Novel pathogenic genomic variants leading to autosomal dominant and recessive Robinow syndrome
Robinow syndrome (RS) is a genetically heterogeneous disorder characterized by skeletal dysplasia and a distinctive facial appearance. Previous studies have revealed locus heterogeneity with rare variants in DVL1, DVL3, FZD2, NXN, ROR2, and WNT5A underlying the etiology of RS. The aforementioned “Ro...
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Published in | American journal of medical genetics. Part A Vol. 185; no. 12; pp. 3593 - 3600 |
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Main Authors | , , , , , , , , , , , , |
Format | Journal Article |
Language | English |
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Hoboken, USA
John Wiley & Sons, Inc
01.12.2021
Wiley Subscription Services, Inc |
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Online Access | Get full text |
ISSN | 1552-4825 1552-4833 1552-4833 |
DOI | 10.1002/ajmg.a.61908 |
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Abstract | Robinow syndrome (RS) is a genetically heterogeneous disorder characterized by skeletal dysplasia and a distinctive facial appearance. Previous studies have revealed locus heterogeneity with rare variants in DVL1, DVL3, FZD2, NXN, ROR2, and WNT5A underlying the etiology of RS. The aforementioned “Robinow‐associated genes” and their gene products all play a role in the WNT/planar cell polarity signaling pathway. We performed gene‐targeted Sanger sequencing, exome sequencing, genome sequencing, and array comparative genomic hybridization on four subjects with a clinical diagnosis of RS who had not had prior DNA testing. Individuals in our cohort were found to carry pathogenic or likely pathogenic variants in three RS related genes: DVL1, ROR2, and NXN. One subject was found to have a nonsense variant (c.817C > T [p.Gln273*]) in NXN in trans with an ~1 Mb telomeric deletion on chromosome 17p containing NXN, which supports our contention that biallelic NXN variant alleles are responsible for a novel autosomal recessive RS locus. These findings provide increased understanding of the role of WNT signaling in skeletal development and maintenance. These data further support the hypothesis that dysregulation of the noncanonical WNT pathway in humans gives rise to RS. |
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AbstractList | Robinow syndrome (RS) is a genetically heterogeneous disorder characterized by skeletal dysplasia and a distinctive facial appearance. Previous studies have revealed locus heterogeneity with rare variants in DVL1, DVL3, FZD2, NXN, ROR2, and WNT5A underlying the etiology of RS. The aforementioned “Robinow‐associated genes” and their gene products all play a role in the WNT/planar cell polarity signaling pathway. We performed gene‐targeted Sanger sequencing, exome sequencing, genome sequencing, and array comparative genomic hybridization on four subjects with a clinical diagnosis of RS who had not had prior DNA testing. Individuals in our cohort were found to carry pathogenic or likely pathogenic variants in three RS related genes: DVL1, ROR2, and NXN. One subject was found to have a nonsense variant (c.817C > T [p.Gln273*]) in NXN in trans with an ~1 Mb telomeric deletion on chromosome 17p containing NXN, which supports our contention that biallelic NXN variant alleles are responsible for a novel autosomal recessive RS locus. These findings provide increased understanding of the role of WNT signaling in skeletal development and maintenance. These data further support the hypothesis that dysregulation of the noncanonical WNT pathway in humans gives rise to RS. Robinow syndrome (RS) is a genetically heterogeneous disorder characterized by skeletal dysplasia and a distinctive facial appearance. Previous studies have revealed locus heterogeneity with rare variants in DVL1, DVL3, FZD2, NXN, ROR2, and WNT5A underlying the etiology of RS. The aforementioned "Robinow-associated genes" and their gene products all play a role in the WNT/planar cell polarity signaling