Petroleum pollution changes microbial diversity and network complexity of soil profile in an oil refinery
Petroleum pollution resulting from spills and leakages in oil refinery areas has been a significant environmental concern for decades. Despite this, the effects of petroleum pollutants on soil microbial communities and their potential for pollutant biodegradation still required further investigation...
Saved in:
Published in | Frontiers in microbiology Vol. 14; p. 1193189 |
---|---|
Main Authors | , , , , , , , , , |
Format | Journal Article |
Language | English |
Published |
Switzerland
Frontiers Research Foundation
23.05.2023
Frontiers Media S.A |
Subjects | |
Online Access | Get full text |
Cover
Loading…
Abstract | Petroleum pollution resulting from spills and leakages in oil refinery areas has been a significant environmental concern for decades. Despite this, the effects of petroleum pollutants on soil microbial communities and their potential for pollutant biodegradation still required further investigation.
In this study, we collected 75 soil samples from 0 to 5 m depths of 15 soil profiles in an abandoned refinery to analyze the effect of petroleum pollution on soil microbial diversity, community structure, and network co-occurrence patterns.
Our results suggested soil microbial a-diversity decreased under high C10-C40 levels, coupled with significant changes in the community structure of soil profiles. However, soil microbial network complexity increased with petroleum pollution levels, suggesting more complex microbial potential interactions. A module specific for methane and methyl oxidation was also found under high C10-C40 levels of the soil profile, indicating stronger methanotrophic and methylotrophic metabolic activities at the heavily polluted soil profile.
The increased network complexity observed may be due to more metabolic pathways and processes, as well as increased microbial interactions during these processes. These findings highlight the importance of considering both microbial diversity and network complexity in assessing the effects of petroleum pollution on soil ecosystems. |
---|---|
AbstractList | Petroleum pollution resulting from spills and leakages in oil refinery areas has been a significant environmental concern for decades. Despite this, the effects of petroleum pollutants on soil microbial communities and their potential for pollutant biodegradation still required further investigation.IntroductionPetroleum pollution resulting from spills and leakages in oil refinery areas has been a significant environmental concern for decades. Despite this, the effects of petroleum pollutants on soil microbial communities and their potential for pollutant biodegradation still required further investigation.In this study, we collected 75 soil samples from 0 to 5 m depths of 15 soil profiles in an abandoned refinery to analyze the effect of petroleum pollution on soil microbial diversity, community structure, and network co-occurrence patterns.MethodsIn this study, we collected 75 soil samples from 0 to 5 m depths of 15 soil profiles in an abandoned refinery to analyze the effect of petroleum pollution on soil microbial diversity, community structure, and network co-occurrence patterns.Our results suggested soil microbial a-diversity decreased under high C10-C40 levels, coupled with significant changes in the community structure of soil profiles. However, soil microbial network complexity increased with petroleum pollution levels, suggesting more complex microbial potential interactions. A module specific for methane and methyl oxidation was also found under high C10-C40 levels of the soil profile, indicating stronger methanotrophic and methylotrophic metabolic activities at the heavily polluted soil profile.ResultsOur results suggested soil microbial a-diversity decreased under high C10-C40 levels, coupled with significant changes in the community structure of soil profiles. However, soil microbial network complexity increased with petroleum pollution levels, suggesting more complex microbial potential interactions. A module specific for methane and methyl oxidation was also found under high C10-C40 levels of the soil profile, indicating stronger methanotrophic and methylotrophic metabolic activities at the heavily polluted soil profile.The increased network complexity observed may be due to more metabolic pathways and processes, as well as increased microbial interactions during these processes. These findings highlight the importance of considering both microbial diversity and network complexity in assessing the effects of petroleum pollution on soil ecosystems.DiscussionThe increased network complexity observed