume: 25
  start-page: 1791
  year: 2015
  ident: B232
  article-title: WHAMM directs the Arp2/3 complex to the ER for autophagosome biogenesis through an actin comet tail mechanism.
  publication-title: Curr. Biol.
  doi: 10.1016/j.cub.2015.05.042
  contributor:
    fullname: Kast
– volume: 246
  start-page: 222
  year: 1998
  ident: B483
  article-title: Identification of mouse ULK1, a novel protein kinase structurally related to C. elegans UNC-51.
  publication-title: Biochem. Biophys. Res. Commun.
  doi: 10.1006/bbrc.1998.8546
  contributor:
    fullname: Yan
– volume: 12
  start-page: 1349
  year: 2003
  ident: B248
  article-title: The missing linker: an unexpected role for a histone deacetylase.
  publication-title: Mol. Cell.
  doi: 10.1016/S1097-2765(03)00498-2
  contributor:
    fullname: Kopito
– volume: 455
  start-page: 396
  year: 2008
  ident: B337
  article-title: Autophagy in thymic epithelium shapes the T-cell repertoire and is essential for tolerance.
  publication-title: Nature
  doi: 10.1038/nature07208
  contributor:
    fullname: Nedjic
– volume: 16
  start-page: 2337
  year: 2002
  ident: B76
  article-title: Low levels of co-receptor CCR5 are sufficient to permit HIV envelope-mediated fusion with resting CD4 T cells.
  publication-title: Aids
  doi: 10.1097/00002030-200211220-00016
  contributor:
    fullname: Chanel
– volume: 8
  year: 2019
  ident: B392
  article-title: New challenges of HIV-1 infection: how HIV-1 attacks and resides in the central nervous system.
  publication-title: Cells
  doi: 10.3390/cells8101245
  contributor:
    fullname: Rojas-Celis
– volume: 34
  start-page: 5352
  year: 2015
  ident: B391
  article-title: Beclin 1 regulates growth factor receptor signaling in breast cancer.
  publication-title: Oncogene
  doi: 10.1038/onc.2014.454
  contributor:
    fullname: Rohatgi
– volume: 111
  start-page: 136
  year: 2000
  ident: B354
  article-title: The effects of the 32-bp CCR-5 deletion on HIV transmission and HIV disease progression in individuals with haemophilia.
  publication-title: Br. J. Haematol.
  doi: 10.1111/j.1365-2141.2000.02325.x
  contributor:
    fullname: Pasi
– volume: 16
  start-page: 487
  ident: B165
  article-title: Pharmacological modulation of autophagy: therapeutic potential and persisting obstacles.
  publication-title: Nat. Rev. Drug Discov.
  doi: 10.1038/nrd.2017.22
  contributor:
    fullname: Galluzzi
– volume: 2
  year: 2012
  ident: B474
  article-title: HIV: cell binding and entry.
  publication-title: Cold Spring Harb. Perspect. Med.
  doi: 10.1101/cshperspect.a006866
  contributor:
    fullname: Wilen
– volume: 3
  start-page: 117
  year: 2007
  ident: B373
  article-title: Autophagy limits Listeria monocytogenes intracellular growth in the early phase of primary infection.
  publication-title: Autophagy
  doi: 10.4161/auto.3618
  contributor:
    fullname: Py
– volume: 15
  start-page: 60
  year: 2018
  ident: B102
  article-title: HIV persistence in adipose tissue reservoirs.
  publication-title: Curr. HIV/AIDS Rep.
  doi: 10.1007/s11904-018-0378-z
  contributor:
    fullname: Couturier
– volume: 36
  start-page: 658
  year: 2012
  ident: B331
  article-title: Virus recognition by Toll-7 activates antiviral autophagy in Drosophila.
  publication-title: Immunity
  doi: 10.1016/j.immuni.2012.03.003
  contributor:
    fullname: Nakamoto
– volume: 21
  start-page: 1043
  year: 2007
  ident: B260
  article-title: Replication-competent HIV strains infect HIV controllers despite undetectable viremia (ANRS EP36 study).
  publication-title: Aids
  doi: 10.1097/qad.0b013e3280d5a7ac
  contributor:
    fullname: Lamine
– volume: 1
  year: 2011
  ident: B421
  article-title: HIV latency.
  publication-title: Cold Spring Harb. Perspect. Med.
  doi: 10.1101/cshperspect.a007096
  contributor:
    fullname: Siliciano
– volume: 18
  start-page: 243
  year: 2002
  ident: B410
  article-title: Underestimation of HIV type 1 drug resistance mutations: results from the ENVA-2 genotyping proficiency program.
  publication-title: AIDS Res. Hum. Retroviruses
  doi: 10.1089/088922202753472801
  contributor:
    fullname: Schuurman
– volume: 32
  start-page: 373
  year: 2010
  ident: B167
  article-title: MHC presentation via autophagy and how viruses escape from it.
  publication-title: Semin. Immunopathol.
  doi: 10.1007/s00281-010-0227-7
  contributor:
    fullname: Gannage
– volume: 441
  start-page: 885
  year: 2006
  ident: B191
  article-title: Suppression of basal autophagy in neural cells causes neurodegenerative disease in mice.
  publication-title: Nature
  doi: 10.1038/nature04724
  contributor:
    fullname: Hara
– volume: 91
  year: 2017
  ident: B433
  article-title: Imaging HIV-1 genomic DNA from entry through productive infection.
  publication-title: J. Virol.
  doi: 10.1128/JVI.00034-17
  contributor:
    fullname: Stultz
– volume: 2
  year: 2009
  ident: B284
  article-title: HIV infection of T cells: actin-in and actin-out.
  publication-title: Sci. Signal.
  doi: 10.1126/scisignal.266pe23
  contributor:
    fullname: Liu
– volume: 10
  start-page: 507
  year: 2009
  ident: B303
  article-title: Autophagy is required to maintain muscle mass.
  publication-title: Cell Metab.
  doi: 10.1016/j.cmet.2009.10.008
  contributor:
    fullname: Masiero
– volume: 22
  start-page: 124
  year: 2010
  ident: B487
  article-title: Mammalian autophagy: core molecular machinery and signaling regulation.
  publication-title: Curr. Opin. Cell Biol.
  doi: 10.1016/j.ceb.2009.11.014
  contributor:
    fullname: Yang
– volume: 26
  start-page: 79
  year: 2007
  ident: B407
  article-title: Antigen-loading compartments for major histocompatibility complex class II molecules continuously receive input from autophagosomes.
  publication-title: Immunity
  doi: 10.1016/j.immuni.2006.10.018
  contributor:
    fullname: Schmid
– volume: 16
  start-page: 349
  year: 2013
  ident: B61
  article-title: Inhibition of human immunodeficiency virus type-1 through autophagy.
  publication-title: Curr. Opin. Microbiol.
  doi: 10.1016/j.mib.2013.05.006
  contributor:
    fullname: Campbell
– volume: 36
  start-page: 585
  year: 2004
  ident: B382
  article-title: Inhibition of mTOR induces autophagy and reduces toxicity of polyglutamine expansions in fly and mouse models of Huntington disease.
  publication-title: Nat. Genet.
  doi: 10.1038/ng1362
  contributor:
    fullname: Ravikumar
– volume: 281
  start-page: 11374
  year: 2006
  ident: B33
  article-title: Autophagy controls Salmonella infection in response to damage to the Salmonella-containing vacuole.
  publication-title: J. Biol. Chem.
  doi: 10.1074/jbc.m509157200
  contributor:
    fullname: Birmingham
– volume: 27
  start-page: 1447
  year: 2013
  ident: B185
  article-title: Autophagy suppresses progression of K-ras-induced lung tumors to oncocytomas and maintains lipid homeostasis.
  publication-title: Genes Dev.
  doi: 10.1101/gad.219642.113
  contributor:
    fullname: Guo
– volume: 172
  start-page: 454
  year: 2008
  ident: B243
  article-title: Inhibition of autophagy prevents hippocampal pyramidal neuron death after hypoxic-ischemic injury.
  publication-title: Am. J. Pathol.
  doi: 10.2353/ajpath.2008.070876
  contributor:
    fullname: Koike
– volume: 9
  year: 2018
  ident: B96
  article-title: Restriction factors: from intrinsic viral restriction to shaping cellular immunity against HIV-1.
  publication-title: Front. Immunol.
  doi: 10.3389/fimmu.2018.02876
  contributor:
    fullname: Colomer-Lluch
– volume: 405
  start-page: 68
  year: 1997
  ident: B115
  article-title: Comparative functional role of PC7 and furin in the processing of the HIV envelope glycoprotein gp160.
  publication-title: FEBS Lett.
  doi: 10.1016/s0014-5793(97)00156-7
  contributor:
    fullname: Decroly
– volume: 18
  start-page: 291
  year: 2008
  ident: B449
  article-title: HDAC6: a key regulator of cytoskeleton, cell migration and cell-cell interactions.
  publication-title: Trends Cell Biol.
  doi: 10.1016/j.tcb.2008.04.003
  contributor:
    fullname: Valenzuela-Fernandez
– volume: 541
  start-page: 412
  year: 2017
  ident: B427
  article-title: PLA2G16 represents a switch between entry and clearance of Picornaviridae.
  publication-title: Nature
  doi: 10.1038/nature21032
  contributor:
    fullname: Staring
– volume: 3
  year: 2012
  ident: B42
  article-title: Macroautophagy regulation during HIV-1 infection of CD4+ T cells and macrophages.
  publication-title: Front. Immunol.
  doi: 10.3389/fimmu.2012.00097
  contributor:
    fullname: Borel
– volume: 34
  start-page: 2201
  year: 2020
  ident: B323
  article-title: Resistance profile of HIV-1 quasispecies in patients under treatment failure using single molecule, real-time sequencing.
  publication-title: Aids
  doi: 10.1097/qad.0000000000002697
  contributor:
    fullname: Monaco
– volume: 258
  start-page: 269
  year: 1989
  ident: B371
  article-title: Intramembrane particles and filipin labelling on the membranes of autophagic vacuoles and lysosomes in mouse liver.
  publication-title: Cell Tissue Res.
  doi: 10.1007/BF00239447
  contributor:
    fullname: Punnonen
– volume: 110
  start-page: 1923
  ident: B139
  article-title: Studies on the mechanisms of autophagy: formation of the autophagic vacuole.
  publication-title: J. Cell Biol.
  doi: 10.1083/jcb.110.6.1923
  contributor:
    fullname: Dunn
– volume: 16
  start-page: 4606
  year: 1997
  ident: B18
  article-title: Molecular mechanism of desensitization of the chemokine receptor CCR-5: receptor signaling and internalization are dissociable from its role as an HIV-1 co-receptor.
  publication-title: EMBO J.
  doi: 10.1093/emboj/16.15.4606
  contributor:
    fullname: Aramori
– volume: 13
  start-page: 723
  year: 2013
  ident: B30
  article-title: Intestinal epithelial autophagy is essential for host defense against invasive bacteria.
  publication-title: Cell Host Microbe
  doi: 10.1016/j.chom.2013.05.004
  contributor:
    fullname: Benjamin
– volume: 25
  start-page: 460
  year: 2011
  ident: B184
  article-title: Activated Ras requires autophagy to maintain oxidative metabolism and tumorigenesis.
  publication-title: Genes Dev.
  doi: 10.1101/gad.2016311
  contributor:
    fullname: Guo
– volume: 231
  start-page: 382
  year: 1986
  ident: B307
  article-title: Binding of HTLV-III/LAV to T4+ T cells by a complex of the 110K viral protein and the T4 molecule.
  publication-title: Science
  doi: 10.1126/science.3001934
  contributor:
    fullname: McDougal
– volume: 202
  start-page: 331
  year: 2013
  ident: B241
  article-title: Membrane remodeling by the PX-BAR protein SNX18 promotes autophagosome formation.
  publication-title: J. Cell Biol.
  doi: 10.1083/jcb.201205129
  contributor:
    fullname: Knævelsrud
– volume: 92
  year: 2018
  ident: B377
  article-title: HIV-1 R5 macrophage-tropic envelope glycoprotein trimers bind CD4 with high affinity, while the CD4 binding site on non-macrophage-tropic, T-tropic R5 envelopes is occluded.
  publication-title: J. Virol.
  doi: 10.1128/JVI.00841-17
  contributor:
    fullname: Quitadamo
– volume: 286
  start-page: 12554
  year: 2011
  ident: B460
  article-title: LIM kinase 1 modulates cortical actin and CXCR4 cycling and is activated by HIV-1 to initiate viral infection.
  publication-title: J. Biol. Chem.
  doi: 10.1074/jbc.m110.182238
  contributor:
    fullname: Vorster
– volume: 11
  year: 2020
  ident: B456
  article-title: Life, death, and autophagy in cancer: NF-κB turns up everywhere.
  publication-title: Cell Death Dis.
  doi: 10.1038/s41419-020-2399-y
  contributor:
    fullname: Verzella
– year: 2015
  ident: B444
  publication-title: Understanding Fast-Track: Accelerating Action To End the AIDS Epidemic by 2030.
– volume: 282
  start-page: 24131
  year: 2007
  ident: B353
  article-title: p62/SQSTM1 binds directly to Atg8/LC3 to facilitate degradation of ubiquitinated protein aggregates by autophagy.
  publication-title: J. Biol. Chem.
  doi: 10.1074/jbc.m702824200
  contributor:
    fullname: Pankiv
– volume: 16
  year: 2019
  ident: B292
  article-title: The autophagy protein ATG9A promotes HIV-1 infectivity.
  publication-title: Retrovirology
  doi: 10.1186/s12977-019-0480-3
  contributor:
    fullname: Mailler
– volume: 2
  start-page: 255
  year: 2015
  ident: B436
  article-title: Decreased BECN1 mRNA expression in human breast cancer is associated with estrogen receptor-negative subtypes and poor prognosis.
  publication-title: EBioMedicine
  doi: 10.1016/j.ebiom.2015.01.008
  contributor:
    fullname: Tang
– volume: 116
  start-page: 1679
  year: 2003
  ident: B317
  article-title: Mouse Apg16L, a novel WD-repeat protein, targets to the autophagic isolation membrane with the Apg12-Apg5 conjugate.
  publication-title: J. Cell Sci.
  doi: 10.1242/jcs.00381
  contributor:
    fullname: Mizushima
– volume: 27
  start-page: 421
  year: 2002
  ident: B319
  article-title: Autophagosome formation in mammalian cells.
  publication-title: Cell Struct. Funct.
  doi: 10.1247/csf.27.421
  contributor:
    fullname: Mizushima
– volume: 33
  start-page: 1250
  year: 2003
  ident: B338
  article-title: Major histocompatibility complex class II-restricted presentation of a cytosolic antigen by autophagy.
  publication-title: Eur. J. Immunol.
  doi: 10.1002/eji.200323730
  contributor:
    fullname: Nimmerjahn
– volume: 11
  start-page: S17
  year: 1997
  ident: B356
  article-title: Dynamics of HIV-1 and CD4+ lymphocytes in vivo.
  publication-title: Aids
  contributor:
    fullname: Perelson
– volume: 125
  start-page: 5
  year: 2015
  ident: B446
  article-title: Pharmacologic agents targeting autophagy.
  publication-title: J. Clin. Invest.
  doi: 10.1172/jci73937
  contributor:
    fullname: Vakifahmetoglu-Norberg
– volume: 121
  start-page: 2391
  year: 2011
  ident: B396
  article-title: Comparative transcriptomics of extreme phenotypes of human HIV-1 infection and SIV infection in sooty mangabey and rhesus macaque.
  publication-title: J. Clin. Invest.
  doi: 10.1172/jci45235
  contributor:
    fullname: Rotger
– volume: 535
  start-page: 556
  year: 2016
  ident: B406
  article-title: HIV-1 antibody 3BNC117 suppresses viral rebound in humans during treatment interruption.
  publication-title: Nature
  doi: 10.1038/nature18929
  contributor:
    fullname: Scheid
– volume: 3
  start-page: 32
  year: 2007
  ident: B149
  article-title: Autophagy and CD4+ T lymphocyte destruction by HIV-1.
  publication-title: Autophagy
  doi: 10.4161/auto.3275
  contributor:
    fullname: Espert
– volume: 79
  start-page: 1889
  year: 1982
  ident: B412
  article-title: 3-Methyladenine: specific inhibitor of autophagic/lysosomal protein degradation in isolated rat hepatocytes.
  publication-title: Proc. Natl. Acad. Sci. U.S.A.
  doi: 10.1073/pnas.79.6.1889
  contributor:
    fullname: Seglen
– volume: 11
  start-page: 176
  year: 2011
  ident: B12
  article-title: DCs and NK cells: critical effectors in the immune response to HIV-1.
  publication-title: Nat. Rev. Immunol.
  doi: 10.1038/nri2935
  contributor:
    fullname: Altfeld
– volume: 89
  start-page: 615
  year: 2015
  ident: B398
  article-title: Autophagy restricts HIV-1 infection by selectively degrading Tat in CD4+ T lymphocytes.
  publication-title: J. Virol.