pathway. We performed gene-targeted Sanger sequencing, exome sequencing, genome sequencing, and array comparative genomic hybridization on four subjects with a clinical diagnosis of RS who had not had prior DNA testing. Individuals in our cohort were found to carry pathogenic or likely pathogenic variants in three RS related genes: DVL1, ROR2, and NXN. One subject was found to have a nonsense variant (c.817C > T [p.Gln273*]) in NXN in trans with an ~1 Mb telomeric deletion on chromosome 17p containing NXN, which supports our contention that biallelic NXN variant alleles are responsible for a novel autosomal recessive RS locus. These findings provide increased understanding of the role of WNT signaling in skeletal development and maintenance. These data further support the hypothesis that dysregulation of the noncanonical WNT pathway in humans gives rise to RS.Robinow syndrome (RS) is a genetically heterogeneous disorder characterized by skeletal dysplasia and a distinctive facial appearance. Previous studies have revealed locus heterogeneity with rare variants in DVL1, DVL3, FZD2, NXN, ROR2, and WNT5A underlying the etiology of RS. The aforementioned "Robinow-associated genes" and their gene products all play a role in the WNT/planar cell polarity signaling pathway. We performed gene-targeted Sanger sequencing, exome sequencing, genome sequencing, and array comparative genomic hybridization on four subjects with a clinical diagnosis of RS who had not had prior DNA testing. Individuals in our cohort were found to carry pathogenic or likely pathogenic variants in three RS related genes: DVL1, ROR2, and NXN. One subject was found to have a nonsense variant (c.817C > T [p.Gln273*]) in NXN in trans with an ~1 Mb telomeric deletion on chromosome 17p containing NXN, which supports our contention that biallelic NXN variant alleles are responsible for a novel autosomal recessive RS locus. These findings provide increased understanding of the role of WNT signaling in skeletal development and maintenance. These data further support the hypothesis that dysregulation of the noncanonical WNT pathway in humans gives rise to RS. Robinow syndrome (RS) is a genetically heterogeneous disorder characterized by skeletal dysplasia and a distinctive facial appearance. Previous studies have revealed locus heterogeneity with rare variants in DVL1 , DVL3 , FZD2 , NXN , ROR2 , and WNT5A underlying the etiology of RS. The aforementioned “Robinow‐associated genes” and their gene products all play a role in the WNT/planar cell polarity signaling pathway. We performed gene‐targeted Sanger sequencing, exome sequencing, genome sequencing, and array comparative genomic hybridization on four subjects with a clinical diagnosis of RS who had not had prior DNA testing. Individuals in our cohort were found to carry pathogenic or likely pathogenic variants in three RS related genes: DVL1 , ROR2 , and NXN . One subject was found to have a nonsense variant (c.817C > T [p.Gln273*]) in NXN in trans with an ~1 Mb telomeric deletion on chromosome 17p containing NXN , which supports our contention that biallelic NXN variant alleles are responsible for a novel autosomal recessive RS locus. These findings provide increased understanding of the role of WNT signaling in skeletal development and maintenance. These data further support the hypothesis that dysregulation of the noncanonical WNT pathway in humans gives rise to RS. Robinow syndrome (RS) is a genetically heterogeneous disorder characterized by skeletal dysplasia and a distinctive facial appearance. Previous studies have revealed locus heterogeneity with rare variants in DVL1 , DVL3 , FZD2 , NXN , ROR2 , and WNT5A underlying the etiology of RS. The aforementioned ‘Robinow associated genes’ and their gene products all play a role in the WNT/planar cell polarity (PCP) signaling pathway. We performed gene-targeted Sanger sequencing, exome sequencing (ES), genome sequencing (GS) and array comparative genomic hybridization (aCGH) on four subjects with a clinical diagnosis of RS who had not had prior DNA