Rapid Molecular Tests for Detecting Respiratory Pathogens Reduced the Use of Antibiotics in Children
Multiplex polymerase chain reaction (mPCR) is increasingly being used to diagnose infections caused by respiratory pathogens in pediatric inpatient facilities. mPCR assays detect a broader array of viruses, with higher specificity and sensitivity and faster turnaround than previous assays. We adapte...
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Published in | Antibiotics (Basel) Vol. 10; no. 3; p. 283 |
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Abstract | Multiplex polymerase chain reaction (mPCR) is increasingly being used to diagnose infections caused by respiratory pathogens in pediatric inpatient facilities. mPCR assays detect a broader array of viruses, with higher specificity and sensitivity and faster turnaround than previous assays. We adapted the FilmArray Respiratory Panel (FA-RP) for diagnosing respiratory infections. FA-RP is an in vitro mPCR assay that simultaneously and rapidly (in about 1 h) detects 20 pathogens directly from respiratory specimens. Here, we studied the clinical efficacy of FA-RP in children who underwent testing for respiratory pathogens at Yeungnam University Hospital from November 2015 to August 2018. From November 2015 to June 2016, routine mPCR testing was performed on nasopharyngeal swabs using the routine mPCR kit. From November 2016 to July 2018, mPCR testing was performed using FA-RP. A total of 321 tests by routine mPCR and 594 tests by FA-RP were included. The positive detection rates for routine mPCR and FA-RP were 71.3% and 83.3%, respectively. FA-RP reduced the lead time, waiting time, turnaround time, intravenous (IV) antibiotic use, and length of hospital stay for pediatric patients. The decreased use of antibiotics is expected to reduce antibiotic resistance in children. |
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AbstractList | Multiplex polymerase chain reaction (mPCR) is increasingly being used to diagnose infections caused by respiratory pathogens in pediatric inpatient facilities. mPCR assays detect a broader array of viruses, with higher specificity and sensitivity and faster turnaround than previous assays. We adapted the FilmArray Respiratory Panel (FA-RP) for diagnosing respiratory infections. FA-RP is an in vitro mPCR assay that simultaneously and rapidly (in about 1 h) detects 20 pathogens directly from respiratory specimens. Here, we studied the clinical efficacy of FA-RP in children who underwent testing for respiratory pathogens at Yeungnam University Hospital from November 2015 to August 2018. From November 2015 to June 2016, routine mPCR testing was performed on nasopharyngeal swabs using the routine mPCR kit. From November 2016 to July 2018, mPCR testing was performed using FA-RP. A total of 321 tests by routine mPCR and 594 tests by FA-RP were included. The positive detection rates for routine mPCR and FA-RP were 71.3% and 83.3%, respectively. FA-RP reduced the lead time, waiting time, turnaround time, intravenous (IV) antibiotic use, and length of hospital stay for pediatric patients. The decreased use of antibiotics is expected to reduce antibiotic resistance in children. Multiplex polymerase chain reaction (mPCR) is increasingly being used to diagnose infections caused by respiratory pathogens in pediatric inpatient facilities. mPCR assays detect a broader array of viruses, with higher specificity and sensitivity and faster turnaround than previous assays. We adapted the FilmArray Respiratory Panel (FA-RP) for diagnosing respiratory infections. FA-RP is an in vitro mPCR assay that simultaneously and rapidly (in about 1 h) detects 20 pathogens directly from respiratory specimens. Here, we studied the clinical efficacy of FA-RP in children who underwent testing for respiratory pathogens at Yeungnam University Hospital from November 2015 to August 2018. From November 2015 to June 2016, routine mPCR testing was performed on nasopharyngeal swabs using the routine mPCR kit. From November 2016 to July 2018, mPCR testing was performed using FA-RP. A total of 321 tests by routine mPCR and 594 tests by FA-RP were included. The positive detection rates for routine mPCR and FA-RP were 71.3% and 83.3%, respectively. FA-RP reduced the lead time, waiting time, turnaround time, intravenous (IV) antibiotic use, and length of hospital stay for pediatric patients. The decreased use of antibiotics is expected to reduce antibiotic resistance in children.Multiplex polymerase chain reaction (mPCR) is increasingly being used to diagnose infections caused by respiratory pathogens in pediatric inpatient facilities. mPCR assays detect a broader array of viruses, with higher specificity and sensitivity and faster turnaround than previous assays. We adapted the FilmArray Respiratory Panel (FA-RP) for diagnosing respiratory infections. FA-RP is an in vitro mPCR assay that simultaneously and rapidly (in about 1 h) detects 20 pathogens directly from respiratory specimens. Here, we studied the clinical efficacy of FA-RP in children who underwent testing for respiratory pathogens at Yeungnam University Hospital from November 2015 to August 2018. From November 2015 to June 2016, routine mPCR testing was performed on nasopharyngeal swabs using the routine mPCR kit. From November 2016 to July 2018, mPCR testing was performed using FA-RP. A total of 321 tests by routine mPCR and 594 tests by FA-RP were included. The positive detection rates for routine mPCR and FA-RP were 71.3% and 83.3%, respectively. FA-RP reduced the lead time, waiting time, turnaround time, intravenous (IV) antibiotic use, and length of hospital stay for pediatric patients. The decreased use of antibiotics is expected to reduce antibiotic resistance in children. |