  doi: 10.1128/jvi.02174-14
  contributor:
    fullname: Sagnier
– volume: 28
  start-page: 149
  year: 2014
  ident: B187
  article-title: A systematic review of definitions of extreme phenotypes of HIV control and progression.
  publication-title: Aids
  doi: 10.1097/qad.0000000000000049
  contributor:
    fullname: Gurdasani
– volume: 4
  start-page: 1
  year: 2014
  ident: B311
  article-title: HIV entry: a game of hide-and-fuse?
  publication-title: Curr. Opin. Virol.
  doi: 10.1016/j.coviro.2013.09.004
  contributor:
    fullname: Melikyan
– volume: 307
  start-page: 593
  year: 2005
  ident: B351
  article-title: Endogenous MHC class II processing of a viral nuclear antigen after autophagy.
  publication-title: Science
  doi: 10.1126/science.1104904
  contributor:
    fullname: Paludan
– volume: 12
  year: 2015
  ident: B450
  article-title: The HDAC6/APOBEC3G complex regulates HIV-1 infectiveness by inducing Vif autophagic degradation.
  publication-title: Retrovirology
  doi: 10.1186/s12977-015-0181-5
  contributor:
    fullname: Valera
– volume: 80
  start-page: 125
  ident: B468
  article-title: Biogenesis and cargo selectivity of autophagosomes.
  publication-title: Annu. Rev. Biochem.
  doi: 10.1146/annurev-biochem-052709-094552
  contributor:
    fullname: Weidberg
– volume: 282
  start-page: 25464
  year: 2007
  ident: B75
  article-title: siRNA screening of the kinome identifies ULK1 as a multidomain modulator of autophagy.
  publication-title: J. Biol. Chem.
  doi: 10.1074/jbc.m703663200
  contributor:
    fullname: Chan
– volume: 8
  ident: B59
  article-title: Toll-like receptor 8 ligands activate a vitamin D mediated autophagic response that inhibits human immunodeficiency virus type 1.
  publication-title: PLoS Pathog.
  doi: 10.1371/journal.ppat.1003017
  contributor:
    fullname: Campbell
– volume: 1
  year: 2015
  ident: B117
  article-title: HIV infection.
  publication-title: Nat. Rev. Dis. Primers
  doi: 10.1038/nrdp.2015.35
  contributor:
    fullname: Deeks
– volume: 8
  start-page: 1590
  year: 2012
  ident: B1
  article-title: The actin cytoskeleton participates in the early events of autophagosome formation upon starvation induced autophagy.
  publication-title: Autophagy
  doi: 10.4161/auto.21459
  contributor:
    fullname: Aguilera
– volume: 283
  start-page: 23972
  year: 2008
  ident: B344
  article-title: The Atg18-Atg2 complex is recruited to autophagic membranes via phosphatidylinositol 3-phosphate and exerts an essential function.
  publication-title: J. Biol. Chem.
  doi: 10.1074/jbc.m803180200
  contributor:
    fullname: Obara
– volume: 23
  start-page: 690
  ident: B228
  article-title: Excision of HIV-1 DNA by gene editing: a proof-of-concept in vivo study.
  publication-title: Gene Ther.
  doi: 10.1038/gt.2016.41
  contributor:
    fullname: Kaminski
– volume: 7
  start-page: 1448
  year: 2011
  ident: B306
  article-title: Resveratrol-mediated autophagy requires WIPI-1-regulated LC3 lipidation in the absence of induced phagophore formation.
  publication-title: Autophagy
  doi: 10.4161/auto.7.12.17802
  contributor:
    fullname: Mauthe
– volume: 301
  start-page: 1387
  year: 2003
  ident: B310
  article-title: Autophagy genes are essential for dauer development and life-span extension in C. elegans.
  publication-title: Science
  doi: 10.1126/science.1087782
  contributor:
    fullname: Meléndez
– volume: 33
  start-page: 303
  year: 2014
  ident: B309
  article-title: Challenging the paradigm: anthropological perspectives on HIV as a chronic disease.
  publication-title: Med. Anthropol.
  doi: 10.1080/01459740.2014.892483
  contributor:
    fullname: McGrath
– volume: 307
  start-page: 727
  year: 2005
  ident: B346
  article-title: Escape of intracellular Shigella from autophagy.
  publication-title: Science
  doi: 10.1126/science.1106036
  contributor:
    fullname: Ogawa
– volume: 5
  year: 2010
  ident: B66
  article-title: Host and viral genetic correlates of clinical definitions of HIV-1 disease progression.
  publication-title: PLoS One
  doi: 10.1371/journal.pone.0011079
  contributor:
    fullname: Casado
– volume: 331
  start-page: 456
  year: 2011
  ident: B143
  article-title: Phosphorylation of ULK1 (hATG1) by AMP-activated protein kinase connects energy sensing to mitophagy.
  publication-title: Science
  doi: 10.1126/science.1196371
  contributor:
    fullname: Egan
– volume: 9
  year: 2012
  ident: B236
  article-title: Dual role of autophagy in HIV-1 replication and pathogenesis.
  publication-title: AIDS Res. Ther.
  doi: 10.1186/1742-6405-9-16
  contributor:
    fullname: Killian
– volume: 65
  start-page: 3134
  year: 2008
  ident: B171
  article-title: Role of HIV Gp41 mediated fusion/hemifusion in bystander apoptosis.
  publication-title: Cell Mol. Life Sci.
  doi: 10.1007/s00018-008-8147-6
  contributor:
    fullname: Garg
– volume: 477
  start-page: 123
  year: 2000
  ident: B38
  article-title: The HIV-1 gp120 inhibits the binding of adenosine deaminase to CD26 by a mechanism modulated by CD4 and CXCR4 expression.
  publication-title: FEBS Lett.
  doi: 10.1016/s0014-5793(00)01751-8
  contributor:
    fullname: Blanco
– volume: 15
  start-page: 2091
  year: 2019
  ident: B347
  article-title: Autophagy protein ATG5 regulates CD36 expression and anti-tumor MHC class II antigen presentation in dendritic cells.
  publication-title: Autophagy
  doi: 10.1080/15548627.2019.1596493
  contributor:
    fullname: Oh
– volume: 73
  start-page: 2752
  year: 1999
  ident: B134
  article-title: Identification of CXCR4 domains that support coreceptor and chemokine receptor functions.
  publication-title: J. Virol.
  doi: 10.1128/jvi.73.4.2752-2761.1999
  contributor:
    fullname: Doranz
– volume: 9
  start-page: 838
  year: 2007
  ident: B218
  article-title: Filamin-A regulates actin-dependent clustering of HIV receptors.
  publication-title: Nat. Cell Biol.
  doi: 10.1038/ncb1610
  contributor:
    fullname: Jimenez-Baranda
– volume: 89
  start-page: 1024
  year: 2015
  ident: B144
  article-title: HIV-1 and morphine regulation of autophagy in microglia: limited interactions in the context of HIV-1 infection and opioid abuse.
  publication-title: J. Virol.
  doi: 10.1128/jvi.02022-14
  contributor:
    fullname: El-Hage
– volume: 565
  start-page: 318
  year: 2019
  ident: B416
  article-title: Structural basis of coreceptor recognition by HIV-1 envelope spike.
  publication-title: Nature
  doi: 10.1038/s41586-018-0804-9
  contributor:
    fullname: Shaik
– volume: 145
  start-page: 1636
  year: 2020
  ident: B408
  article-title: Characterization of the furin cleavage motif for HIV-1 trimeric envelope glycoprotein by intact LC-MS analysis.
  publication-title: Analyst
  doi: 10.1039/c9an02098e
  contributor:
    fullname: Schneck
– volume: 141
  start-page: 656
  year: 2010
  ident: B189
  article-title: Mitochondria supply membranes for autophagosome biogenesis during starvation.
  publication-title: Cell
  doi: 10.1016/j.cell.2010.04.009
  contributor:
    fullname: Hailey
– volume: 22
  start-page: 695
  year: 2008
  ident: B500
  article-title: Human immunodeficiency virus type-1 infection inhibits autophagy.
  publication-title: Aids
  doi: 10.1097/qad.0b013e3282f4a836
  contributor:
    fullname: Zhou
– volume: 22
  start-page: 1167
  year: 2011
  ident: B217
  article-title: Heat shock protein 90-mediated inactivation of nuclear factor-κB switches autophagy to apoptosis through becn1 transcriptional inhibition in selenite-induced NB4 cells.
  publication-title: Mol. Biol. Cell
  doi: 10.1091/mbc.e10-10-0860
  contributor:
    fullname: Jiang
– volume: 8
  year: 2017
  ident: B489
  article-title: Is trehalose an autophagic inducer? Unraveling the roles of non-reducing disaccharides on autophagic flux and alpha-synuclein aggregation.
  publication-title: Cell Death Dis.
  doi: 10.1038/cddis.2017.501
  contributor:
    fullname: Yoon
– volume: 4
  start-page: 352
  year: 2009
  ident: B235
  article-title: Genetic and antigenic features of the transmitted virus.
  publication-title: Curr. Opin. HIV AIDS
  doi: 10.1097/coh.0b013e32832d9fef
  contributor:
    fullname: Keele
– volume: 8
  year: 2020
  ident: B326
  article-title: Endoplasmic reticulum membrane and contact site dynamics in autophagy regulation and stress response.
  publication-title: Front. Cell. Dev. Biol.
  doi: 10.3389/fcell.2020.00343
  contributor:
    fullname: Morel
– volume: 6
  year: 2010
  ident: B397
  article-title: Genome-wide mRNA expression correlates of viral control in CD4+ T-cells from HIV-1-infected individuals.
  publication-title: PLoS Pathog.
  doi: 10.1371/journal.ppat.1000781
  contributor:
    fullname: Rotger
– volume: 333
  start-page: 228
  year: 2011
  ident: B473
  article-title: Phosphorylation of the autophagy receptor optineurin restricts Salmonella growth.
  publication-title: Science
  doi: 10.1126/science.1205405
  contributor:
    fullname: Wild
– volume: 10
  start-page: 2387
  ident: B295
  article-title: TRIM proteins regulate autophagy: TRIM5 is a selective autophagy receptor mediating HIV-1 restriction.
  publication-title: Autophagy
  doi: 10.4161/15548627.2014.984278
  contributor:
    fullname: Mandell
– volume: 319
  start-page: 921
  year: 2008
  ident: B47
  article-title: Identification of host proteins required for HIV infection through a functional genomic screen.
  publication-title: Science
  doi: 10.1126/science.1152725
  contributor:
    fullname: Brass
– volume: 92
  start-page: 247
  year: 2011
  ident: B367
  article-title: Human immunodeficiency virus type 1 long-term non-progressors: the viral, genetic and immunological basis for disease non-progression.
  publication-title: J. Gen. Virol.
  doi: 10.1099/vir.0.027102-0
  contributor:
    fullname: Poropatich
– volume: 9
  year: 2012
  ident: B142
  article-title: Inhibition of HIV-1 replication with stable RNAi-mediated knockdown of autophagy factors.
  publication-title: Virol. J.
  doi: 10.1186/1743-422x-9-69
  contributor:
    fullname: Eekels
– volume: 305
  start-page: 318
  year: 2003
  ident: B37
  article-title: Cell-surface-expressed HIV-1 envelope induces the death of CD4 T cells during GP41-mediated hemifusion-like events.
  publication-title: Virology
  doi: 10.1006/viro.2002.1764
  contributor:
    fullname: Blanco
– volume: 119
  start-page: 753
  year: 2004
  ident: B188
  article-title: Autophagy is a defense mechanism inhibiting BCG and Mycobacterium tuberculosis survival in infected macrophages.
  publication-title: Cell
  doi: 10.1016/j.cell.2004.11.038
  contributor:
    fullname: Gutierrez
– volume: 4
  start-page: 773
  year: 2014
  ident: B268
  article-title: Autophagy inhibition improves chemosensitivity in BRAF(V600E) brain tumors.
  publication-title: Cancer Discov.
  doi: 10.1158/2159-8290.cd-14-0049
  contributor:
    fullname: Levy
– volume: 203
  start-page: 1647
  year: 2011
  ident: B499
  article-title: Autophagy is increased in postmortem brains of persons with HIV-1-associated encephalitis.
  publication-title: J. Infect. Dis.
  doi: 10.1093/infdis/jir163
  contributor:
    fullname: Zhou
– volume: 20
  start-page: 425
  year: 2014
  ident: B53
  article-title: New ex vivo approaches distinguish effective and ineffective single agents for reversing HIV-1 latency in vivo.
  publication-title: Nat. Med.
  doi: 10.1038/nm.3489
  contributor:
    fullname: Bullen
– volume: 196
  start-page: 1768
  year: 2016
  ident: B221
  article-title: HIV-1 Env glycoprotein phenotype along with immune activation determines CD4 T cell loss in HIV patients.
  publication-title: J. Immunol.
  doi: 10.4049/jimmunol.1501588
  contributor:
    fullname: Joshi
– volume: 12
  start-page: 783
  year: 1996
  ident: B251
  article-title: Generation of lymphocyte cell lines coexpressing CD4 and wild-type or mutant HIV type 1 glycoproteins: implications for HIV type 1 Env-induced cell lysis.
  publication-title: AIDS Res. Hum. Retroviruses
  doi: 10.1089/aid.1996.12.783
  contributor:
    fullname: Krüger
– volume: 47
  start-page: 102
  year: 2008
  ident: B126
  article-title: A comparison of viral loads between HIV-1-infected elite suppressors and individuals who receive suppressive highly active antiretroviral therapy.
  publication-title: Clin. Infect. Dis.
  doi: 10.1086/588791
  contributor:
    fullname: Dinoso
– volume: 282
  start-page: 5641
  year: 2007
  ident: B404
  article-title: Trehalose, a novel mTOR-independent autophagy enhancer, accelerates the clearance of mutant huntingtin and alpha-synuclein.
  publication-title: J. Biol. Chem.
  doi: 10.1074/jbc.m609532200
  contributor:
    fullname: Sarkar
– volume: 14
  start-page: 101
  year: 2017
  ident: B424
  article-title: Mechanisms of HIV-1 control.
  publication-title: Curr. HIV/AIDS Rep.
  doi: 10.1007/s11904-017-0357-9
  contributor:
    fullname: Soliman
– volume: 6
  start-page: 506
  year: 2010
  ident: B365
  article-title: Mammalian Atg18 (WIPI2) localizes to omegasome-anchored phagophores and positively regulates LC3 lipidation.
  publication-title: Autophagy
  doi: 10.4161/auto.6.4.11863
  contributor:
    fullname: Polson
– volume: 111
  start-page: 308
  year: 2019
  ident: B7
  article-title: HIV-1 Vpr inhibits autophagy during the early steps of infection of CD4 T cells.
  publication-title: Biol. Cell
  doi: 10.1111/boc.201900071
  contributor:
    fullname: Alfaisal
– volume: 17
  start-page: 122
  year: 2016
  ident: B89
  article-title: HIV-1 gp120: a target for therapeutics and vaccine design.
  publication-title: Curr. Drug Targets
  doi: 10.2174/1389450116666150825120735
  contributor:
    fullname: Cicala
– volume: 186
  start-page: 1793
  year: 1997
  ident: B110
  article-title: Signal transduction due to HIV-1 envelope interactions with chemokine receptors CXCR4 or CCR5.
  publication-title: J. Exp. Med.
  doi: 10.1084/jem.186.10.1793
  contributor:
    fullname: Davis
– volume: 3
  start-page: 591
  year: 2007
  ident: B339
  article-title: Aberrant membranes and double-membrane structures accumulate in the axons of Atg5-null Purkinje cells before neuronal death.
  publication-title: Autophagy
  doi: 10.4161/auto.4964
  contributor:
    fullname: Nishiyama
– volume: 58
  start-page: 43
  year: 2001
  ident: B90
  article-title: HIV-1 receptors and cell tropism.
  publication-title: Br. Med. Bull.
  doi: 10.1093/bmb/58.1.43
  contributor:
    fullname: Clapham
– volume: 7
  year: 2016
  ident: B16
  article-title: Coupling of HIV-1 antigen to the selective autophagy receptor SQSTM1/p62 promotes T-Cell-mediated immunity.
  publication-title: Front. Immunol.
  doi: 10.3389/fimmu.2016.00167
  contributor:
    fullname: Andersen
– volume: 280
  start-page: 40282
  year: 2005
  ident: B214
  article-title: HDAC6 and microtubules are required for autophagic degradation of aggregated huntingtin.
  publication-title: J. Biol. Chem.
  doi: 10.1074/jbc.m508786200
  contributor:
    fullname: Iwata
– volume: 9
  start-page: 1308
  year: 2013
  ident: B70
  article-title: Trehalose delays the progression of amyotrophic lateral sclerosis by enhancing autophagy in motoneurons.
  publication-title: Autophagy
  doi: 10.4161/auto.25188
  contributor:
    fullname: Castillo
– volume: 14
  start-page: 287
  year: 2019
  ident: B287
  article-title: HIV long-term non-progressors elite controllers: an interplay between host, immune and viral factors.