may be due to more metabolic pathways and processes, as well as increased microbial interactions during these processes. These findings highlight the importance of considering both microbial diversity and network complexity in assessing the effects of petroleum pollution on soil ecosystems. Petroleum pollution resulting from spills and leakages in oil refinery areas has been a significant environmental concern for decades. Despite this, the effects of petroleum pollutants on soil microbial communities and their potential for pollutant biodegradation still required further investigation. In this study, we collected 75 soil samples from 0 to 5 m depths of 15 soil profiles in an abandoned refinery to analyze the effect of petroleum pollution on soil microbial diversity, community structure, and network co-occurrence patterns. Our results suggested soil microbial a-diversity decreased under high C10-C40 levels, coupled with significant changes in the community structure of soil profiles. However, soil microbial network complexity increased with petroleum pollution levels, suggesting more complex microbial potential interactions. A module specific for methane and methyl oxidation was also found under high C10-C40 levels of the soil profile, indicating stronger methanotrophic and methylotrophic metabolic activities at the heavily polluted soil profile. The increased network complexity observed may be due to more metabolic pathways and processes, as well as increased microbial interactions during these processes. These findings highlight the importance of considering both microbial diversity and network complexity in assessing the effects of petroleum pollution on soil ecosystems. Petroleum pollution resulting from spills and leakages in oil refinery areas has been a significant environmental concern for decades. Despite this, the effects of petroleum pollutants on soil microbial communities and their potential for pollutant biodegradation still required further investigation. In this study, we collected 75 soil samples from 0 to 5 m depths of 15 soil profiles in an abandoned refinery to analyze the effect of petroleum pollution on soil microbial diversity, community structure, and network co-occurrence patterns. Our results suggested soil microbial a-diversity decreased under high C10–C40 levels, coupled with significant changes in the community structure of soil profiles. However, soil microbial network complexity increased with petroleum pollution levels, suggesting more complex microbial potential interactions. A module specific for methane and methyl oxidation was also found under high C10–C40 levels of the soil profile, indicating stronger methanotrophic and methylotrophic metabolic activities at the heavily polluted soil profile. The increased network complexity observed may be due to more metabolic pathways and processes, as well as increased microbial interactions during these processes. These findings highlight the importance of considering both microbial diversity and network complexity in assessing the effects of petroleum pollution on soil ecosystems. IntroductionPetroleum pollution resulting from spills and leakages in oil refinery areas has been a significant environmental concern for decades. Despite this, the effects of petroleum pollutants on soil microbial communities and their potential for pollutant biodegradation still required further investigation.MethodsIn this study, we collected 75 soil samples from 0 to 5 m depths of 15 soil profiles in an abandoned refinery to analyze the effect of petroleum pollution on soil microbial diversity, community structure, and network co-occurrence patterns.ResultsOur results suggested soil microbial a-diversity decreased under high C10–C40 levels, coupled with significant changes in the community structure of soil profiles. However, soil microbial network complexity increased with petroleum pollution levels, suggesting more complex microbial potential interactions. A module specific for methane and methyl oxidation was also found under high C10–C40 levels of the soil profile, indicating stronger methanotrophic and methylotrophic metabolic activities at the heavily polluted soil profile.DiscussionThe increased network complexity observed may be due to more metabolic pathways and processes, as well as increased microbial interactions during these processes. These findings highlight the importance of considering both microbial diversity and network complexity in assessing the effects of petroleum pollution on soil ecosystems. |
Author | Dai, Tianjiao Guo, Xue Li, Guanghe Yang, Yunfeng Zhou, Jizhong Gao, Qun Zhuang, Jugui Ye, Zhencheng Zhang, Ruihuan Zeng, Yufei |
