Detection of diagnostic and prognostic methylation-based signatures in liquid biopsy specimens from patients with meningiomas
Recurrence of meningiomas is unpredictable by current invasive methods based on surgically removed specimens. Identification of patients likely to recur using noninvasive approaches could inform treatment strategy, whether intervention or monitoring. In this study, we analyze the DNA methylation lev...
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Published in | Nature communications Vol. 14; no. 1; pp. 5669 - 19 |
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Main Authors | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
Format | Journal Article |
Language | English |
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England
Nature Publishing Group
13.09.2023
Nature Publishing Group UK Nature Portfolio |
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Abstract | Recurrence of meningiomas is unpredictable by current invasive methods based on surgically removed specimens. Identification of patients likely to recur using noninvasive approaches could inform treatment strategy, whether intervention or monitoring. In this study, we analyze the DNA methylation levels in blood (serum and plasma) and tissue samples from 155 meningioma patients, compared to other central nervous system tumor and non-tumor entities. We discover DNA methylation markers unique to meningiomas and use artificial intelligence to create accurate and universal models for identifying and predicting meningioma recurrence, using either blood or tissue samples. Here we show that liquid biopsy is a potential noninvasive and reliable tool for diagnosing and predicting outcomes in meningioma patients. This approach can improve personalized management strategies for these patients. |
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AbstractList | Recurrence of meningiomas is unpredictable by current invasive methods based on surgically removed specimens. Identification of patients likely to recur using noninvasive approaches could inform treatment strategy, whether intervention or monitoring. In this study, we analyze the DNA methylation levels in blood (serum and plasma) and tissue samples from 155 meningioma patients, compared to other central nervous system tumor and non-tumor entities. We discover DNA methylation markers unique to meningiomas and use artificial intelligence to create accurate and universal models for identifying and predicting meningioma recurrence, using either blood or tissue samples. Here we show that liquid biopsy is a potential noninvasive and reliable tool for diagnosing and predicting outcomes in meningioma patients. This approach can improve personalized management strategies for these patients. Recurrence of meningiomas is unpredictable by current invasive methods based on surgically removed specimens. Identification of patients likely to recur using noninvasive approaches could inform treatment strategy, whether intervention or monitoring. In this study, we analyze the DNA methylation levels in blood (serum and plasma) and tissue samples from 155 meningioma patients, compared to other central nervous system tumor and non-tumor entities. We discover DNA methylation markers unique to meningiomas and use artificial intelligence to create accurate and universal models for identifying and predicting meningioma recurrence, using either blood or tissue samples. Here we show that liquid biopsy is a potential noninvasive and reliable tool for diagnosing and predicting outcomes in meningioma patients. This approach can improve personalized management strategies for these patients.Recurrence of meningiomas is unpredictable by current methods based on surgically removed specimens, and identification of patients likely to recur could inform treatment strategy. Here, the authors analysed DNA methylation in liquid biopsy specimens from meningioma patients to help classify recurrence risk noninvasively even before surgery. Abstract Recurrence of meningiomas is unpredictable by current invasive methods based on surgically removed specimens. Identification of patients likely to recur using noninvasive approaches could inform treatment strategy, whether intervention or monitoring. In this study, we analyze the DNA methylation levels in blood (serum and plasma) and tissue samples from 155 meningioma patients, compared to other central nervous system tumor and non-tumor entities. We discover DNA methylation markers unique to meningiomas and use artificial intelligence to create accurate and universal models for identifying and predicting meningioma recurrence, using either blood or tissue samples. Here we show that liquid biopsy is a potential noninvasive and reliable tool