  publication-title: Future Med.
  doi: 10.2217/fvl-2018-0207
  contributor:
    fullname: López-Galíndez
– volume: 369
  year: 2020
  ident: B405
  article-title: Reconstitution of autophagosome nucleation defines Atg9 vesicles as seeds for membrane formation.
  publication-title: Science
  doi: 10.1126/science.aaz7714
  contributor:
    fullname: Sawa-Makarska
– volume: 10
  year: 2013
  ident: B169
  article-title: Gelsolin activity controls efficient early HIV-1 infection.
  publication-title: Retrovirology
  doi: 10.1186/1742-4690-10-39
  contributor:
    fullname: Garcia-Exposito
– volume: 11
  start-page: 1702
  year: 2015
  ident: B231
  article-title: WHAMM links actin assembly via the Arp2/3 complex to autophagy.
  publication-title: Autophagy
  doi: 10.1080/15548627.2015.1073434
  contributor:
    fullname: Kast
– volume: 12
  start-page: 747
  year: 2010
  ident: B381
  article-title: Plasma membrane contributes to the formation of pre-autophagosomal structures.
  publication-title: Nat. Cell Biol.
  doi: 10.1038/ncb2078
  contributor:
    fullname: Ravikumar
– volume: 310
  start-page: L1042
  year: 2016
  ident: B501
  article-title: Autophagy plays an essential role in cigarette smoke-induced expression of MUC5AC in airway epithelium.
  publication-title: Am. J. Physiol. Lung Cell Mol. Physiol.
  doi: 10.1152/ajplung.00418.2015
  contributor:
    fullname: Zhou
– volume: 120
  start-page: 994
  year: 2012
  ident: B438
  article-title: Autophagy mediates transporter associated with antigen processing-independent presentation of viral epitopes through MHC class I pathway.
  publication-title: Blood
  doi: 10.1182/blood-2012-01-402404
  contributor:
    fullname: Tey
– volume: 3
  year: 2012
  ident: B52
  article-title: Host factors dictate control of viral replication in two HIV-1 controller/chronic progressor transmission pairs.
  publication-title: Nat. Commun.
  doi: 10.1038/ncomms1697
  contributor:
    fullname: Buckheit
– volume: 23
  start-page: 9314
  year: 2004
  ident: B369
  article-title: WIPI-1alpha (WIPI49), a member of the novel 7-bladed WIPI protein family, is aberrantly expressed in human cancer and is linked to starvation-induced autophagy.
  publication-title: Oncogene
  doi: 10.1038/sj.onc.1208331
  contributor:
    fullname: Proikas-Cezanne
– volume: 315
  start-page: 1398
  year: 2007
  ident: B262
  article-title: Autophagy-dependent viral recognition by plasmacytoid dendritic cells.
  publication-title: Science
  doi: 10.1126/science.1136880
  contributor:
    fullname: Lee
– volume: 11
  year: 2014
  ident: B88
  article-title: Stable 293 T and CHO cell lines expressing cleaved, stable HIV-1 envelope glycoprotein trimers for structural and vaccine studies.
  publication-title: Retrovirology
  doi: 10.1186/1742-4690-11-33
  contributor:
    fullname: Chung
– volume: 2
  year: 2014
  ident: B103
  article-title: Making sense of how HIV kills infected CD4 T cells: implications for HIV cure.
  publication-title: Mol. Cell. Ther.
  doi: 10.1186/2052-8426-2-20
  contributor:
    fullname: Cummins
– volume: 182
  start-page: 2125
  year: 2000
  ident: B261
  article-title: Autophagy and the cvt pathway both depend on AUT9.
  publication-title: J. Bacteriol.
  doi: 10.1128/jb.182.8.2125-2133.2000
  contributor:
    fullname: Lang
– volume: 8
  start-page: 1136
  year: 2012
  ident: B179
  article-title: Autophagy and RNA virus interactomes reveal IRGM as a common target.
  publication-title: Autophagy
  doi: 10.4161/auto.20339
  contributor:
    fullname: Grégoire
– volume: 13
  start-page: 619
  year: 2007
  ident: B330
  article-title: The role of autophagy in cardiomyocytes in the basal state and in response to hemodynamic stress.
  publication-title: Nat. Med.
  doi: 10.1038/nm1574
  contributor:
    fullname: Nakai
– volume: 19
  start-page: 5360
  year: 2008
  ident: B213
  article-title: Beclin 1 forms two distinct phosphatidylinositol 3-kinase complexes with mammalian Atg14 and UVRAG.
  publication-title: Mol. Biol. Cell
  doi: 10.1091/mbc.e08-01-0080
  contributor:
    fullname: Itakura
– volume: 9
  year: 2019
  ident: B55
  article-title: HIV-1 envelope glycoproteins isolated from Viremic Non-Progressor individuals are fully functional and cytopathic.
  publication-title: Sci. Rep.
  doi: 10.1038/s41598-019-42075-3
  contributor:
    fullname: Cabrera-Rodriguez
– volume: 22
  start-page: 1084
  year: 2014
  ident: B388
  article-title: Stabilized human TRIM5α protects human T cells from HIV-1 infection.
  publication-title: Mol. Ther.
  doi: 10.1038/mt.2014.52
  contributor:
    fullname: Richardson
– volume: 197
  start-page: 563
  year: 2008
  ident: B358
  article-title: Genetic and immunologic heterogeneity among persons who control HIV infection in the absence of therapy.
  publication-title: J. Infect. Dis.
  doi: 10.1086/526786
  contributor:
    fullname: Pereyra
– volume: 95
  start-page: 8869
  year: 1998
  ident: B85
  article-title: Early establishment of a pool of latently infected, resting CD4(+) T cells during primary HIV-1 infection.
  publication-title: Proc. Natl. Acad. Sci. U.S.A.
  doi: 10.1073/pnas.95.15.8869
  contributor:
    fullname: Chun
– volume: 4
  start-page: 905
  year: 2014
  ident: B485
  article-title: Autophagy is critical for pancreatic tumor growth and progression in tumors with p53 alterations.
  publication-title: Cancer Discov.
  doi: 10.1158/2159-8290.cd-14-0362
  contributor:
    fullname: Yang
– volume: 21
  start-page: 8035
  year: 2001
  ident: B413
  article-title: Identification of components of the murine histone deacetylase 6 complex: link between acetylation and ubiquitination signaling pathways.
  publication-title: Mol. Cell. Biol.
  doi: 10.1128/mcb.21.23.8035-8044.2001
  contributor:
    fullname: Seigneurin-Berny
– volume: 154
  start-page: 1007
  year: 2001
  ident: B51
  article-title: Phosphatidylinositol 4,5-bisphosphate and Arf6-regulated membrane traffic.
  publication-title: J. Cell Biol.
  doi: 10.1083/jcb.200103107
  contributor:
    fullname: Brown
– volume: 15
  start-page: 228
  year: 2014
  ident: B275
  article-title: Crosstalk between the cGAS DNA sensor and Beclin-1 autophagy protein shapes innate antimicrobial immune responses.
  publication-title: Cell Host Microbe
  doi: 10.1016/j.chom.2014.01.009
  contributor:
    fullname: Liang
– volume: 469
  start-page: 323
  year: 2011
  ident: B266
  article-title: Autophagy in immunity and inflammation.
  publication-title: Nature
  doi: 10.1038/nature09782
  contributor:
    fullname: Levine
– volume: 15
  year: 2018
  ident: B327
  article-title: HIV-1 entry inhibitors: a review of experimental and computational studies.
  publication-title: Chem. Biodivers.
  doi: 10.1002/cbdv.201800159
  contributor:
    fullname: Mostashari Rad
– volume: 9
  start-page: S10
  year: 2011
  ident: B72
  article-title: HIV-1 co-receptor usage: influence on mother-to-child transmission and pediatric infection.
  publication-title: J. Transl. Med.
  doi: 10.1186/1479-5876-9-S1-S10
  contributor:
    fullname: Cavarelli
– volume: 68
  start-page: 96
  year: 2005
  ident: B475
  article-title: Inhibition of CCR5-mediated infection by diverse R5 and R5X4 HIV and SIV isolates using novel small molecule inhibitors of CCR5: effects of viral diversity, target cell and receptor density.
  publication-title: Antiviral Res.
  doi: 10.1016/j.antiviral.2005.07.006
  contributor:
    fullname: Willey
– volume: 45
  start-page: 555
  year: 2016
  ident: B207
  article-title: Sumoylation promotes the stability of the DNA sensor cGAS and the adaptor STING to regulate the kinetics of response to DNA virus.
  publication-title: Immunity
  doi: 10.1016/j.immuni.2016.08.014
  contributor:
    fullname: Hu
– volume: 285
  start-page: 356
  year: 2001
  ident: B35
  article-title: CD4(+) and CD8(+) T cell death during human immunodeficiency virus infection in vitro.
  publication-title: Virology
  doi: 10.1006/viro.2001.0969
  contributor:
    fullname: Blanco
– volume: 12
  year: 2011
  ident: B419
  article-title: Atg8: an autophagy-related ubiquitin-like protein family.
  publication-title: Genome Biol.
  doi: 10.1186/gb-2011-12-7-226
  contributor:
    fullname: Shpilka
– volume: 62
  year: 2020
  ident: B476
  article-title: Viral reservoirs in elite controllers of HIV-1 infection: implications for HIV cure strategies.
  publication-title: EBioMedicine
  doi: 10.1016/j.ebiom.2020.103118
  contributor:
    fullname: Woldemeskel
– volume: 51
  start-page: 233
  year: 2010
  ident: B224
  article-title: Infrequent recovery of HIV from but robust exogenous infection of activated CD4(+) T cells in HIV elite controllers.
  publication-title: Clin. Infect. Dis.
  doi: 10.1086/653677
  contributor:
    fullname: Julg
– volume: 282
  start-page: 37298
  year: 2007
  ident: B190
  article-title: The Atg12-Atg5 conjugate has a novel E3-like activity for protein lipidation in autophagy.
  publication-title: J. Biol. Chem.
  doi: 10.1074/jbc.c700195200
  contributor:
    fullname: Hanada
– volume: 29
  start-page: 275
  year: 2015
  ident: B43
  article-title: HIV-1 viral infectivity factor interacts with microtubule-associated protein light chain 3 and inhibits autophagy.
  publication-title: Aids
  doi: 10.1097/qad.0000000000000554
  contributor:
    fullname: Borel
– volume: 8
  year: 2013
  ident: B69
  article-title: Identification of a cluster of HIV-1 controllers infected with low replicating viruses.
  publication-title: PLoS One
  doi: 10.1371/journal.pone.0077663
  contributor:
    fullname: Casado
– volume: 101
  start-page: 10774
  year: 2004
  ident: B195
  article-title: Retrovirus resistance factors Ref1 and Lv1 are species-specific variants of TRIM5alpha.
  publication-title: Proc. Natl. Acad. Sci. U.S.A.
  doi: 10.1073/pnas.0402361101
  contributor:
    fullname: Hatziioannou
– volume: 361
  start-page: 2209
  year: 2009
  ident: B386
  article-title: Vaccination with ALVAC and AIDSVAX to prevent HIV-1 infection in Thailand.
  publication-title: N. Engl. J. Med.
  doi: 10.1056/NEJMoa0908492
  contributor:
    fullname: Rerks-Ngarm
– volume: 15
  start-page: 72
  year: 2018
  ident: B152
  article-title: Molecular signatures of HIV-1 envelope associated with HIV-associated neurocognitive disorders.
  publication-title: Curr. HIV/AIDS Rep.
  doi: 10.1007/s11904-018-0374-3
  contributor:
    fullname: Evering
– volume: 82
  start-page: 7022
  year: 2008
  ident: B128
  article-title: Monitoring early fusion dynamics of human immunodeficiency virus type 1 at single-molecule resolution.
  publication-title: J. Virol.
  doi: 10.1128/jvi.00053-08
  contributor:
    fullname: Dobrowsky
– volume: 18
  start-page: 1480
  year: 1999
  ident: B160
  article-title: EFA6, a sec7 domain-containing exchange factor for ARF6, coordinates membrane recycling and actin cytoskeleton organization.
  publication-title: EMBO J.
  doi: 10.1093/emboj/18.6.1480
  contributor:
    fullname: Franco
– volume: 78
  start-page: 9164
  year: 2004
  ident: B411
  article-title: R5 human immunodeficiency virus type 1 (HIV-1) replicates more efficiently in primary CD4+ T-cell cultures than X4 HIV-1.
  publication-title: J. Virol.
  doi: 10.1128/jvi.78.17.9164-9173.2004
  contributor:
    fullname: Schweighardt
– volume: 589
  start-page: 456
  year: 2021
  ident: B132
  article-title: Sorting nexin 5 mediates virus-induced autophagy and immunity.
  publication-title: Nature
  doi: 10.1038/s41586-020-03056-z
  contributor:
    fullname: Dong
– volume: 447
  start-page: 859
  year: 2007
  ident: B352
  article-title: HDAC6 rescues neurodegeneration and provides an essential link between autophagy and the UPS.
  publication-title: Nature
  doi: 10.1038/nature05853
  contributor:
    fullname: Pandey
– volume: 101
  start-page: 15452
  year: 2004
  ident: B157
  article-title: Ceramide, a target for antiretroviral therapy.
  publication-title: Proc. Natl. Acad. Sci. U.S.A.
  doi: 10.1073/pnas.0402874101
  contributor:
    fullname: Finnegan
– volume: 83
  start-page: 11715
  year: 2009
  ident: B422
  article-title: The heptad repeat 2 domain is a major determinant for enhanced human immunodeficiency virus type 1 (HIV-1) fusion and pathogenicity of a highly pathogenic HIV-1 Env.
  publication-title: J. Virol.
  doi: 10.1128/jvi.00649-09
  contributor:
    fullname: Sivaraman
– volume: 36
  start-page: 1811
  ident: B164
  article-title: Molecular definitions of autophagy and related processes.
  publication-title: EMBO J.
  doi: 10.15252/embj.201796697
  contributor:
    fullname: Galluzzi
– volume: 130
  start-page: 165
  year: 2007
  ident: B332
  article-title: Atg8, a ubiquitin-like protein required for autophagosome formation, mediates membrane tethering and hemifusion.
  publication-title: Cell
  doi: 10.1016/j.cell.2007.05.021
  contributor:
    fullname: Nakatogawa
– volume: 6
  year: 2009
  ident: B370
  article-title: On the steps of cell-to-cell HIV transmission between CD4 T cells.
  publication-title: Retrovirology
  doi: 10.1186/1742-4690-6-89
  contributor:
    fullname: Puigdomenech
– volume: 404
  start-page: 422
  year: 2005
  ident: B3
  article-title: ADP-ribosylation factor 6 regulation of phosphatidylinositol-4,5-bisphosphate synthesis, endocytosis, and exocytosis.
  publication-title: Methods Enzymol.
  doi: 10.1016/s0076-6879(05)04037-1
  contributor:
    fullname: Aikawa
– volume: 112
  start-page: 9412
  year: 2015
  ident: B200
  article-title: Targeting of mTOR catalytic site inhibits multiple steps of the HIV-1 lifecycle and suppresses HIV-1 viremia in humanized mice.
  publication-title: Proc. Natl. Acad. Sci. U.S.A.
  doi: 10.1073/pnas.1511144112
  contributor:
    fullname: Heredia
– volume: 18
  start-page: 3888
  year: 1999
  ident: B318
  article-title: Apg16p is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway.
  publication-title: EMBO J.
  doi: 10.1093/emboj/18.14.3888
  contributor:
    fullname: Mizushima
– volume: 181
  start-page: 8460
  year: 2008
  ident: B104
  article-title: Tat-induced FOXO3a is a key mediator of apoptosis in HIV-1-infected human CD4+ T lymphocytes.
  publication-title: J. Immunol.
  doi: 10.4049/jimmunol.181.12.8460
  contributor:
    fullname: Dabrowska
– volume: 14
  start-page: 926
  year: 2003
  ident: B299
  article-title: HIV-1 envelope proteins complete their folding into six-helix bundles immediately after fusion pore formation.
  publication-title: Mol. Biol. Cell
  doi: 10.1091/mbc.e02-09-0573
  contributor:
    fullname: Markosyan
– volume: 7
  start-page: 111
  year: 2012
  ident: B159
  article-title: Reaping the prevention benefits of highly active antiretroviral treatment: policy implications of HIV prevention trials network 052.
  publication-title: Curr. Opin. HIV AIDS
  doi: 10.1097/coh.0b013e32834fcff6
  contributor:
    fullname: Forsyth
– volume: 196
  start-page: 483
  year: 2012
  ident: B325
  article-title: Arf6 promotes autophagosome formation via effects on phosphatidylinositol 4,5-bisphosphate and phospholipase D.
  publication-title: J. Cell Biol.
  doi: 10.1083/jcb.201110114
  contributor:
    fullname: Moreau
– volume: 85
  start-page: 1149
  year: 1996
  ident: B135
  article-title: A dual-tropic primary HIV-1 isolate that uses fusin and the beta-chemokine receptors CKR-5, CKR-3, and CKR-2b as fusion cofactors.