AuthorAffiliation | 3 State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences , Beijing , China 6 Earth and Environmental Sciences Division, Lawrence Berkeley National Laboratory , Berkeley, CA , United States 4 Institute for Environmental Genomics, University of Oklahoma , Norman, OK , United States 1 State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University , Beijing , China 5 Department of Microbiology and Plant Biology, University of Oklahoma , Norman, OK , United States 2 School of Water Resources and Environment, China University of Geosciences , Beijing , China |
AuthorAffiliation_xml | – name: 2 School of Water Resources and Environment, China University of Geosciences , Beijing , China – name: 5 Department of Microbiology and Plant Biology, University of Oklahoma , Norman, OK , United States – name: 6 Earth and Environmental Sciences Division, Lawrence Berkeley National Laboratory , Berkeley, CA , United States – name: 3 State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences , Beijing , China – name: 4 Institute for Environmental Genomics, University of Oklahoma , Norman, OK , United States – name: 1 State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University , Beijing , China |
Author_xml | – sequence: 1 givenname: Jugui surname: Zhuang fullname: Zhuang, Jugui – sequence: 2 givenname: Ruihuan surname: Zhang fullname: Zhang, Ruihuan – sequence: 3 givenname: Yufei surname: Zeng fullname: Zeng, Yufei – sequence: 4 givenname: Tianjiao surname: Dai fullname: Dai, Tianjiao – sequence: 5 givenname: Zhencheng surname: Ye fullname: Ye, Zhencheng – sequence: 6 givenname: Qun surname: Gao fullname: Gao, Qun – sequence: 7 givenname: Yunfeng surname: Yang fullname: Yang, Yunfeng – sequence: 8 givenname: Xue surname: Guo fullname: Guo, Xue – sequence: 9 givenname: Guanghe surname: Li fullname: Li, Guanghe – sequence: 10 givenname: Jizhong surname: Zhou fullname: Zhou, Jizhong |
BackLink | https://www.ncbi.nlm.nih.gov/pubmed/37287448$$D View this record in MEDLINE/PubMed https://www.osti.gov/servlets/purl/2470616$$D View this record in Osti.gov |
BookMark | eNp9Uk1vEzEQXaEiWkr_AAdkceKSYI8dr_eEUEWhUiU4gMTN8npnExevHWynbf49ThOqlgM--GP85s2z571sjkIM2DSvGZ1zrrr34-RsPwcKfM5Yx5nqnjUnTEox4xR-Hj3aHzdnOV_TOgSFOr9ojnkLqhVCnTTuG5YUPW4mso7eb4qLgdiVCUvMpJZIsXfGk8HdYMqubIkJAwlYbmP6RWyc1h7vduE4khydJ-sUR-eRuFCRZBdJOLqAafuqeT4an_HssJ42Py4-fT__Mrv6-vny_OPVzIpOlpm0YDqmjB2qQm5aPvZ9CxwFpYwzBCVHO0gmQKDgfU87wIXiAF3LBior5rS53PMO0VzrdXKTSVsdjdP3gZiW2qTirEe9AKsYU0qZ0QipoJc9mlpLUqhntqhcH_Zc600_4WAxlGT8E9KnN8Gt9DLeaEZBQJVTGd7uGWIuTmfrCtqVjSGgLRpESyWTFfTuUCbF3xvMRU8uW_TeBIybrEEB7zrKO6jQN48VPUj529EKgD2gti7n-vkPEEb1zjn63jl65xx9cE5NUv8kVaFm54X6Kuf_l_oHz5jKAQ |
CitedBy_id | crossref_primary_10_1016_j_biteb_2024_101866 crossref_primary_10_3390_jof10060436 crossref_primary_10_1016_j_jenvman_2024_121114 crossref_primary_10_1007_s11356_023_31344_4 crossref_primary_10_3389_fmicb_2024_1384463 crossref_primary_10_1016_j_jhazmat_2024_135078 crossref_primary_10_1016_j_ecoenv_2024_117609 crossref_primary_10_1111_1462_2920_70081 crossref_primary_10_1016_j_envpol_2024_124817 crossref_primary_10_3390_app14125243 crossref_primary_10_3390_toxics12090625 crossref_primary_10_1016_j_jes_2024_12_008 crossref_primary_10_3390_su151511511 crossref_primary_10_1016_j_heliyon_2024_e34336 |
Cites_doi | 10.1128/JB.01449-09 10.2323/jgam.48.109 10.1099/ijs.0.65571-0 10.1186/1471-2105-13-113 10.1016/j.jhazmat.2020.124060 10.1016/S0160-4120(01)00021-6 10.3390/microorganisms10030540 10.1016/j.envpol.2021.118511 10.1093/bbb/zbab150 10.3390/molecules24183400 10.1111/j.1574-6976.2008.00122.x 10.1007/s10529-008-9816-0 10.1007/s11270-010-0326-z 10.1128/mBio.00169-10 10.1016/j.chemosphere.2018.08.094 10.1016/j.resmic.2018.08.001 10.1007/s00792-008-0148-8 10.1016/j.biortech.2016.10.037 10.1016/j.envpol.2022.119531 10.1111/j.1574-6968.2012.02631.x 10.1016/j.envpol.2020.114328 10.1099/00207713-51-2-581 10.1099/ijs.0.63728-0 10.1111/1462-2920.13447 10.1099/ijs.0.63565-0 10.1016/j.soilbio.2016.04.005 10.1099/ijs.0.64541-0 10.1128/AEM.02833-12 10.1099/ijs.0.65098-0 10.1007/s00253-005-0112-9 10.1099/ijs.0.010074-0 10.1002/ldr.4260 10.1128/aem.62.2.316-322.1996 10.7508/pj.2017.01.002 10.1101/081257 10.1099/ijsem.0.000798 10.3389/fmicb.2020.539604 10.1099/00207713-47-4-1262 10.1007/s00284-009-9414-y 10.3389/fmicb.2016.01407 10.1128/mBio.00122-11 10.1111/j.1574-6968.1996.tb08566.x 10.1007/s00284-018-1541-x 10.1016/j.eti.2018.02.001 10.1111/jam.14140 10.1007/s00367-003-0135-0 10.1007/s11356-016-6515-6 10.1007/s42770-021-00476-5 10.2323/jgam.58.357 10.1099/ijsem.0.003325 10.12030/j.cjee.201809100 10.1016/j.jclepro.2022.130486 10.1093/bioinformatics/btq461 10.1099/ijs.0.65179-0 10.1111/j.1462-2920.2011.02570.x 10.1007/s11270-019-4118-9 10.1128/genomeA.01064-13 10.1021/acs.est.1c00508 10.1007/s00792-013-0582-0 |
