YaHS: yet another Hi-C scaffolding tool

• Published in: Bioinformatics (Oxford, England) Vol. 39; no. 1
• Main Authors: Zhou, Chenxi, McCarthy, Shane A, Durbin, Richard
• Format: Journal Article
• Language: English
• Published: England Oxford University Press 01.01.2023; Oxford Publishing Limited (England)
• Subjects: Assembly; Availability; Bioinformatics; Documentation; Scaffolding; Software; Source code; User requirements

Abstract Summary We present YaHS, a user-friendly command-line tool for the construction of chromosome-scale scaffolds from Hi-C data. It can be run with a single-line command, requires minimal input from users (an assembly file and an alignment file) which is compatible with similar tools and provi...