  publication-title: Cell
  doi: 10.1016/s0092-8674(00)81314-8
  contributor:
    fullname: Doranz
– volume: 76
  start-page: 707
  year: 2002
  ident: B503
  article-title: Evidence for human immunodeficiency virus type 1 replication in vivo in CD14(+) monocytes and its potential role as a source of virus in patients on highly active antiretroviral therapy.
  publication-title: J. Virol.
  doi: 10.1128/jvi.76.2.707-716.2002
  contributor:
    fullname: Zhu
– volume: 5
  start-page: 643
  year: 2004
  ident: B220
  article-title: Retroviral spread by induction of virological synapses.
  publication-title: Traffic
  doi: 10.1111/j.1600-0854.2004.00209.x
  contributor:
    fullname: Jolly
– volume: 275
  start-page: 35137
  year: 2000
  ident: B428
  article-title: Processing, stability, and receptor binding properties of oligomeric envelope glycoprotein from a primary HIV-1 isolate.
  publication-title: J. Biol. Chem.
  doi: 10.1074/jbc.m003868200
  contributor:
    fullname: Staropoli
– volume: 32
  start-page: 654
  year: 2010
  ident: B34
  article-title: Human immunodeficiency virus-1 inhibition of immunoamphisomes in dendritic cells impairs early innate and adaptive immune responses.
  publication-title: Immunity
  doi: 10.1016/j.immuni.2010.04.011
  contributor:
    fullname: Blanchet
– volume: 84
  start-page: 12971
  year: 2010
  ident: B313
  article-title: HIV-1 continues to replicate and evolve in patients with natural control of HIV infection.
  publication-title: J. Virol.
  doi: 10.1128/jvi.00387-10
  contributor:
    fullname: Mens
– volume: 14
  start-page: 266
  year: 2008
  ident: B451
  article-title: Transcription factor FOXO3a controls the persistence of memory CD4(+) T cells during HIV infection.
  publication-title: Nat. Med.
  doi: 10.1038/nm1728
  contributor:
    fullname: van Grevenynghe
– volume: 13
  year: 2019
  ident: B27
  article-title: Dual role of autophagy in diseases of the central nervous system.
  publication-title: Front. Cell Neurosci.
  doi: 10.3389/fncel.2019.00196
  contributor:
    fullname: Bar-Yosef
– volume: 282
  start-page: 4672
  year: 2015
  ident: B233
  article-title: p62/SQSTM1 functions as a signaling hub and an autophagy adaptor.
  publication-title: FEBS J.
  doi: 10.1111/febs.13540
  contributor:
    fullname: Katsuragi
– volume: 286
  start-page: 18890
  year: 2011
  ident: B58
  article-title: Hormonally active vitamin D3 (1alpha,25-dihydroxycholecalciferol) triggers autophagy in human macrophages that inhibits HIV-1 infection.
  publication-title: J. Biol. Chem.
  doi: 10.1074/jbc.m110.206110
  contributor:
    fullname: Campbell
– volume: 8
  year: 2019
  ident: B193
  article-title: Two distinct mechanisms target the autophagy-related E3 complex to the pre-autophagosomal structure.
  publication-title: eLife
  doi: 10.7554/eLife.43088
  contributor:
    fullname: Harada
– volume: 417
  start-page: 455
  year: 2002
  ident: B209
  article-title: HDAC6 is a microtubule-associated deacetylase.
  publication-title: Nature
  doi: 10.1038/417455a
  contributor:
    fullname: Hubbert
– volume: 55
  year: 2019
  ident: B44
  article-title: Different patterns of HIV-1 replication in MACROPHAGES is Led by Co-receptor usage.
  publication-title: Medicina
  doi: 10.3390/medicina55060297
  contributor:
    fullname: Borrajo
– volume: 118
  start-page: 2190
  year: 2008
  ident: B362
  article-title: The autophagy-related protein beclin 1 shows reduced expression in early Alzheimer disease and regulates amyloid beta accumulation in mice.
  publication-title: J. Clin. Invest.
  contributor:
    fullname: Pickford
– volume: 23
  start-page: 33
  year: 1998
  ident: B481
  article-title: Bafilomycin A1 prevents maturation of autophagic vacuoles by inhibiting fusion between autophagosomes and lysosomes in rat hepatoma cell line, H-4-II-E cells.
  publication-title: Cell Struct. Funct.
  doi: 10.1247/csf.23.33
  contributor:
    fullname: Yamamoto
– volume: 96
  start-page: 15109
  year: 1999
  ident: B109
  article-title: HIV-1 and T cell dynamics after interruption of highly active antiretroviral therapy (HAART) in patients with a history of sustained viral suppression.
  publication-title: Proc. Natl. Acad. Sci. U.S.A.
  doi: 10.1073/pnas.96.26.15109
  contributor:
    fullname: Davey
– volume: 19
  start-page: 5720
  year: 2000
  ident: B226
  article-title: LC3, a mammalian homologue of yeast Apg8p, is localized in autophagosome membranes after processing.
  publication-title: EMBO J.
  doi: 10.1093/emboj/19.21.5720
  contributor:
    fullname: Kabeya
– volume: 20
  start-page: 444
  ident: B467
  article-title: LC3 and GATE-16 N termini mediate membrane fusion processes required for autophagosome biogenesis.
  publication-title: Dev. Cell
  doi: 10.1016/j.devcel.2011.02.006
  contributor:
    fullname: Weidberg
– volume: 11
  start-page: 305
  year: 1997
  ident: B151
  article-title: Heterozygosity for a deletion in the CKR-5 gene leads to prolonged AIDS-free survival and slower CD4 T-cell decline in a cohort of HIV-seropositive individuals.
  publication-title: Aids
  doi: 10.1097/00002030-199703110-00007
  contributor:
    fullname: Eugen-Olsen
– volume: 10
  start-page: 1167
  year: 2014
  ident: B334
  article-title: Autophagy plays an important role in the containment of HIV-1 in nonprogressor-infected patients.
  publication-title: Autophagy
  doi: 10.4161/auto.28678
  contributor:
    fullname: Nardacci
– volume: 30
  start-page: 394
  ident: B294
  article-title: TRIM proteins regulate autophagy and can target autophagic substrates by direct recognition.
  publication-title: Dev. Cell
  doi: 10.1016/j.devcel.2014.06.013
  contributor:
    fullname: Mandell
– volume: 42
  start-page: 329
  year: 2015
  ident: B463
  article-title: An infectious molecular clone in early infection with HIV-1 subtype CRF01_AE strains: construction and biological properties.
  publication-title: Mol. Biol. Rep.
  doi: 10.1007/s11033-014-3754-9
  contributor:
    fullname: Wang
– volume: 494
  start-page: 201
  year: 2013
  ident: B418
  article-title: Identification of a candidate therapeutic autophagy-inducing peptide.
  publication-title: Nature
  doi: 10.1038/nature11866
  contributor:
    fullname: Shoji-Kawata
– volume: 105
  start-page: 3199
  year: 2005
  ident: B136
  article-title: Processing and presentation of HLA class I and II epitopes by dendritic cells after transfection with in vitro-transcribed MUC1 RNA.
  publication-title: Blood
  doi: 10.1182/blood-2004-09-3556
  contributor:
    fullname: Dörfel
– volume: 1209
  start-page: 55
  year: 2019
  ident: B296
  article-title: Autophagy and viral infection.
  publication-title: Adv. Exp. Med. Biol.
  doi: 10.1007/978-981-15-0606-2_5
  contributor:
    fullname: Mao
– volume: 22
  start-page: 221
  year: 2005
  ident: B506
  article-title: Spatial separation of HLA-DM/HLA-DR interactions within MIIC and phagosome-induced immune escape.
  publication-title: Immunity
  doi: 10.1016/j.immuni.2005.01.006
  contributor:
    fullname: Zwart
– volume: 21
  start-page: 2106
  year: 2007
  ident: B29
  article-title: The intestinal mucosa as a reservoir of HIV-1 infection after successful HAART.
  publication-title: Aids
  doi: 10.1097/qad.0b013e3282efb74b
  contributor:
    fullname: Belmonte
– volume: 2
  start-page: 1240
  year: 1996
  ident: B208
  article-title: The role of a mutant CCR5 allele in HIV-1 transmission and disease progression.
  publication-title: Nat. Med.
  doi: 10.1038/nm1196-1240
  contributor:
    fullname: Huang
– volume: 41
  start-page: 3559
  year: 2003
  ident: B250
  article-title: Quality control trial for human immunodeficiency virus type 1 drug resistance testing using clinical samples reveals problems with detecting minority species and interpretation of test results.
  publication-title: J. Clin. Microbiol.
  doi: 10.1128/jcm.41.8.3559-3565.2003
  contributor:
    fullname: Korn
– volume: 1
  start-page: e13
  year: 2014
  ident: B380
  article-title: Panobinostat, a histone deacetylase inhibitor, for latent-virus reactivation in HIV-infected patients on suppressive antiretroviral therapy: a phase 1/2, single group, clinical trial.
  publication-title: Lancet HIV
  doi: 10.1016/S2352-3018(14)70014-1
  contributor:
    fullname: Rasmussen
– volume: 22
  start-page: 377
  year: 2015
  ident: B156
  article-title: Oxidative stress and autophagy: the clash between damage and metabolic needs.
  publication-title: Cell Death Differ.
  doi: 10.1038/cdd.2014.150
  contributor:
    fullname: Filomeni
– volume: 551
  start-page: E6
  year: 2017
  ident: B395
  article-title: Re-evaluating evolution in the HIV reservoir.
  publication-title: Nature
  doi: 10.1038/nature24634
  contributor:
    fullname: Rosenbloom
– volume: 27
  start-page: 878
  year: 2019
  ident: B81
  article-title: Molecular mechanism of HIV-1 entry.
  publication-title: Trends Microbiol.
  doi: 10.1016/j.tim.2019.06.002
  contributor:
    fullname: Chen
– volume: 7
  year: 2017
  ident: B153
  article-title: The autophagy elongation complex (ATG5-12/16L1) positively regulates HCV replication and is required for wild-type membranous web formation.
  publication-title: Sci. Rep.
  doi: 10.1038/srep40351
  contributor:
    fullname: Fahmy
– volume: 100
  start-page: 15077
  year: 2003
  ident: B491
  article-title: Beclin 1, an autophagy gene essential for early embryonic development, is a haploinsufficient tumor suppressor.
  publication-title: Proc. Natl. Acad. Sci. U.S.A.
  doi: 10.1073/pnas.2436255100
  contributor:
    fullname: Yue
– volume: 3
  start-page: 309
  year: 2008
  ident: B83
  article-title: Autophagy in neuroprotection and neurodegeneration: a question of balance.
  publication-title: Future Neurol.
  doi: 10.2217/14796708.3.3.309
  contributor:
    fullname: Cherra
– volume: 55
  start-page: 238
  year: 2014
  ident: B133
  article-title: WIPI2 links LC3 conjugation with PI3P, autophagosome formation, and pathogen clearance by recruiting Atg12-5-16L1.
  publication-title: Mol. Cell.
  doi: 10.1016/j.molcel.2014.05.021
  contributor:
    fullname: Dooley
– volume: 286
  start-page: 32324
  year: 2011
  ident: B312
  article-title: Defective hypothalamic autophagy directs the central pathogenesis of obesity via the IkappaB kinase beta (IKKbeta)/NF-kappaB pathway.
  publication-title: J. Biol. Chem.
  doi: 10.1074/jbc.m111.254417
  contributor:
    fullname: Meng
– volume: 283
  start-page: 33175
  year: 2008
  ident: B417
  article-title: MyD88 and Trif target Beclin 1 to trigger autophagy in macrophages.
  publication-title: J. Biol. Chem.
  doi: 10.1074/jbc.m804478200
  contributor:
    fullname: Shi
– volume: 3
  start-page: 293
  year: 2011
  ident: B430
  article-title: How HIV takes advantage of the cytoskeleton in entry and replication.
  publication-title: Viruses
  doi: 10.3390/v3040293
  contributor:
    fullname: Stolp
– volume: 72
  start-page: 8586
  year: 1998
  ident: B277
  article-title: Protection against fatal Sindbis virus encephalitis by beclin, a novel Bcl-2-interacting protein.
  publication-title: J. Virol.
  doi: 10.1128/jvi.72.11.8586-8596.1998
  contributor:
    fullname: Liang
– volume: 7
  start-page: e652
  year: 2020
  ident: B14
  article-title: Haemopoietic cell transplantation in patients living with HIV.
  publication-title: Lancet HIV
  doi: 10.1016/S2352-3018(20)30117-X
  contributor:
    fullname: Ambinder
– volume: 410
  start-page: 582
  year: 2011
  ident: B80
  article-title: HIV-1 envelope glycoprotein biosynthesis, trafficking, and incorporation.
  publication-title: J. Mol. Biol.
  doi: 10.1016/j.jmb.2011.04.042
  contributor:
    fullname: Checkley
– volume: 278
  start-page: 29278
  year: 2003
  ident: B197
  article-title: Post-translational modifications of three members of the human MAP1LC3 family and detection of a novel type of modification for MAP1LC3B.
  publication-title: J. Biol. Chem.
  doi: 10.1074/jbc.m303800200
  contributor:
    fullname: He
– volume: 112
  start-page: 1493
  year: 2008
  ident: B254
  article-title: Ulk1 plays a critical role in the autophagic clearance of mitochondria and ribosomes during reticulocyte maturation.
  publication-title: Blood
  doi: 10.1182/blood-2008-02-137398
  contributor:
    fullname: Kundu
– volume: 278
  start-page: 41573
  year: 2003
  ident: B130
  article-title: Multiple roles for Arf6: sorting, structuring, and signaling at the plasma membrane.
  publication-title: J. Biol. Chem.
  doi: 10.1074/jbc.r300026200
  contributor:
    fullname: Donaldson
– volume: 13
  year: 2016
  ident: B442
  article-title: CCR5 interaction with HIV-1 Env contributes to Env-induced depletion of CD4 T cells in vitro and in vivo.
  publication-title: Retrovirology
  doi: 10.1186/s12977-016-0255-z
  contributor:
    fullname: Tsao
– volume: 11
  start-page: 385
  year: 2009
  ident: B305
  article-title: Two Beclin 1-binding proteins, Atg14L and Rubicon, reciprocally regulate autophagy at different stages.
  publication-title: Nat. Cell Biol.
  doi: 10.1038/ncb1846
  contributor:
    fullname: Matsunaga
– volume: 72
  start-page: 3083
  year: 2015
  ident: B342
  article-title: Atg1 family kinases in autophagy initiation.
  publication-title: Cell Mol. Life Sci.
  doi: 10.1007/s00018-015-1917-z
  contributor:
    fullname: Noda
– volume: 8
  start-page: 45
  year: 2011
  ident: B176
  article-title: Coreceptors and HIV-1 pathogenesis.
  publication-title: Curr. HIV/AIDS Rep.
  doi: 10.1007/s11904-010-0069-x
  contributor:
    fullname: Gorry
– volume: 81
  start-page: 2508
  year: 2007
  ident: B39
  article-title: Isolation and characterization of replication-competent human immunodeficiency virus type 1 from a subset of elite suppressors.
  publication-title: J. Virol.
  doi: 10.1128/jvi.02165-06
  contributor:
    fullname: Blankson
– volume: 8
  year: 2016
  ident: B291
  article-title: The life-cycle of the HIV-1 Gag-RNA complex.
  publication-title: Viruses
  doi: 10.3390/v8090248
  contributor:
    fullname: Mailler
– volume: 47
  start-page: 321
  year: 2003
  ident: B363
  article-title: Autophagy is induced during cell death by incompatibility and is essential for differentiation in the filamentous fungus Podospora anserina.
  publication-title: Mol. Microbiol.
  doi: 10.1046/j.1365-2958.2003.03208.x
  contributor:
    fullname: Pinan-Lucarré
– volume: 531
  start-page: 62
  year: 2002
  ident: B368
  article-title: The regulation of phospholipase D by inositol phospholipids and small GTPases.
  publication-title: FEBS Lett.
  doi: 10.1016/s0014-5793(02)03410-5
  contributor:
    fullname: Powner
– volume: 181
  start-page: 6882
  year: 2008
  ident: B25
  article-title: PI4P5-kinase Ialpha is required for efficient HIV-1 entry and infection of T cells.
  publication-title: J. Immunol.
  doi: 10.4049/jimmunol.181.10.6882
  contributor:
    fullname: Barrero-Villar
– volume: 24
  start-page: 923
  year: 2018
  ident: B93
  article-title: Rapid HIV RNA rebound after antiretroviral treatment interruption in persons durably suppressed in Fiebig I acute HIV infection.
  publication-title: Nat. Med.
  doi: 10.1038/s41591-018-0026-6
  contributor:
    fullname: Colby
– volume: 9
  year: 2016
  ident: B297
  article-title: Mystery solved: trehalose kickstarts autophagy by blocking glucose transport.
  publication-title: Sci. Signal.