ContentType | Journal Article |
Copyright | Copyright © 2023 Zhuang, Zhang, Zeng, Dai, Ye, Gao, Yang, Guo, Li and Zhou. Copyright © 2023 Zhuang, Zhang, Zeng, Dai, Ye, Gao, Yang, Guo, Li and Zhou. 2023 Zhuang, Zhang, Zeng, Dai, Ye, Gao, Yang, Guo, Li and Zhou |
Copyright_xml | – notice: Copyright © 2023 Zhuang, Zhang, Zeng, Dai, Ye, Gao, Yang, Guo, Li and Zhou. – notice: Copyright © 2023 Zhuang, Zhang, Zeng, Dai, Ye, Gao, Yang, Guo, Li and Zhou. 2023 Zhuang, Zhang, Zeng, Dai, Ye, Gao, Yang, Guo, Li and Zhou |
CorporateAuthor | Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States) |
CorporateAuthor_xml | – name: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States) |
DBID | AAYXX CITATION NPM 7X8 OIOZB OTOTI 5PM DOA |
DOI | 10.3389/fmicb.2023.1193189 |
DatabaseName | CrossRef PubMed MEDLINE - Academic OSTI.GOV - Hybrid OSTI.GOV PubMed Central (Full Participant titles) DOAJ Directory of Open Access Journals |
DatabaseTitle | CrossRef PubMed MEDLINE - Academic |
DatabaseTitleList | MEDLINE - Academic PubMed |
Database_xml | – sequence: 1 dbid: DOA name: DOAJ Directory of Open Access Journals url: https://www.doaj.org/ sourceTypes: Open Website – sequence: 2 dbid: NPM name: PubMed url: https://proxy.k.utb.cz/login?url=http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed sourceTypes: Index Database |
DeliveryMethod | fulltext_linktorsrc |
Discipline | Biology |
EISSN | 1664-302X |
ExternalDocumentID | oai_doaj_org_article_52c811888afa4682b6bea23e602a4615 PMC10242060 2470616 37287448 10_3389_fmicb_2023_1193189 |
Genre | Journal Article |
GroupedDBID | 53G 5VS 9T4 AAFWJ AAKDD AAYXX ACGFO ACGFS ACXDI ADBBV ADRAZ AENEX AFPKN ALMA_UNASSIGNED_HOLDINGS AOIJS BAWUL BCNDV CITATION DIK ECGQY GROUPED_DOAJ GX1 HYE KQ8 M48 M~E O5R O5S OK1 PGMZT RNS RPM IPNFZ NPM RIG 7X8 OIOZB OTOTI 5PM |
ID | FETCH-LOGICAL-c496t-6c2a918acd8743a73fbb723e400131e286fcd61424e43bb092e58322971d06013 |
IEDL.DBID | M48 |
ISSN | 1664-302X |
IngestDate | Wed Aug 27 01:28:38 EDT 2025 Thu Aug 21 18:38:13 EDT 2025 Mon Mar 31 02:25:41 EDT 2025 Fri Jul 11 16:01:49 EDT 2025 Thu Apr 03 07:05:25 EDT 2025 Thu Apr 24 22:59:11 EDT 2025 Tue Jul 01 00:58:15 EDT 2025 |
IsDoiOpenAccess | true |
IsOpenAccess | true |
IsPeerReviewed | true |
IsScholarly | true |
Keywords | refinery soil microbial diversity co-occurrence network petroleum pollution |
Language | English |
License | Copyright © 2023 Zhuang, Zhang, Zeng, Dai, Ye, Gao, Yang, Guo, Li and Zhou. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
LinkModel | DirectLink |
MergedId | FETCHMERGED-LOGICAL-c496t-6c2a918acd8743a73fbb723e400131e286fcd61424e43bb092e58322971d06013 |
Notes | ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 USDOE AC02-05CH11231 Reviewed by: Chen Cai, University of Science and Technology of China, China; Sabrina Beckmann, Oklahoma State University, United States Edited by: Lidong Shen, Nanjing University of Information Science and Technology, China |
OpenAccessLink | http://journals.scholarsportal.info/openUrl.xqy?doi=10.3389/fmicb.2023.1193189 |
PMID | 37287448 |
PQID | 2823990392 |
PQPubID | 23479 |
ParticipantIDs | doaj_primary_oai_doaj_org_article_52c811888afa4682b6bea23e602a4615 pubmedcentral_primary_oai_pubmedcentral_nih_gov_10242060 osti_scitechconnect_2470616 proquest_miscellaneous_2823990392 pubmed_primary_37287448 crossref_primary_10_3389_fmicb_2023_1193189 crossref_citationtrail_10_3389_fmicb_2023_1193189 |
ProviderPackageCode | CITATION AAYXX |
PublicationCentury | 2000 |
PublicationDate | 2023-05-23 |
PublicationDateYYYYMMDD | 2023-05-23 |
PublicationDate_xml | – month: 05 year: 2023 text: 2023-05-23 day: 23 |
PublicationDecade | 2020 |
PublicationPlace | Switzerland |
PublicationPlace_xml | – name: Switzerland – name: United States |
PublicationTitle | Frontiers in microbiology |
PublicationTitleAlternate | Front Microbiol |
PublicationYear | 2023 |
Publisher | Frontiers Research Foundation Frontiers Media S.A |
Publisher_xml | – name: Frontiers Research Foundation – name: Frontiers Media S.A |