for diagnosing and predicting outcomes in meningioma patients. This approach can improve personalized management strategies for these patients. Recurrence of meningiomas is unpredictable by current invasive methods based on surgically removed specimens. Identification of patients likely to recur using noninvasive approaches could inform treatment strategy, whether intervention or monitoring. In this study, we analyze the DNA methylation levels in blood (serum and plasma) and tissue samples from 155 meningioma patients, compared to other central nervous system tumor and non-tumor entities. We discover DNA methylation markers unique to meningiomas and use artificial intelligence to create accurate and universal models for identifying and predicting meningioma recurrence, using either blood or tissue samples. Here we show that liquid biopsy is a potential noninvasive and reliable tool for diagnosing and predicting outcomes in meningioma patients. This approach can improve personalized management strategies for these patients. Recurrence of meningiomas is unpredictable by current methods based on surgically removed specimens, and identification of patients likely to recur could inform treatment strategy. Here, the authors analysed DNA methylation in liquid biopsy specimens from meningioma patients to help classify recurrence risk noninvasively even before surgery. Recurrence of meningiomas is unpredictable by current invasive methods based on surgically removed specimens. Identification of patients likely to recur using noninvasive approaches could inform treatment strategy, whether intervention or monitoring. In this study, we analyze the DNA methylation levels in blood (serum and plasma) and tissue samples from 155 meningioma patients, compared to other central nervous system tumor and non-tumor entities. We discover DNA methylation markers unique to meningiomas and use artificial intelligence to create accurate and universal models for identifying and predicting meningioma recurrence, using either blood or tissue samples. Here we show that liquid biopsy is a potential noninvasive and reliable tool for diagnosing and predicting outcomes in meningioma patients. This approach can improve personalized management strategies for these patients.Recurrence of meningiomas is unpredictable by current invasive methods based on surgically removed specimens. Identification of patients likely to recur using noninvasive approaches could inform treatment strategy, whether intervention or monitoring. In this study, we analyze the DNA methylation levels in blood (serum and plasma) and tissue samples from 155 meningioma patients, compared to other central nervous system tumor and non-tumor entities. We discover DNA methylation markers unique to meningiomas and use artificial intelligence to create accurate and universal models for identifying and predicting meningioma recurrence, using either blood or tissue samples. Here we show that liquid biopsy is a potential noninvasive and reliable tool for diagnosing and predicting outcomes in meningioma patients. This approach can improve personalized management strategies for these patients. Abstract Recurrence of meningiomas is unpredictable by current invasive methods based on surgically removed specimens. Identification of patients likely to recur using noninvasive approaches could inform treatment strategy, whether intervention or monitoring. In this study, we analyze the DNA methylation levels in blood (serum and plasma) and tissue samples from 155 meningioma patients, compared to other central nervous system tumor and non-tumor entities. We discover DNA methylation markers unique to meningiomas and use artificial intelligence to create accurate and universal models for identifying and predicting meningioma recurrence, using either blood or tissue samples. Here we show that liquid biopsy is a potential noninvasive and reliable tool for diagnosing and predicting outcomes in meningioma patients. This approach can improve personalized management strategies for these patients. |
ArticleNumber | 5669 |
Author | Thomas, Bartow Rock, Jack Tundo, Kelly M Poisson, Laila M Lee, Ian Y Kalkanis, Steven Hasselbach, Laura A Podolsky-Gondim, Guilherme G Carlotti, Jr, Carlos G Malta, Tathiane M Herrgott, Grayson A Snyder, James M Asmaro, Karam P Zhang, Jiaqi Mosella, Maritza S Castro, Ana Valeria Pawloski, Jacob Cannella, Cara E Transou, Andrea Mukherjee, Abir Newaz, Rehnuma Sabedot, Thais S deCarvalho, Ana C Tirapelli, Daniela P C Noushmehr, Houtan Rosenblum, Mark Chitale, Dhananjay Mikkelsen, Tom Nelson, Kevin She, Ruicong Morosini, Natalia Francisco, Victor Weisenberger, Daniel J Robin, Adam M Walbert, Tobias |
