Genome Analysis of a Novel Tembusu Virus in Taiwan

We identified and isolated a novel Tembusu virus (TMUV) strain TP1906 (TMUV-TP1906) from a Culex annulus mosquito pool collected from the northern part of Taiwan in 2019. The TMUV-TP1906 genome is a 10,990-nucleotide-long, positive-sense, single-stranded RNA, consisting of a single open reading fram...

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Published inViruses Vol. 12; no. 5; p. 567
Main Authors Peng, Shih-Huan, Su, Chien-Ling, Chang, Mei-Chun, Hu, Huai-Chin, Yang, Su-Lin, Shu, Pei-Yun
Format Journal Article
LanguageEnglish
Published Switzerland MDPI AG 22.05.2020
MDPI
Subjects
3' Untranslated regions
Animals
Base Sequence
Cell culture
Cell Line
Chickens
Chlorocebus aethiops
Culicidae - virology
Deoxyribonucleic acid
DNA
Encephalitis
Fibroblasts
Flavivirus - classification
Flavivirus - genetics
Flavivirus - growth & development
Flavivirus - isolation & purification
flavivirus 3′-UTR variable region
Flavivirus Infections - veterinary
Flavivirus Infections - virology
Flaviviruses
Genetic aspects
Genome, Viral
Genomes
Host range
Host Specificity
Kinetics
Mosquitoes
Nucleotide sequence
Open Reading Frames
Phylogeny
Polyproteins - genetics
Poultry Diseases - virology
Ribonucleic acid
RNA
Sitiawan virus
Taiwan
Tembusu virus
Variable region
Vero Cells
Virulence
Viruses
Wetlands
Whole Genome Sequencing
Taiwan
Malaysia
United States > US
China
Germany
flavivirus 3′-UTR variable region
Tembusu virus
Sitiawan virus
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Abstract We identified and isolated a novel Tembusu virus (TMUV) strain TP1906 (TMUV-TP1906) from a Culex annulus mosquito pool collected from the northern part of Taiwan in 2019. The TMUV-TP1906 genome is a 10,990-nucleotide-long, positive-sense, single-stranded RNA, consisting of a single open reading frame (ORF) encoding a polyprotein of 3425 amino acids, with 5′ and 3′ untranslated regions (UTRs) of 94 and 618 nucleotides, respectively. The nucleotide sequence of the TMUV-TP1906 of ORF exhibited 93.71% and 91.27% similarity with Sitiawan virus (STWV) and the TMUV prototype strain MM1775, respectively. The 3′-UTR variable region of TMUV-TP1906 showed nucleotide sequence divergence with other TMUV strains. Phylogenetic analysis of the complete ORF and polyprotein sequences revealed that TMUV-TP1906 is most closely related to STWV which causes encephalitis and retarded growth in chickens. We found that the TMUV-TP1906 caused a cytopathic effect (CPE) in the DF-1 chicken fibroblast cell line, while no apparent CPE was observed in Vero and C6/36 cells. In this study, we first identified and isolated a novel TMUV strain in Taiwan. In addition, to our knowledge, it is the first time that the TMUV strain was isolated from the Cx. annulus mosquitoes. Further study is warranted to investigate the host range and virulence of TMUV-TP1906.
AbstractList We identified and isolated a novel Tembusu virus (TMUV) strain TP1906 (TMUV-TP1906) from a Culex annulus mosquito pool collected from the northern part of Taiwan in 2019. The TMUV-TP1906 genome is a 10,990-nucleotide-long, positive-sense, single-stranded RNA, consisting of a single open reading frame (ORF) encoding a polyprotein of 3425 amino acids, with 5′ and 3′ untranslated regions (UTRs) of 94 and 618 nucleotides, respectively. The nucleotide sequence of the TMUV-TP1906 of ORF exhibited 93.71% and 91.27% similarity with Sitiawan virus (STWV) and the TMUV prototype strain MM1775, respectively. The 3′-UTR variable region of TMUV-TP1906 showed nucleotide sequence divergence with other TMUV strains. Phylogenetic analysis of the complete ORF and polyprotein sequences revealed that TMUV-TP1906 is most closely related to STWV which causes encephalitis and retarded growth in chickens. We found that the TMUV-TP1906 caused a cytopathic effect (CPE) in the DF-1 chicken fibroblast cell line, while no apparent CPE was observed in Vero and C6/36 cells. In this study, we first identified and isolated a novel TMUV strain in Taiwan. In addition, to our knowledge, it is the first time that the TMUV strain was isolated from the Cx. annulus mosquitoes. Further study is warranted to investigate the host range and virulence of TMUV-TP1906.