References | Byrne-Bailey (B6) 2010; 192 Wang (B52) 2016; 23 Nobu (B36) 2014; 2 Maeda (B34) 2009; 59 Zhou (B57) 1996; 62 Yamada (B56) 2007; 57 Geng (B18) 2022; 307 Jiao (B23) 2016; 98 Coates (B10) 2001; 51 Varjani (B50) 2017; 223 Takeuchi (B47) 2021; 85 Jeong (B22) 2019; 126 Sorokina (B46) 2012; 335 Dasgupta (B11) 2018; 75 Deng (B12) 2012; 13 Li (B28) 2012; 58 Gray (B19) 2011; 13 Gutierrez (B20) 2013; 79 Bae (B4) 1996; 145 Perez-Pantoja (B37) 2008; 32 Edgar (B13) 2010; 26 Perez-Rodriguez (B38) 2016; 66 Sarkar (B42) 2016; 7 Lu (B33) 2019; 230 Camacho-Montealegre (B8) 2021; 52 Chen (B9) 2005; 55 Toth (B48) 2021; 55 Vorob'ev (B51) 2009; 59 Fudou (B15) 2002; 48 Sheng (B43) 2021; 402 Arvanitis (B3) 2008; 30 Krumholz (B26) 1997; 47 Logeshwaran (B32) 2018; 10 Li (B29) 2019; 69 Amini (B2) 2017; 3 Liu (B31) 2022; 33 Kvenvolden (B27) 2001; 23 Sakai (B41) 2008; 58 Issotta (B21) 2018; 169 Zhou (B59) 2011; 4 Gao (B17) 2022; 293 Poser (B39) 2013; 17 Futagami (B16) 2006; 70 Lindner (B30) 2007; 57 Barathi (B5) 2001; 26 Xie (B55) 2010; 212 Truskewycz (B49) 2019; 24 Wu (B54) 2020; 262 Sorokin (B45) 2008; 12 Alves (B1) 2020; 11 Edgar (B14) 2016; 45 Qun (B40) 2019; 13 Wartiainen (B53) 2006; 56 Zhou (B58) 2010; 3 Junghare (B24) 2016; 18 Khan (B25) 2018; 212 Cai (B7) 2022; 336 Naylor (B35) 2022; 10 Song (B44) 2007; 57 |
References_xml | – volume: 192 start-page: 1475 year: 2010 ident: B6 article-title: Completed genome sequence of the anaerobic iron-oxidizing bacterium Acidovorax ebreus strain TPSY publication-title: J. Bacteriol. doi: 10.1128/JB.01449-09 – volume: 48 start-page: 109 year: 2002 ident: B15 article-title: Haliangium ochraceum gen. nov., sp. nov. and Haliangium tepidum sp. nov.: novel moderately halophilic myxobacteria isolated from coastal saline environments publication-title: J. Gen. Appl. Microbiol doi: 10.2323/jgam.48.109 – volume: 58 start-page: 929 year: 2008 ident: B41 article-title: Methanocella paludicola gen. nov., sp. nov., a methane-producing archaeon, the first isolate of the lineage 'Rice Cluster I', and proposal of the new archaeal order Methanocellales ord. nov publication-title: Int. J. Syst. Evolut. Microbiol. doi: 10.1099/ijs.0.65571-0 – volume: 13 start-page: 113 year: 2012 ident: B12 article-title: Molecular ecological network analyses publication-title: BMC Bioinform. doi: 10.1186/1471-2105-13-113 – volume: 402 start-page: 124060 year: 2021 ident: B43 article-title: History of petroleum disturbance triggering the depth-resolved assembly process of microbial communities in the vadose zone publication-title: J. Hazard Mater. doi: 10.1016/j.jhazmat.2020.124060 – volume: 26 start-page: 413 year: 2001 ident: B5 article-title: Utilization of petroleum hydrocarbons by Pseudomonas fluorescens isolated from a petroleum-contaminated soil publication-title: Environ. Int. doi: 10.1016/S0160-4120(01)00021-6 – volume: 10 start-page: 540 year: 2022 ident: B35 article-title: Trends in microbial community composition and function by soil depth publication-title: Microorganisms doi: 10.3390/microorganisms10030540 – volume: 293 start-page: 118511 year: 2022 ident: B17 article-title: Effect of petroleum hydrocarbon pollution levels on the soil microecosystem and ecological function publication-title: Environ. Pollut. doi: 10.1016/j.envpol.2021.118511 – volume: 85 start-page: 2326 year: 2021 ident: B47 article-title: Acetate excretion by a methanotroph, Methylocaldum marinum S8, under aerobic conditions publication-title: Biosci. Biotechnol. Biochem. doi: 10.1093/bbb/zbab150 – volume: 24 start-page: 400 year: 2019 ident: B49 article-title: Petroleum hydrocarbon contamination in terrestrial ecosystems-fate and microbial responses publication-title: Molecules doi: 10.3390/molecules24183400 – volume: 32 start-page: 736 year: 2008 ident: B37 article-title: Metabolic reconstruction of aromatic compounds degradation from the genome of the amazing pollutant-degrading bacterium Cupriavidus necator JMP134 publication-title: FEMS Microbiol. Rev doi: 10.1111/j.1574-6976.2008.00122.x – volume: 30 start-page: 2105 year: 2008 ident: B3 article-title: A refinery sludge deposition site: presence of nahH and alkJ genes and crude oil biodegradation ability of bacterial isolates publication-title: Biotechnol. Lett. doi: 10.1007/s10529-008-9816-0 – volume: 212 start-page: 113 year: 2010 ident: B55 article-title: Stable isotope probing identifies novel m-xylene degraders in soil microcosms from contaminated and uncontaminated sites publication-title: Water Air Soil Pollut. doi: 10.1007/s11270-010-0326-z – volume: 3 start-page: 10 year: 2010 ident: B58 article-title: Functional molecular ecological networks publication-title: mBio 1 doi: 10.1128/mBio.00169-10 – volume: 212 start-page: 755 year: 2018 ident: B25 article-title: Toxicity assessment of fresh and weathered petroleum hydrocarbons in contaminated soil- a review publication-title: Chemosphere doi: 10.1016/j.chemosphere.2018.08.094 – volume: 169 start-page: 608 year: 2018 ident: B21 article-title: Insights into the biology of acidophilic members of the Acidiferrobacteraceae family derived from comparative genomic analyses publication-title: Res. Microbiol. doi: 10.1016/j.resmic.2018.08.001 – volume: 12 start-page: 431 year: 2008 ident: B45 article-title: Dethiobacter alkaliphilus gen. nov. sp. nov., and Desulfurivibrio