Effects of Habitat Fragmentation on Effective Population Size in the Endangered Rio Grande Silvery Minnow

We assessed spatial and temporal patterns of genetic diversity to evaluate effects of river fragmentation on remnant populations of the federally endangered Rio Grande silvery minnow (Hybognathus amarus). Analysis of microsatellite and mitochondrial DNA detected little spatial genetic structure over...

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Bibliographic Details
Published inConservation biology Vol. 19; no. 4; pp. 1138 - 1148
Main Authors ALÒ, DOMINIQUE, TURNER, THOMAS F.
Format Journal Article
LanguageEnglish
Published 350 Main Street , Malden , MA 02148 , USA , and 9600 Garsington Road , Oxford OX4 2DQ , UK Blackwell Publishing, Inc 01.08.2005
Blackwell Science
Blackwell
Blackwell Publishing Ltd
Subjects
adults
analytical methods
Animal and plant ecology
Animal populations
Animal, plant and microbial ecology
Applied ecology
Biological and medical sciences
Conservation biology
Conservation, protection and management of environment and wildlife
Demography
Deoxyribonucleic acid
diversidad genética
Diversion dams
DNA
downstream transport
Ecological genetics
eggs
Emigration
Endangered & extinct species
Evolutionary genetics
Fish
fragmentación del río
Fresh water ecosystems
Freshwater
Fundamental and applied biological sciences. Psychology
gene flow
Genetic diversity
Genetic structure
genetic variation
Habitat fragmentation
Habitats
Hybognathus amarus
Larvae
Life history
microsatellite repeats
Minnows
Mitochondrial DNA
mortality
Parks, reserves, wildlife conservation. Endangered species: population survey and restocking
Population estimates
Population genetics
Population number
Population size
Reproduction
river fragmentation
Rivers
río abajo transporte
Spawning
Synecology
variance
Rio Grande
USA, New Mexico
Brazil, Rio Grande do Sul, Rio Grande
Endangered species
downstream transport
Population number
Hybognathus amarus
Genetic diversity
Rivers
Biodiversity
Fragmentation
Freshwater environment
Vertebrata
Pisces
river fragmentation
Phoxinus phoxinus
Habitat
Transport
Downstream
Environmental protection
Online AccessGet full text
ISSN0888-8892
1523-1739
DOI10.1111/j.1523-1739.2005.00081.x

