Identification of novel cell glycolysis related gene signature predicting survival in patients with breast cancer

• Published in: Scientific reports Vol. 11; no. 1; p. 3986
• Main Authors: Jiang, Feng, Wu, Chuyan, Wang, Ming, Wei, Ke, Wang, Jimei
• Format: Journal Article
• Language: English
• Published: England Nature Publishing Group 17.02.2021; Nature Publishing Group UK; Nature Portfolio
• Subjects: Biomarkers; Breast cancer; Gene expression; Genes; Genomes; Glycolysis; Interleukin 1; Medical prognosis; Multivariate analysis; Predictions; Prognosis; Regression analysis; Survival; Tumors
• DOI: 10.1038/s41598-021-83628-9
• ISSN: 2045-2322

One of the most frequently identified tumors and a contributing cause of death in women is breast cancer (BC). Many biomarkers associated with survival and prognosis were identified in previous studies through database mining. Nevertheless, the predictive capabilities of single-gene biomarkers are not accurate enough. Genetic signatures can be an enhanced prediction method. This research analyzed data from The Cancer Genome Atlas (TCGA) for the detection of a new genetic signature to predict BC prognosis. Profiling of mRNA expression was carried out in samples of patients with TCGA BC (n = 1222). Gene set enrichment research has been undertaken to classify gene sets that vary greatly between BC tissues and normal tissues. Cox models for additive hazards regression were used to classify genes that were strongly linked to overall survival. A subsequent Cox regression multivariate analysis was used to construct a predictive risk parameter model. Kaplan-Meier survival predictions and log-rank validation have been used to verify the value of risk prediction parameters. Seven genes (PGK1, CACNA1H, IL13RA1, SDC1, AK3, NUP43, SDC3) correlated with glycolysis were shown to be strongly linked to overall survival. Depending on the 7-gene-signature, 1222 BC patients were classified into subgroups of high/low-risk. Certain variables have not impaired the prognostic potential of the seven-gene signature. A seven-gene signature correlated with cellular glycolysis was developed to predict the survival of BC patients. The results include insight into cellular glycolysis mechanisms and the detection of patients with poor BC prognosis.