  doi: 10.1126/scisignal.aaf1937
  contributor:
    fullname: Mardones
– volume: 12
  start-page: 155
  year: 2007
  ident: B242
  article-title: Fission yeast autophagy induced by nitrogen starvation generates a nitrogen source that drives adaptation processes.
  publication-title: Genes Cells
  doi: 10.1111/j.1365-2443.2007.01041.x
  contributor:
    fullname: Kohda
– volume: 5
  year: 2010
  ident: B452
  article-title: HIV-1 inhibits autophagy in bystander macrophage/monocytic cells through Src-Akt and STAT3.
  publication-title: PLoS One
  doi: 10.1371/journal.pone.0011733
  contributor:
    fullname: van Grol
– volume: 381
  start-page: 661
  year: 1996
  ident: B120
  article-title: Identification of a major co-receptor for primary isolates of HIV-1.
  publication-title: Nature
  doi: 10.1038/381661a0
  contributor:
    fullname: Deng
– volume: 6
  year: 2015
  ident: B101
  article-title: Actin nucleation by WH2 domains at the autophagosome.
  publication-title: Nat. Commun.
  doi: 10.1038/ncomms8888
  contributor:
    fullname: Coutts
– volume: 51
  start-page: 76
  year: 1998
  ident: B256
  article-title: Human ULK1, a novel serine/threonine kinase related to UNC-51 kinase of Caenorhabditis elegans: cDNA cloning, expression, and chromosomal assignment.
  publication-title: Genomics
  doi: 10.1006/geno.1998.5340
  contributor:
    fullname: Kuroyanagi
– volume: 1
  year: 2013
  ident: B434
  article-title: Molecular events in late stages of HIV-1 replication.
  publication-title: JSM Microbiol.
  contributor:
    fullname: Sutton
– start-page: 450
  year: 2015
  ident: B215
  article-title: Viruses and the autophagy pathway.
  publication-title: Virology
  doi: 10.1016/j.virol.2015.03.042
  contributor:
    fullname: Jackson
– volume: 26
  start-page: 824
  year: 2020
  ident: B82
  article-title: Endoplasmic reticulum stress and autophagy in HIV-1-associated neurocognitive disorders.
  publication-title: J. Neurovirol.
  doi: 10.1007/s13365-020-00906-4
  contributor:
    fullname: Chen
– volume: 23
  start-page: R40
  year: 2014
  ident: B493
  article-title: CRISPR/Cas9 for genome editing: progress, implications and challenges.
  publication-title: Hum. Mol. Genet.
  doi: 10.1093/hmg/ddu125
  contributor:
    fullname: Zhang
– volume: 34
  start-page: 76
  year: 2018
  ident: B453
  article-title: Combating the HIV reservoirs.
  publication-title: Biotechnol. Genet. Eng. Rev.
  doi: 10.1080/02648725.2018.1471641
  contributor:
    fullname: van Marle
– volume: 199
  start-page: 283
  year: 2004
  ident: B219
  article-title: HIV-1 cell to cell transfer across an Env-induced, actin-dependent synapse.
  publication-title: J. Exp. Med.
  doi: 10.1084/jem.20030648
  contributor:
    fullname: Jolly
– volume: 182
  start-page: 685
  year: 2008
  ident: B21
  article-title: Autophagosome formation from membrane compartments enriched in phosphatidylinositol 3-phosphate and dynamically connected to the endoplasmic reticulum.
  publication-title: J. Cell Biol.
  doi: 10.1083/jcb.200803137
  contributor:
    fullname: Axe
– volume: 116
  start-page: 4806
  year: 2010
  ident: B280
  article-title: FIP200 is required for the cell-autonomous maintenance of fetal hematopoietic stem cells.
  publication-title: Blood
  doi: 10.1182/blood-2010-06-288589
  contributor:
    fullname: Liu
– volume: 22
  start-page: 1148
  year: 2011
  ident: B168
  article-title: HIV-1 requires Arf6-mediated membrane dynamics to efficiently enter and infect T lymphocytes.
  publication-title: Mol. Biol. Cell
  doi: 10.1091/mbc.e10-08-0722
  contributor:
    fullname: Garcia-Exposito
– volume: 20
  start-page: 139
  year: 2014
  ident: B54
  article-title: HIV-1 persistence in CD4+ T cells with stem cell-like properties.
  publication-title: Nat. Med.
  doi: 10.1038/nm.3445
  contributor:
    fullname: Buzon
– volume: 427
  start-page: 848
  year: 2004
  ident: B432
  article-title: The cytoplasmic body component TRIM5alpha restricts HIV-1 infection in Old World monkeys.
  publication-title: Nature
  doi: 10.1038/nature02343
  contributor:
    fullname: Stremlau
– volume: 227
  start-page: 1042
  year: 2012
  ident: B31
  article-title: TWEAK causes myotube atrophy through coordinated activation of ubiquitin-proteasome system, autophagy, and caspases.
  publication-title: J. Cell. Physiol.
  doi: 10.1002/jcp.22821
  contributor:
    fullname: Bhatnagar
– volume: 172
  start-page: 1239
  year: 2018
  ident: B202
  article-title: The biology of CRISPR-Cas: backward and forward.
  publication-title: Cell
  doi: 10.1016/j.cell.2017.11.032
  contributor:
    fullname: Hille
– volume: 94
  start-page: 13193
  year: 1997
  ident: B87
  article-title: Presence of an inducible HIV-1 latent reservoir during highly active antiretroviral therapy.
  publication-title: Proc. Natl. Acad. Sci. U.S.A.
  doi: 10.1073/pnas.94.24.13193
  contributor:
    fullname: Chun
– volume: 12
  start-page: 2394
  year: 2013
  ident: B28
  article-title: Quantitative proteomics reveals the induction of mitophagy in tumor necrosis factor-α-activated (TNFα) macrophages.
  publication-title: Mol. Cell. Proteomics
  doi: 10.1074/mcp.m112.025775
  contributor:
    fullname: Bell
– volume: 60
  start-page: 569
  year: 2006
  ident: B127
  article-title: Exhaustive genotyping of the interferon alpha receptor 1 (IFNAR1) gene and association of an IFNAR1 protein variant with AIDS progression or susceptibility to HIV-1 infection in a French AIDS cohort.
  publication-title: Biomed. Pharmacother.
  doi: 10.1016/j.biopha.2006.08.002
  contributor:
    fullname: Diop
– volume: 134
  start-page: 782
  year: 2008
  ident: B488
  article-title: HIV envelope-CXCR4 signaling activates cofilin to overcome cortical actin restriction in resting CD4 T cells.
  publication-title: Cell
  doi: 10.1016/j.cell.2008.06.036
  contributor:
    fullname: Yoder
– volume: 69
  start-page: 2527
  year: 2014
  ident: B384
  article-title: Evolution of HIV-1 quasispecies and coreceptor use in cell reservoirs of patients on suppressive antiretroviral therapy.
  publication-title: J. Antimicrob. Chemother.
  doi: 10.1093/jac/dku147
  contributor:
    fullname: Raymond
– volume: 6
  year: 2011
  ident: B415
  article-title: HIV-1 gp120 induces expression of IL-6 through a nuclear factor-kappa B-dependent mechanism: suppression by gp120 specific small interfering RNA.
  publication-title: PLoS One
  doi: 10.1371/journal.pone.0021261
  contributor:
    fullname: Shah
– volume: 27
  start-page: 1110
  year: 2008
  ident: B119
  article-title: Toll-like receptors control autophagy.
  publication-title: EMBO J.
  doi: 10.1038/emboj.2008.31
  contributor:
    fullname: Delgado
– volume: 360
  start-page: 692
  year: 2009
  ident: B210
  article-title: Long-term control of HIV by CCR5 Delta32/Delta32 stem-cell transplantation.
  publication-title: N. Engl. J. Med.
  doi: 10.1056/nejmoa0802905
  contributor:
    fullname: Hütter
– volume: 9
  year: 2017
  ident: B269
  article-title: Canonical and non-canonical autophagy in HIV-1 replication cycle.
  publication-title: Viruses
  doi: 10.3390/v9100270
  contributor:
    fullname: Leymarie
– volume: 187
  start-page: 1623
  year: 1998
  ident: B385
  article-title: HIV-1 selection by epidermal dendritic cells during transmission across human skin.
  publication-title: J. Exp. Med.
  doi: 10.1084/jem.187.10.1623
  contributor:
    fullname: Reece
– volume: 4
  start-page: 202
  year: 2015
  ident: B181
  article-title: WIPI-mediated autophagy and longevity.
  publication-title: Cells
  doi: 10.3390/cells4020202
  contributor:
    fullname: Grimmel
– volume: 135
  start-page: 3151
  year: 1985
  ident: B308
  article-title: Cellular tropism of the human retrovirus HTLV-III/LAV. I. Role of T cell activation and expression of the T4 antigen.
  publication-title: J. Immunol.
  doi: 10.4049/jimmunol.135.5.3151
  contributor:
    fullname: McDougal
– volume: 283
  start-page: 22847
  year: 2008
  ident: B211
  article-title: Structural basis for sorting mechanism of p62 in selective autophagy.
  publication-title: J. Biol. Chem.
  doi: 10.1074/jbc.m802182200
  contributor:
    fullname: Ichimura
– volume: 584
  start-page: 1374
  year: 2010
  ident: B244
  article-title: Physiological significance of selective degradation of p62 by autophagy.
  publication-title: FEBS Lett.
  doi: 10.1016/j.febslet.2010.02.017
  contributor:
    fullname: Komatsu
– volume: 6
  start-page: 354
  year: 2009
  ident: B222
  article-title: Autophagy induction by the pathogen receptor CD46.
  publication-title: Cell Host Microbe
  doi: 10.1016/j.chom.2009.09.006
  contributor:
    fullname: Joubert
– volume: 87
  start-page: 12499
  year: 2013
  ident: B274
  article-title: Kaposi’s sarcoma-associated herpesvirus K7 modulates Rubicon-mediated inhibition of autophagosome maturation.
  publication-title: J. Virol.
  doi: 10.1128/jvi.01898-13
  contributor:
    fullname: Liang
– volume: 20
  start-page: 111
  year: 2004
  ident: B324
  article-title: The CCR5 and CXCR4 coreceptors–central to understanding the transmission and pathogenesis of human immunodeficiency virus type 1 infection.
  publication-title: AIDS Res. Hum. Retroviruses
  doi: 10.1089/088922204322749567
  contributor:
    fullname: Moore
– volume: 32
  start-page: 227
  year: 2010
  ident: B263
  article-title: In vivo requirement for Atg5 in antigen presentation by dendritic cells.
  publication-title: Immunity
  doi: 10.1016/j.immuni.2009.12.006
  contributor:
    fullname: Lee
– volume: 11
  start-page: 468
  year: 2009
  ident: B497
  article-title: Distinct regulation of autophagic activity by Atg14L and Rubicon associated with Beclin 1-phosphatidylinositol-3-kinase complex.
  publication-title: Nat. Cell Biol.
  doi: 10.1038/ncb1854
  contributor:
    fullname: Zhong
– volume: 3
  year: 2008
  ident: B71
  article-title: HIV-1 with multiple CCR5/CXCR4 chimeric receptor use is predictive of immunological failure in infected children.
  publication-title: PLoS One
  doi: 10.1371/journal.pone.0003292
  contributor:
    fullname: Cavarelli
– volume: 104
  start-page: 14050
  year: 2007
  ident: B223
  article-title: The Atg5 Atg12 conjugate associates with innate antiviral immune responses.
  publication-title: Proc. Natl. Acad. Sci. U.S.A.
  doi: 10.1073/pnas.0704014104
  contributor:
    fullname: Jounai
– volume: 83
  start-page: 329
  year: 2009
  ident: B194
  article-title: Evidence for persistent low-level viremia in individuals who control human immunodeficiency virus in the absence of antiretroviral therapy.
  publication-title: J. Virol.
  doi: 10.1128/jvi.01763-08
  contributor:
    fullname: Hatano
– volume: 10
  start-page: 776
  year: 2008
  ident: B273
  article-title: Beclin1-binding UVRAG targets the class C Vps complex to coordinate autophagosome maturation and endocytic trafficking.
  publication-title: Nat. Cell Biol.
  doi: 10.1038/ncb1740
  contributor:
    fullname: Liang
– volume: 200
  start-page: 1714
  year: 2009
  ident: B348
  article-title: Clinical outcomes of elite controllers, viremic controllers, and long-term nonprogressors in the US Department of Defense HIV natural history study.
  publication-title: J. Infect. Dis.
  doi: 10.1086/646609
  contributor:
    fullname: Okulicz
– volume: 402
  start-page: 672
  year: 1999
  ident: B276
  article-title: Induction of autophagy and inhibition of tumorigenesis by beclin 1.
  publication-title: Nature
  doi: 10.1038/45257
  contributor:
    fullname: Liang
– volume: 104
  start-page: 14489
  year: 2007
  ident: B247
  article-title: Essential role for autophagy protein Atg7 in the maintenance of axonal homeostasis and the prevention of axonal degeneration.
  publication-title: Proc. Natl. Acad. Sci. U.S.A.
  doi: 10.1073/pnas.0701311104
  contributor:
    fullname: Komatsu
– volume: 13
  start-page: 471
  year: 2015
  ident: B56
  article-title: HIV-1 capsid: the multifaceted key player in HIV-1 infection.
  publication-title: Nat. Rev. Microbiol.
  doi: 10.1038/nrmicro3503
  contributor:
    fullname: Campbell
– volume: 13
  year: 2018
  ident: B138
  article-title: Editing of the human TRIM5 gene to introduce mutations with the potential to inhibit HIV-1.
  publication-title: PLoS One
  doi: 10.1371/journal.pone.0191709
  contributor:
    fullname: Dufour
– volume: 54
  start-page: 166
  year: 2020
  ident: B183
  article-title: Recent discoveries in HIV-1 reverse transcriptase inhibitors.
  publication-title: Curr. Opin. Pharmacol.
  doi: 10.1016/j.coph.2020.09.017
  contributor:
    fullname: Gu
– volume: 292
  start-page: 6014
  year: 2017
  ident: B425
  article-title: SERINC5 protein inhibits HIV-1 fusion pore formation by promoting functional inactivation of envelope glycoproteins.
  publication-title: J. Biol. Chem.
  doi: 10.1074/jbc.m117.777714
  contributor:
    fullname: Sood
– volume: 186
  start-page: 255
  year: 2009
  ident: B257
  article-title: Autophagy pathway intersects with HIV-1 biosynthesis and regulates viral yields in macrophages.
  publication-title: J. Cell Biol.
  doi: 10.1083/jcb.200903070
  contributor:
    fullname: Kyei
– volume: 5
  start-page: 649
  year: 2009
  ident: B314
  article-title: A novel, human Atg13 binding protein, Atg101, interacts with ULK1 and is essential for macroautophagy.
  publication-title: Autophagy
  doi: 10.4161/auto.5.5.8249
  contributor:
    fullname: Mercer
– volume: 33
  start-page: 639
  year: 2005
  ident: B131
  article-title: Localization and function of Arf family GTPases.
  publication-title: Biochem. Soc. Trans.
  doi: 10.1042/bst0330639
  contributor:
    fullname: Donaldson
– volume: 10
  year: 2014
  ident: B145
  article-title: Activation of HIV transcription with short-course vorinostat in HIV-infected patients on suppressive antiretroviral therapy.
  publication-title: PLoS Pathog.
  doi: 10.1371/journal.ppat.1004473
  contributor:
    fullname: Elliott
– volume: 275
  start-page: 23736
  year: 2000
  ident: B49
  article-title: Identification of residues of CXCR4 critical for human immunodeficiency virus coreceptor and chemokine receptor activities.
  publication-title: J. Biol. Chem.
  doi: 10.1074/jbc.m000776200
  contributor:
    fullname: Brelot
– volume: 284
  start-page: 32602
  year: 2009
  ident: B163
  article-title: Differential involvement of Atg16L1 in Crohn disease and canonical autophagy: analysis of the organization of the Atg16L1 complex in fibroblasts.
  publication-title: J. Biol. Chem.
  doi: 10.1074/jbc.m109.037671
  contributor:
    fullname: Fujita
– volume: 13
  start-page: 106
  year: 2021
  ident: B281
  article-title: Effect of an antagonistic peptide of CCR5 on the expression of autophagy-related genes and β-arrestin 2 in lung tissues of asthmatic mice.
  publication-title: Allergy Asthma Immunol. Res.
  doi: 10.4168/aair.2021.13.1.106
  contributor:
    fullname: Liu
– volume: 94
  year: 2020
  ident: B383
  article-title: Trehalose inhibits human immunodeficiency virus type 1 infection in primary human macrophages and CD4(+) T lymphocytes through two distinct mechanisms.
  publication-title: J. Virol.
  doi: 10.1128/JVI.00237-20
  contributor:
    fullname: Rawat
– volume: 23
  start-page: 1848
  year: 2015
  ident: B375
  article-title: Structure of the human Atg13-Atg101 HORMA heterodimer: an interaction hub within the ULK1 complex.