testing. Individuals in our cohort were found to carry pathogenic or likely pathogenic variants in three RS related genes: DVL1, ROR2 and NXN . One subject was found to have a nonsense variant (c.817C>T [p.Gln273*]) in NXN in trans with an ∼1 Mb telomeric deletion on chromosome 17p containing NXN , which supports our contention that biallelic NXN variant alleles are responsible for a novel autosomal recessive RS locus. These findings provide increased understanding of the role of WNT signaling in skeletal development and maintenance. These data further support the hypothesis that dysregulation of the noncanonical WNT pathway in humans gives rise to RS. Robinow syndrome (RS) is a genetically heterogeneous disorder characterized by skeletal dysplasia and a distinctive facial appearance. Previous studies have revealed locus heterogeneity with rare variants in DVL1, DVL3, FZD2, NXN, ROR2, and WNT5A underlying the etiology of RS. The aforementioned “Robinow‐associated genes” and their gene products all play a role in the WNT/planar cell polarity signaling pathway. We performed gene‐targeted Sanger sequencing, exome sequencing, genome sequencing, and array comparative genomic hybridization on four subjects with a clinical diagnosis of RS who had not had prior DNA testing. Individuals in our cohort were found to carry pathogenic or likely pathogenic variants in three RS related genes: DVL1, ROR2, and NXN. One subject was found to have a nonsense variant (c.817C > T [p.Gln273*]) in NXN in trans with an ~1 Mb telomeric deletion on chromosome 17p containing NXN, which supports our contention that biallelic NXN variant alleles are responsible for a novel autosomal recessive RS locus. These findings provide increased understanding of the role of WNT signaling in skeletal development and maintenance. These data further support the hypothesis that dysregulation of the noncanonical WNT pathway in humans gives rise to RS. |
Author | Zhang, Chaofan Grochowski, Christopher M. Gibbs, Richard A. Muzny, Donna M. White, Janson Akdemir, Zeynep C. Lindstrand, Anna Mazzeu, Juliana F. Eisfeldt, Jesper Jhangiani, Shalini N. Lupski, James R. Sutton, V. Reid Carvalho, Claudia M. B. |
AuthorAffiliation | 7 Science for Life Laboratory, Karolinska Institutet, Stockholm, Sweden 9 Texas Children’s Hospital, Houston, TX 3 Robinow Syndrome Foundation, Anoka, MN 6 Center for Molecular Medicine, Karolinska Institutet, Stockholm, Sweden 2 University of Brasilia, Brasilia, Brazil 11 Pacific Northwest Research Institute (PNRI), Seattle, WA 4 Department of Clinical Genetics, Karolinska University Hospital, Stockholm, Sweden 8 Human Genome Sequencing Center, BCM, Houston, TX 10 Department of Pediatrics, BCM, Houston, TX 1 Department of Molecular and Human Genetics, BCM, Houston, TX 5 Department of Molecular Medicine and Surgery, Karolinska Institutet, Stockholm, Sweden |
AuthorAffiliation_xml | – name: 1 Department of Molecular and Human Genetics, BCM, Houston, TX – name: 7 Science for Life Laboratory, Karolinska Institutet, Stockholm, Sweden – name: 9 Texas Children’s Hospital, Houston, TX – name: 4 Department of Clinical Genetics, Karolinska University Hospital, Stockholm, Sweden – name: 8 Human Genome Sequencing Center, BCM, Houston, TX – name: 11 Pacific Northwest Research Institute (PNRI), Seattle, WA – name: 3 Robinow Syndrome Foundation, Anoka, MN – name: 5 Department of Molecular Medicine and Surgery, Karolinska Institutet, Stockholm, Sweden – name: 6 Center for Molecular Medicine, Karolinska Institutet, Stockholm, Sweden – name: 10 Department of Pediatrics, BCM, Houston, TX – name: 2 University of Brasilia, Brasilia, Brazil |