alkaliphilus gen. nov. sp. nov.: two novel representatives of reductive sulfur cycle from soda lakes publication-title: Extremophiles doi: 10.1007/s00792-008-0148-8 – volume: 223 start-page: 277 year: 2017 ident: B50 article-title: Microbial degradation of petroleum hydrocarbons publication-title: Bioresour. Technol. doi: 10.1016/j.biortech.2016.10.037 – volume: 307 start-page: 119531 year: 2022 ident: B18 article-title: Interaction and spatio-taxonomic patterns of the soil microbiome around oil production wells impacted by petroleum hydrocarbons publication-title: Environ. Pollut. doi: 10.1016/j.envpol.2022.119531 – volume: 335 start-page: 19 year: 2012 ident: B46 article-title: Ferrovibrio denitrificans gen. nov., sp. nov., a novel neutrophilic facultative anaerobic Fe(II)-oxidizing bacterium publication-title: FEMS Microbiol. Lett. doi: 10.1111/j.1574-6968.2012.02631.x – volume: 262 start-page: 114328 year: 2020 ident: B54 article-title: Distributions of chlorinated paraffins and the effects on soil microbial community structure in a production plant brownfield site publication-title: Environ. Pollut. doi: 10.1016/j.envpol.2020.114328 – volume: 51 start-page: 581 year: 2001 ident: B10 article-title: Geobacter hydrogenophilus, Geobacter chapellei and Geobacter grbiciae, three new, strictly anaerobic, dissimilatory Fe(III)-reducers publication-title: Int. J. Sys. Evolut. Microbiol. doi: 10.1099/00207713-51-2-581 – volume: 56 start-page: 109 year: 2006 ident: B53 article-title: Methylobacter tundripaludum sp. nov., a methane-oxidizing bacterium from Arctic wetland soil on the Svalbard islands, Norway. (78 degrees N) publication-title: Int. J. Syst. Evol. Microbiol. doi: 10.1099/ijs.0.63728-0 – volume: 18 start-page: 3175 year: 2016 ident: B24 article-title: Enzymes involved in the anaerobic degradation of ortho-phthalate by the nitrate-reducing bacterium Azoarcus sp. strain PA01 publication-title: Environ. Microbiol. doi: 10.1111/1462-2920.13447 – volume: 55 start-page: 1319 year: 2005 ident: B9 article-title: Syntrophobacter sulfatireducens sp. nov., a novel syntrophic, propionate-oxidizing bacterium isolated from UASB reactors publication-title: Int. J. Syst. Evol. Microbiol. doi: 10.1099/ijs.0.63565-0 – volume: 98 start-page: 64 year: 2016 ident: B23 article-title: Bacterial communities in oil contaminated soils: biogeography and co-occurrence patterns publication-title: Soil Biol. Biochem. doi: 10.1016/j.soilbio.2016.04.005 – volume: 57 start-page: 1891 year: 2007 ident: B30 article-title: Methylocystis hirsuta sp. nov., a novel methanotroph isolated from a groundwater aquifer publication-title: Int. J. Syst. Evol. Microbiol. doi: 10.1099/ijs.0.64541-0 – volume: 79 start-page: 205 year: 2013 ident: B20 article-title: Polycyclovorans algicola gen. nov., sp. nov., an aromatic-hydrocarbon-degrading marine bacterium found associated with laboratory cultures of marine phytoplankton publication-title: Appl. Environ. Microbiol. doi: 10.1128/AEM.02833-12 – volume: 57 start-page: 2299 year: 2007 ident: B56 article-title: Bellilinea caldifistulae gen. nov., sp. nov. and Longilinea arvoryzae gen. nov., sp. nov., strictly anaerobic, filamentous bacteria of the phylum Chloroflexi isolated from methanogenic propionate-degrading consortia publication-title: Int. J. Syst. Evol. Microbiol. doi: 10.1099/ijs.0.65098-0 – volume: 70 start-page: 720 year: 2006 ident: B16 article-title: Emergence of two types of non-dechlorinating variants in the tetrachloroethene-halorespiring Desulfitobacterium sp. strain Y51 publication-title: Appl. Microbiol. Biotechnol. doi: 10.1007/s00253-005-0112-9 – volume: 59 start-page: 2538 year: 2009 ident: B51 article-title: Methylovirgula ligni gen. nov., sp. nov., an obligately acidophilic, facultatively methylotrophic bacterium with a highly divergent mxaF gene publication-title: Int. J. Syst. Evol. Microbiol. doi: 10.1099/ijs.0.010074-0 – volume: 33 start-page: 1718 year: 2022 ident: B31 article-title: Petroleum-contamination drives the shift of microbiome through modifying soil metallome publication-title: Land Degrad. Develop. doi: 10.1002/ldr.4260 – volume: 62 start-page: 316 year: 1996 ident: B57 article-title: DNA recovery from soils of diverse composition publication-title: Appl. Environ. Microbiol. doi: 10.1128/aem.62.2.316-322.1996 – volume: 3 start-page: 9 year: 2017 ident: B2 article-title: Biodegradation of polycyclic21 aromatic hydrocarbons by Pseudomonas species publication-title: Pollution doi: 10.7508/pj.2017.01.002 – volume: 45 start-page: 081257 year: 2016 ident: B14 article-title: UNOISE2: improved error-correction for Illumina 16S and ITS amplicon publication-title: bioRxiv doi: 10.1101/081257 – volume: 66 