Author | Kim, Sae Yoon Choi, Kwang Hae Jang, Kyung Mi Lee, Jong Ho Kim, Yu Kyung Lee, Young Hwan Lee, Jae Min Ahn, Ji Young Hau, Yong Sauk |
AuthorAffiliation | 3 Department of Pediatrics, College of Medicine, Yeungnam University, Daegu 42415, Korea; sysnow88@hanmail.net (S.Y.K.); jy4413@gmail.com (J.Y.A.); choi8819@gmail.com (K.H.C.); yhlee@med.yu.ac.kr (Y.H.L.); fortune001j@gmail.com (K.M.J.) 2 Department of Laboratory Medicine, Yeungnam University College of Medicine, Daegu 42415, Korea; leejongho@ynu.ac.kr 1 Department of Clinical Pathology, School of Medicine, Kyungpook National University, Daegu 41944, Korea; kimyg@knu.ac.kr 4 Department of Business Administration, School of Business, Yeungnam University, Gyeongsan 38541, Korea; augustine@yu.ac.kr |
AuthorAffiliation_xml | – name: 4 Department of Business Administration, School of Business, Yeungnam University, Gyeongsan 38541, Korea; augustine@yu.ac.kr – name: 1 Department of Clinical Pathology, School of Medicine, Kyungpook National University, Daegu 41944, Korea; kimyg@knu.ac.kr – name: 2 Department of Laboratory Medicine, Yeungnam University College of Medicine, Daegu 42415, Korea; leejongho@ynu.ac.kr – name: 3 Department of Pediatrics, College of Medicine, Yeungnam University, Daegu 42415, Korea; sysnow88@hanmail.net (S.Y.K.); jy4413@gmail.com (J.Y.A.); choi8819@gmail.com (K.H.C.); yhlee@med.yu.ac.kr (Y.H.L.); fortune001j@gmail.com (K.M.J.) |
Author_xml | – sequence: 1 givenname: Yu Kyung orcidid: 0000-0002-4699-8502 surname: Kim fullname: Kim, Yu Kyung organization: Department of Clinical Pathology, School of Medicine, Kyungpook National University, Daegu 41944, Korea – sequence: 2 givenname: Jong Ho orcidid: 0000-0002-6837-838X surname: Lee fullname: Lee, Jong Ho organization: Department of Laboratory Medicine, Yeungnam University College of Medicine, Daegu 42415, Korea – sequence: 3 givenname: Sae Yoon surname: Kim fullname: Kim, Sae Yoon organization: Department of Pediatrics, College of Medicine, Yeungnam University, Daegu 42415, Korea – sequence: 4 givenname: Ji Young orcidid: 0000-0003-2045-1629 surname: Ahn fullname: Ahn, Ji Young organization: Department of Pediatrics, College of Medicine, Yeungnam University, Daegu 42415, Korea – sequence: 5 givenname: Kwang Hae orcidid: 0000-0003-3169-1193 surname: Choi fullname: Choi, Kwang Hae organization: Department of Pediatrics, College of Medicine, Yeungnam University, Daegu 42415, Korea – sequence: 6 givenname: Young Hwan surname: Lee fullname: Lee, Young Hwan organization: Department of Pediatrics, College of Medicine, Yeungnam University, Daegu 42415, Korea – sequence: 7 givenname: Kyung Mi orcidid: 0000-0002-2226-9268 surname: Jang fullname: Jang, Kyung Mi organization: Department of Pediatrics, College of Medicine, Yeungnam University, Daegu 42415, Korea – sequence: 8 givenname: Yong Sauk orcidid: 0000-0001-9817-4815 surname: Hau fullname: Hau, Yong Sauk organization: Department of Business Administration, School of Business, Yeungnam University, Gyeongsan 38541, Korea – sequence: 9 givenname: Jae Min orcidid: 0000-0001-6822-1051 surname: Lee fullname: Lee, Jae Min organization: Department of Pediatrics, College of Medicine, Yeungnam University, Daegu 42415, Korea |
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Cites_doi | 10.1016/S0140-6736(14)61682-2 10.1542/peds.2010-2779 10.1056/NEJMoa1405870 10.7754/Clin.Lab.2018.180411 10.1007/s15010-017-1009-0 10.1056/NEJMc1504028 10.1002/ppul.23030 10.1128/AAC.02039-13 10.1586/14737159.2013.848794 10.1542/hpeds.2017-0059 10.5334/aogh.2411 10.1016/j.cmi.2019.09.013 10.1056/NEJMoa1500245 10.1038/s41598-018-30673-6 10.1128/CMR.00037-07 10.1016/j.jgar.2020.08.022 10.1542/peds.2007-1392 10.1093/cid/ciw118 10.1007/s11908-020-0711-8 10.1016/j.jpeds.2008.07.043 10.3343/alm.2017.37.5.408 10.1371/journal.pone.0172809 10.1016/S0002-9343(01)01058-0 10.1183/13993003.00555-2018 10.1016/j.jpeds.2016.02.050 |
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Keywords | antimicrobials respiratory pathogen acute respiratory infection multiplex polymerase chain reaction FilmArray Respiratory Panel |
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SubjectTerms | acute respiratory infection Antibiotic resistance Antibiotics antimicrobials Assaying Bacteria Children Drug resistance FilmArray Respiratory Panel Hospitalization Infections Intravenous administration Laboratories Lead time Length of stay multiplex polymerase chain reaction Pathogens Patients Pediatrics Polymerase chain reaction Respiratory diseases respiratory pathogen Respiratory syncytial virus Viruses |
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Title | Rapid Molecular Tests for Detecting Respiratory Pathogens Reduced the Use of Antibiotics in Children |
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