Author_xml | – sequence: 1 givenname: Chaofan orcidid: 0000-0003-0504-5999 surname: Zhang fullname: Zhang, Chaofan organization: Baylor College of Medicine – sequence: 2 givenname: Juliana F. orcidid: 0000-0002-6161-0510 surname: Mazzeu fullname: Mazzeu, Juliana F. organization: Robinow Syndrome Foundation – sequence: 3 givenname: Jesper surname: Eisfeldt fullname: Eisfeldt, Jesper organization: Karolinska Institutet – sequence: 4 givenname: Christopher M. orcidid: 0000-0002-3884-7720 surname: Grochowski fullname: Grochowski, Christopher M. organization: Baylor College of Medicine – sequence: 5 givenname: Janson surname: White fullname: White, Janson organization: Baylor College of Medicine – sequence: 6 givenname: Zeynep C. surname: Akdemir fullname: Akdemir, Zeynep C. organization: Baylor College of Medicine – sequence: 7 givenname: Shalini N. surname: Jhangiani fullname: Jhangiani, Shalini N. organization: Baylor College of Medicine – sequence: 8 givenname: Donna M. surname: Muzny fullname: Muzny, Donna M. organization: Baylor College of Medicine – sequence: 9 givenname: Richard A. orcidid: 0000-0002-1356-5698 surname: Gibbs fullname: Gibbs, Richard A. organization: Baylor College of Medicine – sequence: 10 givenname: Anna surname: Lindstrand fullname: Lindstrand, Anna organization: Karolinska Institutet – sequence: 11 givenname: James R. orcidid: 0000-0001-9907-9246 surname: Lupski fullname: Lupski, James R. organization: Baylor College of Medicine – sequence: 12 givenname: V. Reid surname: Sutton fullname: Sutton, V. Reid organization: Texas Children's Hospital – sequence: 13 givenname: Claudia M. B. orcidid: 0000-0002-2090-298X surname: Carvalho fullname: Carvalho, Claudia M. B. email: ccarvalho@pnri.org organization: Pacific Northwest Research Institute (PNRI) |
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Keywords | clinical diagnosis missense deletion structural variant skeletal dysplasia |
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Notes | Funding information Eunice Kennedy Shriver National Institute of Child Health and Human Development, Grant/Award Number: R03HD092569; National Human Genome Research Institute, Grant/Award Number: UM1HG006542; National Institute of Neurological Disorders and Stroke, Grant/Award Number: R35 NS105078; Swedish Research Council, Grant/Award Number: 2017‐02936 ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 14 content type line 23 Author Contributions C.Z., J.R.L. and C.M.B.C.: designed the study and take responsibility for the integrity of the data and accuracy of the data analysis. C.Z., J.F.M., C.M.G., J.W., V.R.S. and C.M.B.C.: collected the data. J.E. and A.L.: performed genome sequencing and structural variant analysis. Z.C.A., S.N.J., D.M.M., and R.A.G.: performed exome sequencing and variant annotation. C.Z.: analyzed data and wrote the initial manuscript draft. J.R.L., V.R.S. and C.M.B.C.: provided critical input into the writing of the manuscript. All the authors: were involved in reviewing and revising the final submitted manuscript. |
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Snippet | Robinow syndrome (RS) is a genetically heterogeneous disorder characterized by skeletal dysplasia and a distinctive facial appearance. Previous studies have... |
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SubjectTerms | Bone dysplasia Chromosome 17 Chromosome deletion Chromosomes, Human, Pair 17 - genetics clinical diagnosis Comparative Genomic Hybridization Craniofacial Abnormalities - genetics Craniofacial Abnormalities - physiopathology deletion Dishevelled protein Dishevelled Proteins - genetics Dwarfism - genetics Dwarfism - physiopathology Dysplasia Etiology Female Genes Genes, Dominant - genetics Genes, Recessive - genetics Genetic Heterogeneity Genetic Predisposition to Disease Genomic Structural Variation - genetics Genomics Humans Hybridization Limb Deformities, Congenital - genetics Limb Deformities, Congenital - physiopathology Male missense Oxidoreductases - genetics Polarity Receptor Tyrosine Kinase-like Orphan Receptors - genetics Signal transduction skeletal dysplasia Skeleton structural variant Urogenital Abnormalities - genetics Urogenital Abnormalities - physiopathology Whole Exome Sequencing Whole Genome Sequencing Wnt protein Wnt Signaling Pathway - genetics |
Title | Novel pathogenic genomic variants leading to autosomal dominant and recessive Robinow syndrome |
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