  publication-title: Structure
  doi: 10.1016/j.str.2015.07.011
  contributor:
    fullname: Qi
– volume: 54
  start-page: 5855
  year: 2017
  ident: B64
  article-title: Role of autophagy in HIV pathogenesis and drug abuse.
  publication-title: Mol. Neurobiol.
  doi: 10.1007/s12035-016-0118-6
  contributor:
    fullname: Cao
– volume: 23
  start-page: 1437
  year: 2009
  ident: B258
  article-title: Persistence of high levels of blood soluble human leukocyte antigen-G is associated with rapid progression of HIV infection.
  publication-title: Aids
  doi: 10.1097/qad.0b013e32832d0825
  contributor:
    fullname: Lajoie
– volume: 99
  start-page: 163
  year: 2018
  ident: B447
  article-title: Autophagy and MHC-restricted antigen presentation.
  publication-title: Mol. Immunol.
  doi: 10.1016/j.molimm.2018.05.009
  contributor:
    fullname: Valečka
– volume: 8
  ident: B60
  article-title: Vitamin D inhibits human immunodeficiency virus type 1 and Mycobacterium tuberculosis infection in macrophages through the induction of autophagy.
  publication-title: PLoS Pathog.
  doi: 10.1371/journal.ppat.1002689
  contributor:
    fullname: Campbell
– volume: 165
  start-page: 427
  year: 1992
  ident: B394
  article-title: Viral phenotype and immune response in primary human immunodeficiency virus type 1 infection.
  publication-title: J. Infect. Dis.
  doi: 10.1093/infdis/165.3.427
  contributor:
    fullname: Roos
– volume: 154
  start-page: 1285
  year: 2013
  ident: B372
  article-title: Diverse autophagosome membrane sources coalesce in recycling endosomes.
  publication-title: Cell
  doi: 10.1016/j.cell.2013.08.044
  contributor:
    fullname: Puri
– volume: 287
  start-page: 39275
  year: 2012
  ident: B6
  article-title: ATG8 family proteins act as scaffolds for assembly of the ULK complex: sequence requirements for LC3-interacting region (LIR) motifs.
  publication-title: J. Biol. Chem.
  doi: 10.1074/jbc.m112.378109
  contributor:
    fullname: Alemu
– volume: 27
  start-page: 406
  year: 2007
  ident: B118
  article-title: Human immunodeficiency virus controllers: mechanisms of durable virus control in the absence of antiretroviral therapy.
  publication-title: Immunity
  doi: 10.1016/j.immuni.2007.08.010
  contributor:
    fullname: Deeks
– volume: 7
  start-page: 683
  year: 2011
  ident: B420
  article-title: Dissecting the involvement of LC3B and GATE-16 in p62 recruitment into autophagosomes.
  publication-title: Autophagy
  doi: 10.4161/auto.7.7.15279
  contributor:
    fullname: Shvets
– year: 2020
  ident: B445
  publication-title: Global HIV & AIDS Statistics.
– volume: 330
  start-page: 1551
  year: 2010
  ident: B359
  article-title: The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.
  publication-title: Science
  doi: 10.1126/science.1195271
  contributor:
    fullname: Pereyra
– volume: 17
  start-page: 1112
  year: 2015
  ident: B315
  article-title: CapZ regulates autophagosomal membrane shaping by promoting actin assembly inside the isolation membrane.
  publication-title: Nat. Cell Biol.
  doi: 10.1038/ncb3215
  contributor:
    fullname: Mi
– volume: 22
  start-page: 47
  year: 2014
  ident: B435
  article-title: Structural basis of the autophagy-related LC3/Atg13 LIR complex: recognition and interaction mechanism.
  publication-title: Structure
  doi: 10.1016/j.str.2013.09.023
  contributor:
    fullname: Suzuki
– volume: 16
  start-page: 5445
  year: 2005
  ident: B448
  article-title: Histone deacetylase 6 regulates human immunodeficiency virus type 1 infection.
  publication-title: Mol. Biol. Cell
  doi: 10.1091/mbc.e05-04-0354
  contributor:
    fullname: Valenzuela-Fernandez
– volume: 99
  start-page: 521
  year: 1999
  ident: B203
  article-title: Phosphatidylinositol 4-phosphate 5-kinase alpha is a downstream effector of the small G protein ARF6 in membrane ruffle formation.
  publication-title: Cell
  doi: 10.1016/s0092-8674(00)81540-8
  contributor:
    fullname: Honda
– volume: 117
  start-page: 2805
  year: 2004
  ident: B227
  article-title: LC3, GABARAP and GATE16 localize to autophagosomal membrane depending on form-II formation.
  publication-title: J. Cell Sci.
  doi: 10.1242/jcs.01131
  contributor:
    fullname: Kabeya
– volume: 389
  start-page: 243
  year: 2015
  ident: B175
  article-title: Illustrations of the HIV life cycle.
  publication-title: Curr. Top. Microbiol. Immunol.
  doi: 10.1007/82_2015_437
  contributor:
    fullname: Goodsell
– volume: 11
  year: 2015
  ident: B57
  article-title: Human immunodeficiency virus type 1 Nef inhibits autophagy through transcription factor EB sequestration.
  publication-title: PLoS Pathog.
  doi: 10.1371/journal.ppat.1005018
  contributor:
    fullname: Campbell
– volume: 96
  start-page: 10958
  year: 1999
  ident: B86
  article-title: Latent reservoirs of HIV: obstacles to the eradication of virus.
  publication-title: Proc. Natl. Acad. Sci. U.S.A.
  doi: 10.1073/pnas.96.20.10958
  contributor:
    fullname: Chun
– volume: 6
  ident: B229
  article-title: Elimination of HIV-1 genomes from human T-lymphoid cells by CRISPR/Cas9 gene editing.
  publication-title: Sci. Rep.
  contributor:
    fullname: Kaminski
– volume: 117
  start-page: 2791
  year: 2011
  ident: B10
  article-title: Evidence for the cure of HIV infection by CCR5Δ32/Δ32 stem cell transplantation.
  publication-title: Blood
  doi: 10.1182/blood-2010-09-309591
  contributor:
    fullname: Allers
– volume: 85
  start-page: 1135
  year: 1996
  ident: B84
  article-title: The beta-chemokine receptors CCR3 and CCR5 facilitate infection by primary HIV-1 isolates.
  publication-title: Cell
  doi: 10.1016/s0092-8674(00)81313-6
  contributor:
    fullname: Choe
– volume: 69
  start-page: 1810
  year: 1995
  ident: B100
  article-title: Syncytium-inducing (SI) phenotype suppression at seroconversion after intramuscular inoculation of a non-syncytium-inducing/SI phenotypically mixed human immunodeficiency virus population.
  publication-title: J. Virol.
  doi: 10.1128/jvi.69.3.1810-1818.1995
  contributor:
    fullname: Cornelissen
– volume: 11
  start-page: 181
  year: 2010
  ident: B300
  article-title: CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea.
  publication-title: Nat. Rev. Genet.
  doi: 10.1038/nrg2749
  contributor:
    fullname: Marraffini
– volume: 11
  year: 2020
  ident: B270
  article-title: Clearance of HIV infection by selective elimination of host cells capable of producing HIV.
  publication-title: Nat. Commun.
  doi: 10.1038/s41467-020-20218-9
  contributor:
    fullname: Li
– volume: 71
  start-page: 196
  year: 2014
  ident: B267
  article-title: Redox regulation of antioxidants, autophagy, and the response to stress: implications for electrophile therapeutics.
  publication-title: Free Radic. Biol. Med.
  doi: 10.1016/j.freeradbiomed.2014.03.025
  contributor:
    fullname: Levonen
– volume: 9
  year: 2013
  ident: B321
  article-title: 24 hours in the life of HIV-1 in a T cell line.
  publication-title: PLoS Pathog.
  doi: 10.1371/journal.ppat.1003161
  contributor:
    fullname: Mohammadi
– volume: 95
  start-page: 149
  year: 2016
  ident: B355
  article-title: Autophagy and mammalian viruses: roles in immune response, viral replication, and beyond.
  publication-title: Adv. Virus Res.
  doi: 10.1016/bs.aivir.2016.02.002
  contributor:
    fullname: Paul
– volume: 9
  start-page: 1085
  year: 1995
  ident: B426
  article-title: Lower prevalence and incidence of HIV-1 syncytium-inducing phenotype among injecting drug users compared with homosexual men.
  publication-title: Aids
  doi: 10.1097/00002030-199509000-00016
  contributor:
    fullname: Spijkerman
– volume: 8
  year: 2017
  ident: B465
  article-title: Targeting TRIM5α in HIV cure strategies for the CRISPR-Cas9 Era.
  publication-title: Front. Immunol.
  doi: 10.3389/fimmu.2017.01616
  contributor:
    fullname: Weatherley
– volume: 389
  start-page: 981
  year: 1997
  ident: B470
  article-title: Macrophage-tropic HIV and SIV envelope proteins induce a signal through the CCR5 chemokine receptor.
  publication-title: Nature
  doi: 10.1038/40173
  contributor:
    fullname: Weissman
– volume: 8
  start-page: 445
  year: 2012
  ident: B238
  article-title: Guidelines for the use and interpretation of assays for monitoring autophagy.
  publication-title: Autophagy
  doi: 10.4161/auto.19496
  contributor:
    fullname: Klionsky
– volume: 74
  start-page: 1139
  year: 2011
  ident: B374
  article-title: Programmed neuronal cell death induced by HIV-1 tat and methamphetamine.
  publication-title: Microsc. Res. Tech.
  doi: 10.1002/jemt.21006
  contributor:
    fullname: Qi
– volume: 382
  start-page: 829
  year: 1996
  ident: B40
  article-title: The lymphocyte chemoattractant SDF-1 is a ligand for LESTR/fusin and blocks HIV-1 entry.
  publication-title: Nature
  doi: 10.1038/382829a0
  contributor:
    fullname: Bleul
– volume: 72
  start-page: 2171
  year: 2017
  ident: B50
  article-title: HIV-1 strains belonging to large phylogenetic clusters show accelerated escape from integrase inhibitors in cell culture compared with viral isolates from singleton/small clusters.
  publication-title: J. Antimicrob. Chemother.
  doi: 10.1093/jac/dkx118
  contributor:
    fullname: Brenner
– volume: 437
  start-page: 482
  year: 2013
  ident: B505
  article-title: Proteomics analysis of autophagy-deficient Atg7-/- MEFs reveals a close relationship between F-actin and autophagy.
  publication-title: Biochem. Biophys. Res. Commun.
  doi: 10.1016/j.bbrc.2013.06.111
  contributor:
    fullname: Zhuo
– volume: 115
  start-page: 727
  year: 2003
  ident: B234
  article-title: The deacetylase HDAC6 regulates aggresome formation and cell viability in response to misfolded protein stress.
  publication-title: Cell
  doi: 10.1016/s0092-8674(03)00939-5
  contributor:
    fullname: Kawaguchi
– volume: 44
  start-page: 1636
  year: 2019
  ident: B283
  article-title: The dual role of HIV-1 gp120 V3 loop-induced autophagy in the survival and apoptosis of the primary rat hippocampal neurons.
  publication-title: Neurochem. Res.
  doi: 10.1007/s11064-019-02788-3
  contributor:
    fullname: Liu
– volume: 21
  start-page: 2412
  year: 2010
  ident: B22
  article-title: ADP-ribosylation factor 6 regulates mammalian myoblast fusion through phospholipase D1 and phosphatidylinositol 4,5-bisphosphate signaling pathways.
  publication-title: Mol. Biol. Cell
  doi: 10.1091/mbc.e09-12-1063
  contributor:
    fullname: Bach
– volume: 8
  start-page: 1682
  year: 2012
  ident: B286
  article-title: Recycling endosomes contribute to autophagosome formation.
  publication-title: Autophagy
  doi: 10.4161/auto.21486
  contributor:
    fullname: Longatti
– volume: 584
  start-page: 2635
  year: 2010
  ident: B240
  article-title: Fighting disease by selective autophagy of aggregate-prone proteins.
  publication-title: FEBS Lett.
  doi: 10.1016/j.febslet.2010.04.041
  contributor:
    fullname: Knaevelsrud
– volume: 16
  year: 2020
  ident: B399
  article-title: A non-canonical role for the autophagy machinery in anti-retroviral signaling mediated by TRIM5α.
  publication-title: PLoS Pathog.
  doi: 10.1371/journal.ppat.1009017
  contributor:
    fullname: Saha
– volume: 91
  year: 2017
  ident: B41
  article-title: Toll-like receptor 2 ligation enhances HIV-1 replication in activated CCR6+ CD4+ T cells by increasing virus entry and establishing a more permissive environment to infection.
  publication-title: J. Virol.
  doi: 10.1128/JVI.01402-16
  contributor:
    fullname: Bolduc
– volume: 54
  start-page: 625
  year: 2010
  ident: B496
  article-title: Alterations of CD4(+) CD25(+) Foxp3(+) regulatory T cells in HIV-infected slow progressors of former blood donors in China.
  publication-title: Microbiol. Immunol.
  doi: 10.1111/j.1348-0421.2010.00259.x
  contributor:
    fullname: Zhang
– volume: 54
  start-page: 354
  year: 2020
  ident: B265
  article-title: CRISPR/Cas9 technology in translational biomedicine.
  publication-title: Cell Physiol. Biochem.
  doi: 10.33594/000000224
  contributor:
    fullname: Leonova
– volume: 2
  year: 2009
  ident: B73
  article-title: mTORC1 phosphorylates the ULK1-mAtg13-FIP200 autophagy regulatory complex.
  publication-title: Sci. Signal.
  doi: 10.1126/scisignal.284pe51
  contributor:
    fullname: Chan
– volume: 7
  year: 2010
  ident: B19
  article-title: Revisiting HIV-1 uncoating.
  publication-title: Retrovirology
  doi: 10.1186/1742-4690-7-96
  contributor:
    fullname: Arhel
– volume: 190
  start-page: 1005
  year: 2010
  ident: B298
  article-title: An Atg9-containing compartment that functions in the early steps of autophagosome biogenesis.
  publication-title: J. Cell Biol.
  doi: 10.1083/jcb.200912089
  contributor:
    fullname: Mari
– volume: 7
  start-page: 115
  year: 2010
  ident: B349
  article-title: Autophagy protects against Sindbis virus infection of the central nervous system.
  publication-title: Cell Host Microbe
  doi: 10.1016/j.chom.2010.01.007
  contributor:
    fullname: Orvedahl
– volume: 48
  start-page: 24
  year: 2019
  ident: B23
  article-title: Phylogenies in ART: HIV reservoirs, HIV latency and drug resistance.
  publication-title: Curr. Opin. Pharmacol.
  doi: 10.1016/j.coph.2019.03.003
  contributor:
    fullname: Bandera
– volume: 20
  start-page: 305
  year: 2004
  ident: B443
  article-title: Effects of human immunodeficiency virus type 1 infection on CCR5 and CXCR4 coreceptor expression on CD4 T lymphocyte subsets in infants and adolescents.
  publication-title: AIDS Res. Hum. Retroviruses
  doi: 10.1089/088922204322996545
  contributor:
    fullname: Tuttle
– volume: 66
  start-page: 1354
  year: 1992
  ident: B409
  article-title: Biological phenotype of human immunodeficiency virus type 1 clones at different stages of infection: progression of disease is associated with a shift from monocytotropic to T-cell-tropic virus population.
  publication-title: J. Virol.
  doi: 10.1128/jvi.66.3.1354-1360.1992
  contributor:
    fullname: Schuitemaker
– volume: 9
  year: 2013
  ident: B389
  article-title: Sustained autophagy contributes to measles virus infectivity.
  publication-title: PLoS Pathog.
  doi: 10.1371/journal.ppat.1003599
  contributor:
    fullname: Richetta
– volume: 28
  start-page: 1204
  year: 2014
  ident: B466
  article-title: p62/SQSTM1 synergizes with autophagy for tumor growth in vivo.
  publication-title: Genes Dev.
  doi: 10.1101/gad.237354.113
  contributor:
    fullname: Wei
– volume: 306
  start-page: 1037
  year: 2004
  ident: B329
  article-title: Autophagy defends cells against invading group A Streptococcus.
  publication-title: Science
  doi: 10.1126/science.1103966
  contributor:
    fullname: Nakagawa
– volume: 327
  start-page: 167
  year: 2010
  ident: B205
  article-title: CRISPR/Cas, the immune system of bacteria and archaea.
  publication-title: Science
  doi: 10.1126/science.1179555
  contributor:
    fullname: Horvath
– volume: 86
  start-page: 367
  year: 1996
  ident: B282
  article-title: Homozygous defect in HIV-1 coreceptor accounts for resistance of some multiply-exposed individuals to HIV-1 infection.
  publication-title: Cell
  doi: 10.1016/s0092-8674(00)80110-5
  contributor:
    fullname: Liu
– volume: 6
  year: 2015
  ident: B124
  article-title: Differing roles of autophagy in HIV-associated neurocognitive impairment and encephalitis with implications for morphine co-exposure.