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MI, USA – sequence: 11 givenname: Cara E surname: Cannella fullname: Cannella, Cara E organization: Department of Public Health, Biostatistics, Henry Ford Health, Detroit, MI, USA – sequence: 12 givenname: Kevin surname: Nelson fullname: Nelson, Kevin organization: Department of Neurosurgery, Omics Laboratory, Hermelin Brain Tumor Center, Henry Ford Health, Detroit, MI, USA – sequence: 13 givenname: Bartow surname: Thomas fullname: Thomas, Bartow organization: Department of Neurosurgery, Omics Laboratory, Hermelin Brain Tumor Center, Henry Ford Health, Detroit, MI, USA – sequence: 14 givenname: Ana C orcidid: 0000-0003-1183-4548 surname: deCarvalho fullname: deCarvalho, Ana C organization: Department of Neurosurgery, Omics Laboratory, Hermelin Brain Tumor Center, Henry Ford Health, Detroit, MI, USA – sequence: 15 givenname: Laura A surname: Hasselbach fullname: Hasselbach, Laura A organization: Department of Neurosurgery, Omics Laboratory, Hermelin Brain Tumor Center, Henry Ford Health, Detroit, MI, USA – sequence: 16 givenname: Kelly M surname: Tundo fullname: Tundo, Kelly M organization: Department of Neurosurgery, Omics Laboratory, Hermelin Brain Tumor Center, Henry Ford Health, Detroit, MI, USA – sequence: 17 givenname: Rehnuma surname: Newaz fullname: Newaz, Rehnuma organization: Department of Neurosurgery, Omics Laboratory, Hermelin Brain Tumor Center, Henry Ford Health, Detroit, MI, USA – sequence: 18 givenname: Andrea surname: Transou fullname: Transou, Andrea organization: Department of Neurosurgery, Omics Laboratory, Hermelin Brain Tumor Center, Henry Ford Health, Detroit, MI, USA – sequence: 19 givenname: Natalia surname: Morosini fullname: Morosini, Natalia organization: Department of Neurosurgery, Omics Laboratory, Hermelin Brain Tumor Center, Henry Ford Health, Detroit, MI, USA – sequence: 20 givenname: Victor surname: Francisco fullname: Francisco, Victor organization: Department of Neurosurgery, Omics Laboratory, Hermelin Brain Tumor Center, 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Paulo, Ribeirao Preto, SP, Brazil – sequence: 31 givenname: Daniel J orcidid: 0000-0001-8303-2603 surname: Weisenberger fullname: Weisenberger, Daniel J organization: Department of Biochemistry and Molecular Medicine, Keck School of Medicine, University of Southern California, Los Angeles, CA, 90033, USA – sequence: 32 givenname: Carlos G surname: Carlotti, Jr fullname: Carlotti, Jr, Carlos G organization: Department of Neurosurgery, Ribeirao Preto Medical School, University of Sao Paulo, Ribeirao Preto, SP, Brazil – sequence: 33 givenname: Jack surname: Rock fullname: Rock, Jack organization: Department of Neurosurgery, Omics Laboratory, Hermelin Brain Tumor Center, Henry Ford Health, Detroit, MI, USA – sequence: 34 givenname: Ana Valeria orcidid: 0000-0003-1625-0015 surname: Castro fullname: Castro, Ana Valeria email: acastro1@hfhs.org, acastro1@hfhs.org organization: Department of Physiology, Michigan State University, E. Lansing, MI, USA. acastro1@hfhs.org – sequence: 35 givenname: Houtan surname: Noushmehr fullname: Noushmehr, Houtan email: hnoushm1@hfhs.org, hnoushm1@hfhs.org organization: Department of Physiology, Michigan State University, E. Lansing, MI, USA. hnoushm1@hfhs.org |
BackLink | https://www.ncbi.nlm.nih.gov/pubmed/37704607$$D View this record in MEDLINE/PubMed |
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CitedBy_id | crossref_primary_10_1016_j_neuint_2023_105643 crossref_primary_10_1016_j_heliyon_2024_e25571 crossref_primary_10_1016_j_csbj_2024_01_024 crossref_primary_10_3389_fonc_2024_1395985 crossref_primary_10_3390_ijms25084195 crossref_primary_10_3389_fneur_2023_1321895 |
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Snippet | Recurrence of meningiomas is unpredictable by current invasive methods based on surgically removed specimens. Identification of patients likely to recur using... Abstract Recurrence of meningiomas is unpredictable by current invasive methods based on surgically removed specimens. Identification of patients likely to... Abstract Recurrence of meningiomas is unpredictable by current invasive methods based on surgically removed specimens. Identification of patients likely to... |
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SubjectTerms | Artificial Intelligence Biopsy Blood Brain cancer Central nervous system DNA Methylation Humans Liquid Biopsy Meningeal Neoplasms - diagnosis Meningeal Neoplasms - genetics Meningioma Meningioma - diagnosis Meningioma - genetics Patients Prognosis Strategy Tumors |
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Title | Detection of diagnostic and prognostic methylation-based signatures in liquid biopsy specimens from patients with meningiomas |
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