start-page: 830 year: 2016 ident: B38 article-title: Deferrisoma palaeochoriense sp. nov., a thermophilic, iron(III)-reducing bacterium from a shallow-water hydrothermal vent in the Mediterranean Sea publication-title: Int. J. Syst. Evol. Microbiol. doi: 10.1099/ijsem.0.000798 – volume: 11 start-page: 539604 year: 2020 ident: B1 article-title: Long-chain fatty acids degradation by desulfomonile species and proposal of candidatus desulfomonile palmitatoxidans publication-title: Front. Microbiol. doi: 10.3389/fmicb.2020.539604 – volume: 47 start-page: 1262 year: 1997 ident: B26 article-title: Desulfuromonas chloroethenica sp. nov. uses tetrachloroethylene and trichloroethylene as electron acceptors publication-title: Int. J. Sys. Bacteriol. doi: 10.1099/00207713-47-4-1262 – volume: 59 start-page: 154 year: 2009 ident: B34 article-title: Isolation and characterization of a car gene cluster from the naphthalene, phenanthrene, and carbazole-degrading marine isolate Lysobacter sp. strain OC7 publication-title: Curr. Microbiol. doi: 10.1007/s00284-009-9414-y – volume: 7 start-page: 1407 year: 2016 ident: B42 article-title: Biostimulation of indigenous microbial community for bioremediation of petroleum refinery sludge publication-title: Front. Microbiol. doi: 10.3389/fmicb.2016.01407 – volume: 4 start-page: 11 year: 2011 ident: B59 article-title: Phylogenetic molecular ecological network of soil microbial communities in response to elevated CO2 publication-title: mBio 2 doi: 10.1128/mBio.00122-11 – volume: 145 start-page: 125 year: 1996 ident: B4 article-title: Biodegradation of 4-chlorophenol via a hydroquinone pathway by Arthrobacter ureafaciens CPR706 publication-title: FEMS Microbiol. Lett. doi: 10.1111/j.1574-6968.1996.tb08566.x – volume: 75 start-page: 1441 year: 2018 ident: B11 article-title: Mapping the Bacterial Community in Digboi Oil Refinery, India by High-Throughput Sequencing Approach publication-title: Curr. Microbio. doi: 10.1007/s00284-018-1541-x – volume: 10 start-page: 175 year: 2018 ident: B32 article-title: Petroleum hydrocarbons. (PH) in groundwater aquifers: an overview of environmental fate, toxicity, microbial degradation and risk-based remediation approaches publication-title: Environ. Technol. Innovat. doi: 10.1016/j.eti.2018.02.001 – volume: 126 start-page: 534 year: 2019 ident: B22 article-title: Development of a novel methanotrophic process with the helper micro-organism Hyphomicrobium sp. NM3 publication-title: J. Appl. Microbiol. doi: 10.1111/jam.14140 – volume: 23 start-page: 140 year: 2001 ident: B27 article-title: Natural seepage of crude oil into the marine environment publication-title: Geo-Mar. Lett. doi: 10.1007/s00367-003-0135-0 – volume: 23 start-page: 13378 year: 2016 ident: B52 article-title: Efficient biodegradation of phenanthrene by a novel strain Massilia sp. WF1 isolated from a PAH-contaminated soil publication-title: Environ. Sci. Pollut. Res. Int. doi: 10.1007/s11356-016-6515-6 – volume: 52 start-page: 787 year: 2021 ident: B8 article-title: Prokaryotic community diversity during bioremediation of crude oil contaminated oilfield soil: effects of hydrocarbon concentration and salinity publication-title: Braz. J. Microbio. doi: 10.1007/s42770-021-00476-5 – volume: 58 start-page: 357 year: 2012 ident: B28 article-title: Novosphingobium sediminis sp. nov., isolated from the sediment of a eutrophic lake publication-title: J. Gen. Appl. Microbiol doi: 10.2323/jgam.58.357 – volume: 69 start-page: 1398 year: 2019 ident: B29 article-title: soli sp. nov., isolated from arsenic and cadmium contaminated farmland soil publication-title: Int. J. Syst. Evol. Microbiol. doi: 10.1099/ijsem.0.003325 – volume: 13 start-page: 1099 year: 2019 ident: B40 article-title: Effect of biological matrix on denitrification and microorganisms of SWIS publication-title: J. Environ. Engin. doi: 10.12030/j.cjee.201809100 – volume: 336 start-page: 486 year: 2022 ident: B7 article-title: Spatial distribution and nitrogen metabolism behaviors of anammox biofilms in bioelectrochemical system regulated by continuous/intermittent weak electrical stimulation publication-title: J. Clean. Prod. doi: 10.1016/j.jclepro.2022.130486 – volume: 26 start-page: 2460 year: 2010 ident: B13 article-title: Search and clustering orders of magnitude faster than BLAST publication-title: Bioinformatics doi: 10.1093/bioinformatics/btq461 – volume: 57 start-page: 2125 year: 2007 ident: B44 article-title: Methylibium aquaticum sp. nov., a betaproteobacterium isolated from a eutrophic freshwater pond publication-title: Int. J. Syst. Evol. Microbiol. doi: 10.1099/ijs.0.65179-0 – volume: 13 start-page: 2957 year: 2011 ident: B19 article-title: The quantitative