  publication-title: Front. Microbiol.
  doi: 10.3389/fmicb.2015.00653
  contributor:
    fullname: Dever
– volume: 25
  start-page: 811
  year: 2009
  ident: B172
  article-title: Altered bystander apoptosis induction and pathogenesis of enfuvirtide-resistant HIV type 1 Env mutants.
  publication-title: AIDS Res. Hum. Retroviruses
  doi: 10.1089/aid.2009.0010
  contributor:
    fullname: Garg
– volume: 217
  start-page: 2743
  year: 2018
  ident: B174
  article-title: Atg9 establishes Atg2-dependent contact sites between the endoplasmic reticulum and phagophores.
  publication-title: J. Cell Biol.
  doi: 10.1083/jcb.201710116
  contributor:
    fullname: Gómez-Sánchez
– volume: 7
  year: 2011
  ident: B180
  article-title: IRGM is a common target of RNA viruses that subvert the autophagy network.
  publication-title: PLoS Pathog.
  doi: 10.1371/journal.ppat.1002422
  contributor:
    fullname: Grégoire
– volume: 112
  start-page: 1809
  year: 2003
  ident: B376
  article-title: Promotion of tumorigenesis by heterozygous disruption of the beclin 1 autophagy gene.
  publication-title: J. Clin. Invest.
  doi: 10.1172/jci20039
  contributor:
    fullname: Qu
– volume: 540
  start-page: 448
  year: 2016
  ident: B387
  article-title: Receptor usage dictates HIV-1 restriction by human TRIM5α in dendritic cell subsets.
  publication-title: Nature
  doi: 10.1038/nature20567
  contributor:
    fullname: Ribeiro
– volume: 6
  start-page: 61
  year: 2018
  ident: B253
  article-title: Broadly neutralizing antibodies in HIV-1 treatment and prevention.
  publication-title: Ther. Adv. Vaccines Immunother.
  doi: 10.1177/2515135518800689
  contributor:
    fullname: Kumar
– volume: 199
  start-page: 419
  year: 2009
  ident: B278
  article-title: Genomewide association study of an AIDS-nonprogression cohort emphasizes the role played by HLA genes (ANRS genomewide association study 02).
  publication-title: J. Infect. Dis.
  doi: 10.1086/596067
  contributor:
    fullname: Limou
– volume: 19
  start-page: 1325
  year: 2017
  ident: B196
  article-title: CCR5-edited gene therapies for HIV cure: closing the door to viral entry.
  publication-title: Cytotherapy
  doi: 10.1016/j.jcyt.2017.05.013
  contributor:
    fullname: Haworth
– volume: 272
  start-page: 6854
  year: 1997
  ident: B154
  article-title: HIV-1 entry and macrophage inflammatory protein-1beta-mediated signaling are independent functions of the chemokine receptor CCR5.
  publication-title: J. Biol. Chem.
  doi: 10.1074/jbc.272.11.6854
  contributor:
    fullname: Farzan
– volume: 27
  start-page: 107
  year: 2011
  ident: B320
  article-title: The role of Atg proteins in autophagosome formation.
  publication-title: Annu. Rev. Cell Dev. Biol.
  doi: 10.1146/annurev-cellbio-092910-154005
  contributor:
    fullname: Mizushima
– volume: 6
  start-page: 151
  year: 2011
  ident: B492
  article-title: The sydney blood bank cohort: implications for viral fitness as a cause of elite control.
  publication-title: Curr. Opin. HIV AIDS
  doi: 10.1097/coh.0b013e3283454d5b
  contributor:
    fullname: Zaunders
– volume: 94
  start-page: 2060
  year: 1994
  ident: B454
  article-title: Macrophage-tropic variants initiate human immunodeficiency virus type 1 infection after sexual, parenteral, and vertical transmission.
  publication-title: J. Clin. Invest.
  doi: 10.1172/jci117560
  contributor:
    fullname: van’t Wout
– volume: 12
  start-page: 213
  year: 2010
  ident: B245
  article-title: The selective autophagy substrate p62 activates the stress responsive transcription factor Nrf2 through inactivation of Keap1.
  publication-title: Nat. Cell Biol.
  doi: 10.1038/ncb2021
  contributor:
    fullname: Komatsu
– volume: 84
  start-page: 7018
  year: 2010
  ident: B345
  article-title: Control of HIV-1 in elite suppressors despite ongoing replication and evolution in plasma virus.
  publication-title: J. Virol.
  doi: 10.1128/jvi.00548-10
  contributor:
    fullname: O’Connell
– volume: 77
  start-page: 2539
  year: 2003
  ident: B161
  article-title: Phosphatidylinositol 3-kinase regulates human immunodeficiency virus type 1 replication following viral entry in primary CD4+ T lymphocytes and macrophages.
  publication-title: J. Virol.
  doi: 10.1128/jvi.77.4.2539-2549.2003
  contributor:
    fullname: François
– volume: 7
  start-page: 3116
  year: 2007
  ident: B322
  article-title: Proteomic analysis of the cellular responses induced in uninfected immune cells by cell-expressed X4 HIV-1 envelope.
  publication-title: Proteomics
  doi: 10.1002/pmic.200700306
  contributor:
    fullname: Molina
– volume: 107
  start-page: 207
  year: 2001
  ident: B458
  article-title: Chemokine-receptor activation by env determines the mechanism of death in HIV-infected and uninfected T lymphocytes.
  publication-title: J. Clin. Invest.
  doi: 10.1172/jci11109
  contributor:
    fullname: Vlahakis
– volume: 371
  start-page: 880
  year: 2014
  ident: B249
  article-title: Shift of HIV tropism in stem-cell transplantation with CCR5 Delta32 mutation.
  publication-title: N. Engl. J. Med.
  doi: 10.1056/nejmc1405805
  contributor:
    fullname: Kordelas
– volume: 9
  year: 2020
  ident: B230
  article-title: Functional characterisation of the autophagy ATG12~5/16 complex in Dictyostelium discoideum.
  publication-title: Cells
  doi: 10.3390/cells9051179
  contributor:
    fullname: Karow
– volume: 127
  start-page: 882
  year: 1997
  ident: B113
  article-title: Association between CCR5 genotype and the clinical course of HIV-1 infection.
  publication-title: Ann. Intern. Med.
  doi: 10.7326/0003-4819-127-10-199711150-00004
  contributor:
    fullname: de Roda Husman
– volume: 9
  year: 2018
  ident: B65
  article-title: Antibodies and antibody derivatives: new partners in HIV eradication strategies.
  publication-title: Front. Immunol.
  doi: 10.3389/fimmu.2018.02429
  contributor:
    fullname: Carrillo
– volume: 524
  start-page: 361
  year: 2015
  ident: B357
  article-title: Transcriptional control of autophagy-lysosome function drives pancreatic cancer metabolism.
  publication-title: Nature
  doi: 10.1038/nature14587
  contributor:
    fullname: Perera
– volume: 79
  start-page: 14748
  year: 2005
  ident: B77
  article-title: Single-molecule analysis of human immunodeficiency virus type 1 gp120-receptor interactions in living cells.
  publication-title: J. Virol.
  doi: 10.1128/jvi.79.23.14748-14755.2005
  contributor:
    fullname: Chang
– volume: 442
  start-page: 221
  year: 1999
  ident: B439
  article-title: Colocalization of phospholipase D1 and GTP-binding-defective mutant of ADP-ribosylation factor 6 to endosomes and lysosomes.
  publication-title: FEBS Lett.
  doi: 10.1016/s0014-5793(98)01646-9
  contributor:
    fullname: Toda
– volume: 25
  start-page: 3357
  year: 2006
  ident: B45
  article-title: HDAC6-p97/VCP controlled polyubiquitin chain turnover.
  publication-title: EMBO J.
  doi: 10.1038/sj.emboj.7601210
  contributor:
    fullname: Boyault
– volume: 11
  start-page: 55
  year: 2010
  ident: B441
  article-title: Nod1 and Nod2 direct autophagy by recruiting ATG16L1 to the plasma membrane at the site of bacterial entry.
  publication-title: Nat. Immunol.
  doi: 10.1038/ni.1823
  contributor:
    fullname: Travassos
– volume: 261
  start-page: 1179
  year: 1993
  ident: B502
  article-title: Genotypic and phenotypic characterization of HIV-1 patients with primary infection.
  publication-title: Science
  doi: 10.1126/science.8356453
  contributor:
    fullname: Zhu
– volume: 24
  start-page: 522
  year: 2016
  ident: B462
  article-title: CRISPR-Cas9 can inhibit HIV-1 replication but NHEJ repair facilitates virus escape.
  publication-title: Mol. Ther.
  doi: 10.1038/mt.2016.24
  contributor:
    fullname: Wang
– volume: 16
  start-page: 554
  year: 2015
  ident: B13
  article-title: Innate immunity against HIV-1 infection.
  publication-title: Nat. Immunol.
  doi: 10.1038/ni.3157
  contributor:
    fullname: Altfeld
– volume: 15
  start-page: 2652
  year: 2004
  ident: B216
  article-title: PtdIns-specific MPR pathway association of a novel WD40 repeat protein, WIPI49.
  publication-title: Mol. Biol. Cell
  doi: 10.1091/mbc.e03-10-0732
  contributor:
    fullname: Jeffries
– volume: 26
  start-page: 281
  year: 2019
  ident: B350
  article-title: Atg2 mediates direct lipid transfer between membranes for autophagosome formation.
  publication-title: Nat. Struct. Mol. Biol.
  doi: 10.1038/s41594-019-0203-4
  contributor:
    fullname: Osawa
– volume: 372
  start-page: 786
  year: 2015
  ident: B290
  article-title: Viremic relapse after HIV-1 remission in a perinatally infected child.
  publication-title: N. Engl. J. Med.
  doi: 10.1056/nejmc1413931
  contributor:
    fullname: Luzuriaga
– volume: 8
  year: 2017
  ident: B293
  article-title: Mutations located outside the integrase gene can confer resistance to HIV-1 integrase strand transfer inhibitors.
  publication-title: mBio
  doi: 10.1128/mBio.00922-17
  contributor:
    fullname: Malet
– volume: 154
  start-page: 599
  year: 2001
  ident: B403
  article-title: Activation of ARF6 by ARNO stimulates epithelial cell migration through downstream activation of both Rac1 and phospholipase D.
  publication-title: J. Cell Biol.
  doi: 10.1083/jcb.200104019
  contributor:
    fullname: Santy
– volume: 27
  start-page: 1506
  year: 1997
  ident: B48
  article-title: Excessive degradation of intracellular protein in macrophages prevents presentation in the context of major histocompatibility complex class II molecules.
  publication-title: Eur. J. Immunol.
  doi: 10.1002/eji.1830270629
  contributor:
    fullname: Brazil
– volume: 17
  start-page: 775
  year: 2012
  ident: B74
  article-title: Regulation and function of uncoordinated-51 like kinase proteins.
  publication-title: Antioxid. Redox. Signal.
  doi: 10.1089/ars.2011.4396
  contributor:
    fullname: Chan
– volume: 25
  start-page: 717
  year: 2011
  ident: B486
  article-title: Pancreatic cancers require autophagy for tumor growth.
  publication-title: Genes Dev.
  doi: 10.1101/gad.2016111
  contributor:
    fullname: Yang
– volume: 16
  start-page: 956
  year: 2009
  ident: B285
  article-title: Vesicular trafficking and autophagosome formation.
  publication-title: Cell Death Differ.
  doi: 10.1038/cdd.2009.39
  contributor:
    fullname: Longatti
– volume: 41
  start-page: 1053
  year: 2005
  ident: B259
  article-title: HIV controllers: a homogeneous group of HIV-1-infected patients with spontaneous control of viral replication.
  publication-title: Clin. Infect. Dis.
  doi: 10.1086/433188
  contributor:
    fullname: Lambotte
– volume: 281
  start-page: 422
  year: 2017
  ident: B335
  article-title: Role of autophagy in HIV infection and pathogenesis.
  publication-title: J. Intern. Med.
  doi: 10.1111/joim.12596
  contributor:
    fullname: Nardacci
– volume: 10
  start-page: 458
  year: 2009
  ident: B333
  article-title: Dynamics and diversity in autophagy mechanisms: lessons from yeast.
  publication-title: Nat. Rev. Mol. Cell Biol.
  doi: 10.1038/nrm2708
  contributor:
    fullname: Nakatogawa
– volume: 218
  start-page: 1447
  year: 2018
  ident: B8
  article-title: Highly attenuated infection with a Vpr-deleted molecular clone of human immunodeficiency virus-1.
  publication-title: J. Infect. Dis.
  doi: 10.1093/infdis/jiy346
  contributor:
    fullname: Ali
– volume: 68
  start-page: 6889
  year: 2008
  ident: B272
  article-title: Efficient cross-presentation depends on autophagy in tumor cells.
  publication-title: Cancer Res.
  doi: 10.1158/0008-5472.can-08-0161
  contributor:
    fullname: Li
– volume: 7
  year: 2010
  ident: B401
  article-title: Evolution of the HIV-1 nef gene in HLA-B∗57 positive elite suppressors.
  publication-title: Retrovirology
  doi: 10.1186/1742-4690-7-94
  contributor:
    fullname: Salgado
– volume: 27
  start-page: 1185
  year: 2020
  ident: B304
  article-title: Atg9 is a lipid scramblase that mediates autophagosomal membrane expansion.
  publication-title: Nat. Struct. Mol. Biol.
  doi: 10.1038/s41594-020-00518-w
  contributor:
    fullname: Matoba
– volume: 139
  start-page: 49
  year: 1997
  ident: B378
  article-title: ADP-ribosylation factor 6 regulates a novel plasma membrane recycling pathway.
  publication-title: J. Cell Biol.
  doi: 10.1083/jcb.139.1.49
  contributor:
    fullname: Radhakrishna
– volume: 18
  start-page: 225
  year: 2018
  ident: B271
  article-title: Microglia and macrophages in brain homeostasis and disease.
  publication-title: Nat. Rev. Immunol.
  doi: 10.1038/nri.2017.125
  contributor:
    fullname: Li
– volume: 200
  start-page: 984
  year: 2009
  ident: B360
  article-title: Persistent low-level viremia in HIV-1 elite controllers and relationship to immunologic parameters.
  publication-title: J. Infect. Dis.
  doi: 10.1086/605446
  contributor:
    fullname: Pereyra
– volume: 21
  year: 2020
  ident: B46
  article-title: A conserved ATG2-GABARAP family interaction is critical for phagophore formation.
  publication-title: EMBO Rep.
  doi: 10.15252/embr.201948412
  contributor:
    fullname: Bozic
– volume: 4
  start-page: 151
  year: 2008
  ident: B239
  article-title: Guidelines for the use and interpretation of assays for monitoring autophagy in higher eukaryotes.
  publication-title: Autophagy
  doi: 10.4161/auto.5338
  contributor:
    fullname: Klionsky
– volume: 23
  start-page: 1163
  year: 2009
  ident: B178
  article-title: Prevalence and comparative characteristics of long-term nonprogressors and HIV controller patients in the french hospital database on HIV.
  publication-title: Aids
  doi: 10.1097/qad.0b013e32832b44c8
  contributor:
    fullname: Grabar
– volume: 12
  year: 2015
  ident: B504
  article-title: The CRISPR/Cas9 system inactivates latent HIV-1 proviral DNA.
  publication-title: Retrovirology
  doi: 10.1186/s12977-015-0150-z
  contributor:
    fullname: Zhu
– volume: 136
  start-page: 308
  ident: B495
  article-title: SEPA-1 mediates the specific recognition and degradation of P granule components by autophagy in C. elegans.
  publication-title: Cell
  doi: 10.1016/j.cell.2008.12.022
  contributor:
    fullname: Zhang
– volume: 12
  start-page: 401
  year: 2012
  ident: B471
  article-title: Deconvoluting the context-dependent role for autophagy in cancer.
  publication-title: Nat. Rev. Cancer
  doi: 10.1038/nrc3262
  contributor:
    fullname: White
– volume: 10
  year: 2019
  ident: B431
  article-title: Modeling HIV pre-exposure prophylaxis.
  publication-title: Front. Pharmacol.
  contributor:
    fullname: Straubinger
– volume: 530
  start-page: 51
  year: 2016
  ident: B289
  article-title: Persistent HIV-1 replication maintains the tissue reservoir during therapy.
  publication-title: Nature
  doi: 10.1038/nature16933
  contributor:
    fullname: Lorenzo-Redondo
– volume: 11
  start-page: 68
  year: 2016
  ident: B15
  article-title: HIV DNA set point is rapidly established in acute HIV infection and dramatically reduced by early ART.
  publication-title: EBioMedicine
  doi: 10.1016/j.ebiom.2016.07.024
  contributor:
    fullname: Ananworanich
– volume: 33
  start-page: 505
  year: 2009
  ident: B237
  article-title: A role for NBR1 in autophagosomal degradation of ubiquitinated substrates.
  publication-title: Mol. Cell.