We identified and isolated a novel Tembusu virus (TMUV) strain TP1906 (TMUV-TP1906) from a Culexannulus mosquito pool collected from the northern part of Taiwan in 2019. The TMUV-TP1906 genome is a 10,990-nucleotide-long, positive-sense, single-stranded RNA, consisting of a single open reading frame (ORF) encoding a polyprotein of 3425 amino acids, with 5' and 3' untranslated regions (UTRs) of 94 and 618 nucleotides, respectively. The nucleotide sequence of the TMUV-TP1906 of ORF exhibited 93.71% and 91.27% similarity with Sitiawan virus (STWV) and the TMUV prototype strain MM1775, respectively. The 3'-UTR variable region of TMUV-TP1906 showed nucleotide sequence divergence with other TMUV strains. Phylogenetic analysis of the complete ORF and polyprotein sequences revealed that TMUV-TP1906 is most closely related to STWV which causes encephalitis and retarded growth in chickens. We found that the TMUV-TP1906 caused a cytopathic effect (CPE) in the DF-1 chicken fibroblast cell line, while no apparent CPE was observed in Vero and C6/36 cells. In this study, we first identified and isolated a novel TMUV strain in Taiwan. In addition, to our knowledge, it is the first time that the TMUV strain was isolated from the Cx. annulus mosquitoes. Further study is warranted to investigate the host range and virulence of TMUV-TP1906.We identified and isolated a novel Tembusu virus (TMUV) strain TP1906 (TMUV-TP1906) from a Culexannulus mosquito pool collected from the northern part of Taiwan in 2019. The TMUV-TP1906 genome is a 10,990-nucleotide-long, positive-sense, single-stranded RNA, consisting of a single open reading frame (ORF) encoding a polyprotein of 3425 amino acids, with 5' and 3' untranslated regions (UTRs) of 94 and 618 nucleotides, respectively. The nucleotide sequence of the TMUV-TP1906 of ORF exhibited 93.71% and 91.27% similarity with Sitiawan virus (STWV) and the TMUV prototype strain MM1775, respectively. The 3'-UTR variable region of TMUV-TP1906 showed nucleotide sequence divergence with other TMUV strains. Phylogenetic analysis of the complete ORF and polyprotein sequences revealed that TMUV-TP1906 is most closely related to STWV which causes encephalitis and retarded growth in chickens. We found that the TMUV-TP1906 caused a cytopathic effect (CPE) in the DF-1 chicken fibroblast cell line, while no apparent CPE was observed in Vero and C6/36 cells. In this study, we first identified and isolated a novel TMUV strain in Taiwan. In addition, to our knowledge, it is the first time that the TMUV strain was isolated from the Cx. annulus mosquitoes. Further study is warranted to investigate the host range and virulence of TMUV-TP1906.
We identified and isolated a novel Tembusu virus (TMUV) strain TP1906 (TMUV-TP1906) from a mosquito pool collected from the northern part of Taiwan in 2019. The TMUV-TP1906 genome is a 10,990-nucleotide-long, positive-sense, single-stranded RNA, consisting of a single open reading frame (ORF) encoding a polyprotein of 3425 amino acids, with 5' and 3' untranslated regions (UTRs) of 94 and 618 nucleotides, respectively. The nucleotide sequence of the TMUV-TP1906 of ORF exhibited 93.71% and 91.27% similarity with Sitiawan virus (STWV) and the TMUV prototype strain MM1775, respectively. The 3'-UTR variable region of TMUV-TP1906 showed nucleotide sequence divergence with other TMUV strains. Phylogenetic analysis of the complete ORF and polyprotein sequences revealed that TMUV-TP1906 is most closely related to STWV which causes encephalitis and retarded growth in chickens. We found that the TMUV-TP1906 caused a cytopathic effect (CPE) in the DF-1 chicken fibroblast cell line, while no apparent CPE was observed in Vero and C6/36 cells. In this study, we first identified and isolated a novel TMUV strain in Taiwan. In addition, to our knowledge, it is the first time that the TMUV strain was isolated from the mosquitoes. Further study is warranted to investigate the host range and virulence of TMUV-TP1906.