significance of Syntrophaceae and syntrophic partnerships in methanogenic degradation of crude oil alkanes publication-title: Environ. Microbiol. doi: 10.1111/j.1462-2920.2011.02570.x – volume: 230 start-page: 9 year: 2019 ident: B33 article-title: Shift of soil polycyclic aromatic hydrocarbons. (PAHs) dissipation pattern and microbial community composition due to rhamnolipid supplementation publication-title: Water Air Soil Pollut. doi: 10.1007/s11270-019-4118-9 – volume: 2 start-page: 13 year: 2014 ident: B36 article-title: Draft genome sequence of syntrophorhabdus aromaticivorans strain UI, a mesophilic aromatic compound-degrading syntroph publication-title: Gen. Announc. doi: 10.1128/genomeA.01064-13 – volume: 55 start-page: 7970 year: 2021 ident: B48 article-title: Anaerobic benzene biodegradation linked to the growth of highly specific bacterial clades publication-title: Environ. Sci. Technol. doi: 10.1021/acs.est.1c00508 – volume: 17 start-page: 1003 year: 2013 ident: B39 article-title: Disproportionation of elemental sulfur by haloalkaliphilic bacteria from soda lakes publication-title: Extremophiles doi: 10.1007/s00792-013-0582-0 |
SSID | ssj0000402000 |
Score | 2.444099 |
Snippet | Petroleum pollution resulting from spills and leakages in oil refinery areas has been a significant environmental concern for decades. Despite this, the... IntroductionPetroleum pollution resulting from spills and leakages in oil refinery areas has been a significant environmental concern for decades. Despite... |
SourceID | doaj pubmedcentral osti proquest pubmed crossref |
SourceType | Open Website Open Access Repository Aggregation Database Index Database Enrichment Source |
StartPage | 1193189 |
SubjectTerms | BASIC BIOLOGICAL SCIENCES co-occurrence network microbial diversity Microbiology petroleum pollution refinery soil |
SummonAdditionalLinks | – databaseName: DOAJ Directory of Open Access Journals dbid: DOA link: http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwrV1Na9wwEB1KINBL6Wfqpg0q5FbcWLIsS8c2JIQeekogNyHJMjVs7NDdheTfd0byLrultJeejGUJpJmR9QbNvAE4RUPpuBRtGRq6ZjRalsbEquSO102QnPuQ2D6_q6sb-e22ud0p9UUxYZkeOAvurBFBIwjW2vVOKi288tGJOqpK4HtKLxd45u04U-kfTG5RVeUsGfTCDKppCP4zFQvHv4RBSzZ7J1Ei7MfHhBvrT2Dz95jJnUPo8jk8m9Ej-5Jn_QKexPElHOZ6ko-vYKD6WNMiru_YPZUwJqGznNq7ZHdD4lzC4d0mFoO5sWNjDgRnKbg8PlDz1LPlNCzYXNCbDSP2ZNSCq6BswcfXcHN5cX1-Vc61FMogjVqVKghnuHah04gZXFv33rcoRpkId6LQqg-dorS3KGvvKyNiQ5vdtLwjypb6DRyM0xjfApO8cn0lY--8kC4iwOwCihXHdHgiNqIAvpGrDTPRONW7WFh0OEgXNunCki7srIsCPm3H3Geajb_2_krq2vYkiuzUgIZjZ8Ox_zKcAo5J2RaRBtHlBoorCisrZIsQRxXwcWMDFjcc3aK4MU7rpUUfFUFdhbiygKNsE9uJ1G0qJ6AL0HvWsjfT_S_j8CORenMCSyjpd_9jbcfwlORFUQ6ifg8Hq5_r-AHB08qfpH3yC9KDFcU priority: 102 providerName: Directory of Open Access Journals |
Title | Petroleum pollution changes microbial diversity and network complexity of soil profile in an oil refinery |
URI | https://www.ncbi.nlm.nih.gov/pubmed/37287448 https://www.proquest.com/docview/2823990392 https://www.osti.gov/servlets/purl/2470616 https://pubmed.ncbi.nlm.nih.gov/PMC10242060 https://doaj.org/article/52c811888afa4682b6bea23e602a4615 |
Volume | 14 |
hasFullText | 1 |
inHoldings | 1 |
isFullTextHit | |
isPrint | |
link | http://utb.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwfV3da9swED-6jsFeRruvel2LBnsbLpYsy_JDGVtZVwbb0wJ5E5Isb4bU7vIBzX-_O9kJy2j7khBFCvJ9SL-LTvcDeI-GUnMpytQXdMxYaZlWVchSbnleeMm587Ha5w91NZHfpsV0DzZ0R6MAF3eGdsQnNZnPzm7_rD-iw59TxIn7LWqg9e6MeMBxAajQSKtH8Bh3ppIYDb6PcD-uzBQsxVspXCk6EBDT4R7NPT-zs1fFkv741qPr3QVH_8-q_GebujyAZyO-ZJ8GgziEvdA9hycD4-T6BbTEoNXPwuqa3RDJMamFDZd_F-y6jVWZcHi9ydZgtqtZN6SKs5h-Hm6puW_Yom9nbKT8Zm2HPRm14FPQfcL1S5hcfvl5cZWObAupl5VapsoLW3Ftfa0RVdgyb5wrRR5kLMkThFaNrxVdjAsydy6rRChoOahKXlNRl_wV7Hd9F46ASZ7ZJpOhsU5IGxCC1h7FimNq3DMLkQDfyNX4sRQ5MWLMDIYkpAsTdWFIF2bURQIftmNuhkIcD_b-TOra9qQi2rGhn_8yo0-aQniN8ZXWtrFSaeGUCxafWGUCP_MigWNStkEsQgV1PWUe-aURskQQpBJ4t7EBgy5J5yy2C_1qYTCKRdiXIfJM4PVgE9uJ5GUkHNAJ6B1r2Znp7jdd-zuW_eYEp1DSbx6c1jE8JUFQgoPI38L-cr4KJ4iblu40_t-Ar1-n_DQ6xl9QwxXU |
linkProvider | Scholars Portal |
openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Petroleum+pollution+changes+microbial+diversity+and+network+complexity+of+soil+profile+in+an+oil+refinery&rft.jtitle=Frontiers+in+microbiology&rft.au=Zhuang%2C+Jugui&rft.au=Zhang%2C+Ruihuan&rft.au=Zeng%2C+Yufei&rft.au=Dai%2C+Tianjiao&rft.date=2023-05-23&rft.pub=Frontiers+Research+Foundation&rft.issn=1664-302X&rft.eissn=1664-302X&rft.volume=14&rft_id=info:doi/10.3389%2Ffmicb.2023.1193189&rft.externalDocID=2470616 |
thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1664-302X&client=summon |
thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1664-302X&client=summon |
thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1664-302X&client=summon |