  doi: 10.1016/j.molcel.2009.01.020
  contributor:
    fullname: Kirkin
– volume: 79
  start-page: 351
  year: 2006
  ident: B170
  article-title: HIV gp41-induced apoptosis is mediated by caspase-3-dependent mitochondrial depolarization, which is inhibited by HIV protease inhibitor nelfinavir.
  publication-title: J. Leukoc. Biol.
  doi: 10.1189/jlb.0805430
  contributor:
    fullname: Garg
– volume: 94
  start-page: 964
  year: 2016
  ident: B106
  article-title: Autophagy and proteasome interconnect to coordinate cross-presentation through MHC class I pathway in B cells.
  publication-title: Immunol. Cell Biol.
  doi: 10.1038/icb.2016.59
  contributor:
    fullname: Dasari
– volume: 5
  year: 2009
  ident: B480
  article-title: An initial step of GAS-containing autophagosome-like vacuoles formation requires Rab7.
  publication-title: PLoS Pathog.
  doi: 10.1371/journal.ppat.1000670
  contributor:
    fullname: Yamaguchi
– volume: 7
  year: 2010
  ident: B414
  article-title: HIV-1 gp120-mediated increases in IL-8 production in astrocytes are mediated through the NF-κB pathway and can be silenced by gp120-specific siRNA.
  publication-title: J. Neuroinflammation
  doi: 10.1186/1742-2094-7-96
  contributor:
    fullname: Shah
– volume: 99
  start-page: 13425
  year: 2002
  ident: B204
  article-title: Histone deacetylase 6 binds polyubiquitin through its zinc finger (PAZ domain) and copurifies with deubiquitinating enzymes.
  publication-title: Proc. Natl. Acad. Sci. U.S.A.
  doi: 10.1073/pnas.172511699
  contributor:
    fullname: Hook
– volume: 29
  start-page: 2594
  year: 2009
  ident: B99
  article-title: p65/RelA modulates BECN1 transcription and autophagy.
  publication-title: Mol. Cell. Biol.
  doi: 10.1128/mcb.01396-08
  contributor:
    fullname: Copetti
– volume: 198
  start-page: 219
  year: 2012
  ident: B482
  article-title: Atg9 vesicles are an important membrane source during early steps of autophagosome formation.
  publication-title: J. Cell Biol.
  doi: 10.1083/jcb.201202061
  contributor:
    fullname: Yamamoto
– volume: 126
  start-page: 432
  year: 2016
  ident: B255
  article-title: Hematopoietic stem cell transplantation for HIV cure.
  publication-title: J. Clin. Invest.
  doi: 10.1172/jci80563
  contributor:
    fullname: Kuritzkes
– volume: 136
  start-page: 61
  year: 1997
  ident: B279
  article-title: The autophagic and endocytic pathways converge at the nascent autophagic vacuoles.
  publication-title: J. Cell Biol.
  doi: 10.1083/jcb.136.1.61
  contributor:
    fullname: Liou
– volume: 14
  start-page: 417
  year: 2003
  ident: B336
  article-title: Convergence of non-clathrin- and clathrin-derived endosomes involves Arf6 inactivation and changes in phosphoinositides.
  publication-title: Mol. Biol. Cell
  doi: 10.1091/mbc.02-04-0053
  contributor:
    fullname: Naslavsky
– volume: 6
  year: 2009
  ident: B62
  article-title: Dynamic features of the selective pressure on the human immunodeficiency virus type 1 (HIV-1) gp120 CD4-binding site in a group of long term non progressor (LTNP) subjects.
  publication-title: Retrovirology
  doi: 10.1186/1742-4690-6-4
  contributor:
    fullname: Canducci
– volume: 20
  start-page: 1992
  year: 2009
  ident: B225
  article-title: ULK-Atg13-FIP200 complexes mediate mTOR signaling to the autophagy machinery.
  publication-title: Mol. Biol. Cell
  doi: 10.1091/mbc.e08-12-1249
  contributor:
    fullname: Jung
– volume: 116
  start-page: 697
  year: 2009
  ident: B302
  article-title: Autophagy in disease: a double-edged sword with therapeutic potential.
  publication-title: Clin. Sci.
  doi: 10.1042/cs20080508
  contributor:
    fullname: Martinet
– volume: 38
  start-page: 70
  year: 2019
  ident: B182
  article-title: The potential of engineered antibodies for HIV-1 therapy and cure.
  publication-title: Curr. Opin. Virol.
  doi: 10.1016/j.coviro.2019.07.007
  contributor:
    fullname: Grobben
– volume: 312
  start-page: 763
  year: 1984
  ident: B105
  article-title: The CD4 (T4) antigen is an essential component of the receptor for the AIDS retrovirus.
  publication-title: Nature
  doi: 10.1038/312763a0
  contributor:
    fullname: Dalgleish
– volume: 13
  start-page: 484
  year: 2015
  ident: B162
  article-title: HIV-1 assembly, release and maturation.
  publication-title: Nat. Rev. Microbiol.
  doi: 10.1038/nrmicro3490
  contributor:
    fullname: Freed
– volume: 161
  start-page: 319
  year: 2014
  ident: B198
  article-title: Antiretroviral-free HIV-1 remission and viral rebound after allogeneic stem cell transplantation: report of 2 cases.
  publication-title: Ann. Intern. Med.
  doi: 10.7326/m14-1027
  contributor:
    fullname: Henrich
– volume: 18
  start-page: 5850
  year: 1999
  ident: B484
  article-title: Mouse ULK2, a novel member of the UNC-51-like protein kinases: unique features of functional domains.
  publication-title: Oncogene
  doi: 10.1038/sj.onc.1202988
  contributor:
    fullname: Yan
– volume: 53
  start-page: 167
  year: 2014
  ident: B390
  article-title: Interactions between autophagy receptors and ubiquitin-like proteins form the molecular basis for selective autophagy.
  publication-title: Mol. Cell.
  doi: 10.1016/j.molcel.2013.12.014
  contributor:
    fullname: Rogov
– volume: 8
  start-page: 221
  year: 2006
  ident: B455
  article-title: Mechanisms of CD4 T-cell depletion triggered by HIV-1 viral proteins.
  publication-title: AIDS Rev.
  contributor:
    fullname: Varbanov
– volume: 86
  start-page: 2571
  year: 2012
  ident: B78
  article-title: The human cytomegalovirus protein TRS1 inhibits autophagy via its interaction with Beclin 1.
  publication-title: J. Virol.
  doi: 10.1128/jvi.05746-11
  contributor:
    fullname: Chaumorcel
– volume: 375
  start-page: 2037
  year: 2016
  ident: B24
  article-title: Effect of HIV Antibody VRC01 on Viral Rebound after Treatment Interruption.
  publication-title: N. Engl. J. Med.
  doi: 10.1056/NEJMoa1608243
  contributor:
    fullname: Bar
– volume: 77
  start-page: 7383
  year: 2003
  ident: B201
  article-title: Analysis of human immunodeficiency virus type 1 gene expression in latently infected resting CD4+ T lymphocytes in vivo.
  publication-title: J. Virol.
  doi: 10.1128/jvi.77.13.7383-7392.2003
  contributor:
    fullname: Hermankova
– volume: 29
  start-page: 969
  year: 2010
  ident: B264
  article-title: HDAC6 controls autophagosome maturation essential for ubiquitin-selective quality-control autophagy.
  publication-title: EMBO J.
  doi: 10.1038/emboj.2009.405
  contributor:
    fullname: Lee
– volume: 9
  start-page: 424
  year: 2013
  ident: B461
  article-title: Dissecting the role of the Atg12-Atg5-Atg16 complex during autophagosome formation.
  publication-title: Autophagy
  doi: 10.4161/auto.22931
  contributor:
    fullname: Walczak
– volume: 110
  start-page: 1935
  ident: B140
  article-title: Studies on the mechanisms of autophagy: maturation of the autophagic vacuole.
  publication-title: J. Cell Biol.
  doi: 10.1083/jcb.110.6.1935
  contributor:
    fullname: Dunn
– volume: 67
  start-page: 1772
  year: 1993
  ident: B98
  article-title: Increased viral burden and cytopathicity correlate temporally with CD4+ T-lymphocyte decline and clinical progression in human immunodeficiency virus type 1-infected individuals.
  publication-title: J. Virol.
  doi: 10.1128/jvi.67.4.1772-1777.1993
  contributor:
    fullname: Connor
– volume: 140
  start-page: 413
  year: 2013
  ident: B361
  article-title: Human β defensin-3 induces chemokines from monocytes and macrophages: diminished activity in cells from HIV-infected persons.
  publication-title: Immunology
  doi: 10.1111/imm.12148
  contributor:
    fullname: Petrov
– volume: 284
  start-page: 12297
  year: 2009
  ident: B166
  article-title: ULK1.ATG13.FIP200 complex mediates mTOR signaling and is essential for autophagy.
  publication-title: J. Biol. Chem.
  doi: 10.1074/jbc.m900573200
  contributor:
    fullname: Ganley
– volume: 9
  year: 2016
  ident: B114
  article-title: Trehalose inhibits solute carrier 2A (SLC2A) proteins to induce autophagy and prevent hepatic steatosis.
  publication-title: Sci. Signal.
  doi: 10.1126/scisignal.aac5472
  contributor:
    fullname: DeBosch
– volume: 166
  start-page: 208
  year: 2011
  ident: B472
  article-title: Immunogenic and tolerogenic signatures in human immunodeficiency virus (HIV)-infected controllers compared with progressors and a conversion strategy of virus control.
  publication-title: Clin. Exp. Immunol.
  doi: 10.1111/j.1365-2249.2011.04463.x
  contributor:
    fullname: Whittall
– volume: 4
  start-page: 273
  year: 2008
  ident: B147
  article-title: What is the role of autophagy in HIV-1 infection?
  publication-title: Autophagy
  doi: 10.4161/auto.5211
  contributor:
    fullname: Espert
– volume: 19
  start-page: 280
  year: 2016
  ident: B129
  article-title: Dissecting how CD4 T cells are lost during HIV infection.
  publication-title: Cell Host Microbe
  doi: 10.1016/j.chom.2016.02.012
  contributor:
    fullname: Doitsh
– volume: 278
  start-page: 1291
  year: 1997
  ident: B477
  article-title: Recovery of replication-competent HIV despite prolonged suppression of plasma viremia.
  publication-title: Science
  doi: 10.1126/science.278.5341.1291
  contributor:
    fullname: Wong
– volume: 10
  year: 2019
  ident: B301
  article-title: HIV-1 nef targets HDAC6 to assure viral production and virus infection.
  publication-title: Front. Microbiol.
  doi: 10.3389/fmicb.2019.02437
  contributor:
    fullname: Marrero-Hernández
– volume: 25
  start-page: 814
  year: 2018
  ident: B212
  article-title: A dynamic three-step mechanism drives the HIV-1 pre-fusion reaction.
  publication-title: Nat. Struct. Mol. Biol.
  doi: 10.1038/s41594-018-0113-x
  contributor:
    fullname: Iliopoulou
– volume: 278
  start-page: 1295
  year: 1997
  ident: B158
  article-title: Identification of a reservoir for HIV-1 in patients on highly active antiretroviral therapy.
  publication-title: Science
  doi: 10.1126/science.278.5341.1295
  contributor:
    fullname: Finzi
– volume: 272
  start-page: 1955
  year: 1996
  ident: B9
  article-title: CC CKR5: a RANTES, MIP-1alpha, MIP-1beta receptor as a fusion cofactor for macrophage-tropic HIV-1.
  publication-title: Science
  doi: 10.1126/science.272.5270.1955
  contributor:
    fullname: Alkhatib
– volume: 90
  start-page: 6148
  year: 2016
  ident: B343
  article-title: Long-term spontaneous control of HIV-1 is related to low frequency of infected cells and inefficient viral reactivation.
  publication-title: J. Virol.
  doi: 10.1128/jvi.00419-16
  contributor:
    fullname: Noel
– volume: 6
  start-page: 137
  year: 2009
  ident: B141
  article-title: Shigella phagocytic vacuolar membrane remnants participate in the cellular response to pathogen invasion and are regulated by autophagy.
  publication-title: Cell Host Microbe
  doi: 10.1016/j.chom.2009.07.005
  contributor:
    fullname: Dupont
– volume: 102
  start-page: 7922
  year: 2005
  ident: B121
  article-title: Autophagy promotes MHC class II presentation of peptides from intracellular source proteins.
  publication-title: Proc. Natl. Acad. Sci. U.S.A.
  doi: 10.1073/pnas.0501190102
  contributor:
    fullname: Dengjel
– volume: 2
  year: 2013
  ident: B173
  article-title: The ER-Golgi intermediate compartment is a key membrane source for the LC3 lipidation step of autophagosome biogenesis.
  publication-title: eLife
  doi: 10.7554/eLife.00947
  contributor:
    fullname: Ge
– volume: 206
  start-page: 1273
  year: 2009
  ident: B400
  article-title: Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection.
  publication-title: J. Exp. Med.
  doi: 10.1084/jem.20090378
  contributor:
    fullname: Salazar-Gonzalez
– volume: 275
  start-page: 21
  year: 2017
  ident: B464
  article-title: The HIV-1 envelope glycoprotein structure: nailing down a moving target.
  publication-title: Immunol. Rev.
  doi: 10.1111/imr.12507
  contributor:
    fullname: Ward
– volume: 14
  year: 2018
  ident: B177
  article-title: HIV control: is getting there the same as staying there?
  publication-title: PLoS Pathog.
  doi: 10.1371/journal.ppat.1007222
  contributor:
    fullname: Goulder
– volume: 29
  start-page: 1792
  year: 2010
  ident: B469
  article-title: LC3 and GATE-16/GABARAP subfamilies are both essential yet act differently in autophagosome biogenesis.
  publication-title: EMBO J.
  doi: 10.1038/emboj.2010.74
  contributor:
    fullname: Weidberg
– volume: 119
  start-page: 3888
  year: 2006
  ident: B490
  article-title: Starvation and ULK1-dependent cycling of mammalian Atg9 between the TGN and endosomes.
  publication-title: J. Cell Sci.
  doi: 10.1242/jcs.03172
  contributor:
    fullname: Young
– volume: 22
  start-page: 571
  year: 2005
  ident: B498
  article-title: Lamp-2a facilitates MHC class II presentation of cytoplasmic antigens.
  publication-title: Immunity
  doi: 10.1016/j.immuni.2005.03.009
  contributor:
    fullname: Zhou
– volume: 9
  year: 2018
  ident: B68
  article-title: Viral characteristics associated with the clinical nonprogressor phenotype are inherited by viruses from a cluster of HIV-1 elite controllers.
  publication-title: mBio
  doi: 10.1128/mBio.02338-17
  contributor:
    fullname: Casado
– volume: 10
  start-page: 1380
  year: 2014
  ident: B459
  article-title: Combined autophagy and proteasome inhibition: a phase 1 trial of hydroxychloroquine and bortezomib in patients with relapsed/refractory myeloma.
  publication-title: Autophagy
  doi: 10.4161/auto.29264
  contributor:
    fullname: Vogl
– volume: 281
  start-page: 36303
  year: 2006
  ident: B155
  article-title: Microtubules support production of starvation-induced autophagosomes but not their targeting and fusion with lysosomes.
  publication-title: J. Biol. Chem.
  doi: 10.1074/jbc.m607031200
  contributor:
    fullname: Fass
– volume: 10
  year: 2020
  ident: B67
  article-title: Permanent control of HIV-1 pathogenesis in exceptional elite controllers: a model of spontaneous cure.
  publication-title: Sci. Rep.
  doi: 10.1038/s41598-020-58696-y
  contributor:
    fullname: Casado
– volume: 3
  year: 2012
  ident: B32
  article-title: AKTivation of PI3K/AKT/mTOR signaling pathway by KSHV.
  publication-title: Front. Immunol.
  contributor:
    fullname: Bhatt
– volume: 568
  start-page: 244
  year: 2019
  ident: B186
  article-title: HIV-1 remission following CCR5Δ32/Δ32 haematopoietic stem-cell transplantation.
  publication-title: Nature
  doi: 10.1038/s41586-019-1027-4
  contributor:
    fullname: Gupta
– volume: 382
  start-page: 722
  year: 1996
  ident: B402
  article-title: Resistance to HIV-1 infection in caucasian individuals bearing mutant alleles of the CCR-5 chemokine receptor gene.
  publication-title: Nature
  doi: 10.1038/382722a0
  contributor:
    fullname: Samson
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Snippet HIV/AIDS is still a global threat despite the notable efforts made by the scientific and health communities to understand viral infection, to design new drugs...
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SubjectTerms autophagy
cell-death
early infection
Env signaling
HIV-1
Life Sciences
Microbiology
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Title The Interplay of HIV and Autophagy in Early Infection
URI https://www.ncbi.nlm.nih.gov/pubmed/33995324
https://search.proquest.com/docview/2528433997
https://hal.science/hal-03405215
https://pubmed.ncbi.nlm.nih.gov/PMC8113651
https://doaj.org/article/05cd32a89c824ee198a38a1e6452d653
Volume 12
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