We identified and isolated a novel Tembusu virus (TMUV) strain TP1906 (TMUV-TP1906) from a Culex annulus mosquito pool collected from the northern part of Taiwan in 2019. The TMUV-TP1906 genome is a 10,990-nucleotide-long, positive-sense, single-stranded RNA, consisting of a single open reading frame (ORF) encoding a polyprotein of 3425 amino acids, with 5′ and 3′ untranslated regions (UTRs) of 94 and 618 nucleotides, respectively. The nucleotide sequence of the TMUV-TP1906 of ORF exhibited 93.71% and 91.27% similarity with Sitiawan virus (STWV) and the TMUV prototype strain MM1775, respectively. The 3′-UTR variable region of TMUV-TP1906 showed nucleotide sequence divergence with other TMUV strains. Phylogenetic analysis of the complete ORF and polyprotein sequences revealed that TMUV-TP1906 is most closely related to STWV which causes encephalitis and retarded growth in chickens. We found that the TMUV-TP1906 caused a cytopathic effect (CPE) in the DF-1 chicken fibroblast cell line, while no apparent CPE was observed in Vero and C6/36 cells. In this study, we first identified and isolated a novel TMUV strain in Taiwan. In addition, to our knowledge, it is the first time that the TMUV strain was isolated from the Cx. annulus mosquitoes. Further study is warranted to investigate the host range and virulence of TMUV-TP1906.
Audience Academic
Author Shu, Pei-Yun
Hu, Huai-Chin
Chang, Mei-Chun
Peng, Shih-Huan
Su, Chien-Ling
Yang, Su-Lin
AuthorAffiliation Center for Diagnostics and Vaccine Development, Centers for Disease Control, Ministry of Health and Welfare, Taipei City 11561, Taiwan; shpeng@cdc.gov.tw (S.-H.P.); sue@cdc.gov.tw (C.-L.S.); newlover@cdc.gov.tw (M.-C.C.); huaichinhu@cdc.gov.tw (H.-C.H.); cerline@cdc.gov.tw (S.-L.Y.)
AuthorAffiliation_xml – name: Center for Diagnostics and Vaccine Development, Centers for Disease Control, Ministry of Health and Welfare, Taipei City 11561, Taiwan; shpeng@cdc.gov.tw (S.-H.P.); sue@cdc.gov.tw (C.-L.S.); newlover@cdc.gov.tw (M.-C.C.); huaichinhu@cdc.gov.tw (H.-C.H.); cerline@cdc.gov.tw (S.-L.Y.)
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BackLink https://www.ncbi.nlm.nih.gov/pubmed/32455871$$D View this record in MEDLINE/PubMed
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Keywords flavivirus 3′-UTR variable region
Tembusu virus
Sitiawan virus
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Snippet We identified and isolated a novel Tembusu virus (TMUV) strain TP1906 (TMUV-TP1906) from a Culex annulus mosquito pool collected from the northern part of...
We identified and isolated a novel Tembusu virus (TMUV) strain TP1906 (TMUV-TP1906) from a mosquito pool collected from the northern part of Taiwan in 2019....
We identified and isolated a novel Tembusu virus (TMUV) strain TP1906 (TMUV-TP1906) from a Culexannulus mosquito pool collected from the northern part of...
We identified and isolated a novel Tembusu virus (TMUV) strain TP1906 (TMUV-TP1906) from a Culex annulus mosquito pool collected from the northern part of...
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StartPage 567
SubjectTerms 3' Untranslated regions
Animals
Base Sequence
Cell culture
Cell Line
Chickens
Chlorocebus aethiops
Culicidae - virology
Deoxyribonucleic acid
DNA
Encephalitis
Fibroblasts
Flavivirus - classification
Flavivirus - genetics
Flavivirus - growth & development
Flavivirus - isolation & purification
flavivirus 3′-UTR variable region
Flavivirus Infections - veterinary
Flavivirus Infections - virology
Flaviviruses
Genetic aspects
Genome, Viral
Genomes
Host range
Host Specificity
Kinetics
Mosquitoes
Nucleotide sequence
Open Reading Frames
Phylogeny
Polyproteins - genetics
Poultry Diseases - virology
Ribonucleic acid
RNA
Sitiawan virus
Taiwan
Tembusu virus
Variable region
Vero Cells
Virulence
Viruses
Wetlands
Whole Genome Sequencing
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Title Genome Analysis of a Novel Tembusu Virus in Taiwan
URI https://www.ncbi.nlm.nih.gov/pubmed/32455871
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Volume 12
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