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Abstract We assessed spatial and temporal patterns of genetic diversity to evaluate effects of river fragmentation on remnant populations of the federally endangered Rio Grande silvery minnow (Hybognathus amarus). Analysis of microsatellite and mitochondrial DNA detected little spatial genetic structure over the current geographic range, consistent with high gene flow despite fragmentation by dams. Maximum-likelihood analysis of temporal genetic data indicated, however, that present-day effective population size (NeV) of the largest extant population of this species was 78 and the ratio of effective size to adult numbers$(N_{eV}/N)$was$\sim 0.001$during the study period (1999 to 2001). Coalescent-based analytical methods provided an estimate of historical (river fragmentation was completed in 1975) effective size (NeI) that ranged between 105and 106. We propose that disparity between contemporary and historical estimates of Neand low contemporary Ne/N result from recent changes in demography related to river fragmentation. Rio Grande silvery minnows produce pelagic eggs and larvae subject to downstream transport through diversion dams. This life-history feature results in heavy losses of yearly reproductive effort to emigration and mortality, and extremely large variance in reproductive success among individuals and spawning localities. Interaction of pelagic early life history and river fragmentation has altered demographic and genetic dynamics of remnant populations and reduced Neto critically low values over ecological time.
AbstractList We assessed spatial and temporal patterns of genetic diversity to evaluate effects of river fragmentation on remnant populations of the federally endangered Rio Grande silvery minnow (Hybognathus amarus). Analysis of microsatellite and mitochondrial DNA detected little spatial genetic structure over the current geographic range, consistent with high gene flow despite fragmentation by dams. Maximum-likelihood analysis of temporal genetic data indicated, however, that present-day effective population size (N sub(eV)) of the largest extant population of this species was 78 and the ratio of effective size to adult numbers (N sub(eV)-N) was similar to 0.001 during the study period (1999 to 2001). Coalescent-based analytical methods provided an estimate of historical (river fragmentation was completed in 1975) effective size (N sub(eI) ) that ranged between 10 super(5) and 10 super(6). We propose that disparity between contemporary and historical estimates of N sub(e) and low contemporary N sub(e)-N result from recent changes in demography related to river fragmentation. Rio Grande silvery minnows produce pelagic eggs and larvae subject to downstream transport through diversion dams. This life-history feature results in heavy losses of yearly reproductive effort to emigration and mortality, and extremely large variance in reproductive success among individuals and spawning localities. Interaction of pelagic early life history and river fragmentation has altered demographic and genetic dynamics of remnant populations and reduced N sub(e) to critically low values over ecological time.Original Abstract: Estimamos los patrones espaciales y temporales de diversidad genetica para evaluar los efectos de la fragmentacion del rio sobre poblaciones remanentes del pez Hybognathus amarus federalmente en peligro. El analisis de ADN microsatelite y mitocondrial detecto escasa estructura genetica espacial en su rango de distribucion actual, lo que es consistente con un alto flujo genico a pesar de la fragmentacion por presas. Sin embargo, los analisis de probabilidad maxima de datos geneticos temporales indicaron que el tamano poblacional efectivo actual (N sub(eV)) de la poblacion mas grande era 78 y la relacion tamano efectivo - numero de adultos (N sub(eV)-N) fue similar to 0.001 durante el periodo de estudio (1999 - 2001) Metodos analiticos coalescentes proporcionaron una estimacion del tamano efectivo historico (N sub(eI)) (la fragmentacion del rio termino en 1975) que vario entre 10 super(5) y 10 super(6). Proponemos que la disparidad entre las estimaciones historicas y contemporaneas de N sub(e) y la baja N sub(e)-N contemporanea resultan de cambios recientes en la demografia relacionados con la fragmentacion del rio. Hybognathus amarus produce huevos y larvas pelagicas que son transportadas rio abajo a traves de presas de desvio. Esta caracteristica de la historia de vida resulta en fuertes perdidas de esfuerzo reproductivo por emigracion y mortalidad, y en una varianza extremadamente amplia en el exito reproductivo entre individuos y sitios de desove. La interaccion de la historia de vida pelagica y la fragmentacion del rio ha alterado la dinamica demografica y genetica de las poblaciones remanentes y ha reducido a N sub(e) a valores criticamente bajos en tiempo ecologico.
We assessed spatial and temporal patterns of genetic diversity to evaluate effects of river fragmentation on remnant populations of the federally endangered Rio Grande silvery minnow (Hybognathus amarus). Analysis of microsatellite and mitochondrial DNA detected little spatial genetic structure over the current geographic range, consistent with high gene flow despite fragmentation by dams. Maximum-likelihood analysis of temporal genetic data indicated, however, that present-day effective population size ( NeV) of the largest extant population of this species was 78 and the ratio of effective size to adult numbers ( NeV/N) was ~ 0.001 during the study period (1999 to 2001). Coalescent-based analytical methods provided an estimate of historical (river fragmentation was completed in 1975) effective size ( NeI ) that ranged between 105 and 106. We propose that disparity between contemporary and historical estimates of Neand low contemporary Ne/N result from recent changes in demography related to river fragmentation. Rio Grande silvery minnows produce pelagic eggs and larvae subject to downstream transport through diversion dams. This life-history feature results in heavy losses of yearly reproductive effort to emigration and mortality, and extremely large variance in reproductive success among individuals and spawning localities. Interaction of pelagic early life history and river fragmentation has altered demographic and genetic dynamics of remnant populations and reduced Neto critically low values over ecological time. [PUBLICATION ABSTRACT]
:  We assessed spatial and temporal patterns of genetic diversity to evaluate effects of river fragmentation on remnant populations of the federally endangered Rio Grande silvery minnow (Hybognathus amarus). Analysis of microsatellite and mitochondrial DNA detected little spatial genetic structure over the current geographic range, consistent with high gene flow despite fragmentation by dams. Maximum‐likelihood analysis of temporal genetic data indicated, however, that present‐day effective population size (NeV) of the largest extant population of this species was 78 and the ratio of effective size to adult numbers (NeV/N) was ∼ 0.001 during the study period (1999 to 2001). Coalescent‐based analytical methods provided an estimate of historical (river fragmentation was completed in 1975) effective size (NeI ) that ranged between 105 and 106. We propose that disparity between contemporary and historical estimates of Neand low contemporary Ne/N result from recent changes in demography related to river fragmentation. Rio Grande silvery minnows produce pelagic eggs and larvae subject to downstream transport through diversion dams. This life‐history feature results in heavy losses of yearly reproductive effort to emigration and mortality, and extremely large variance in reproductive success among individuals and spawning localities. Interaction of pelagic early life history and river fragmentation has altered demographic and genetic dynamics of remnant populations and reduced Neto critically low values over ecological time. Resumen:  Estimamos los patrones espaciales y temporales de diversidad genética para evaluar los efectos de la fragmentación del río sobre poblaciones remanentes del pez Hybognathus amarus federalmente en peligro. El análisis de ADN microsatélite y mitocondrial detectó escasa estructura genética espacial en su rango de distribución actual, lo que es consistente con un alto flujo génico a pesar de la fragmentación por presas. Sin embargo, los análisis de probabilidad máxima de datos genéticos temporales indicaron que el tamaño poblacional efectivo actual (NeV) de la población más grande era 78 y la relación tamaño efectivo – número de adultos (NeV/N) fue ∼ 0.001 durante el período de estudio (1999 – 2001) Métodos analíticos coalescentes proporcionaron una estimación del tamaño efectivo histórico (NeI ) (la fragmentación del río terminó en 1975) que varió entre 105 y 106. Proponemos que la disparidad entre las estimaciones históricas y contemporáneas de Ney la baja Ne/N contemporánea resultan de cambios recientes en la demografía relacionados con la fragmentación del río. Hybognathus amarus produce huevos y larvas pelágicas que son transportadas río abajo a través de presas de desvío. Esta característica de la historia de vida resulta en fuertes pérdidas de esfuerzo reproductivo por emigración y mortalidad, y en una varianza extremadamente amplia en el éxito reproductivo entre individuos y sitios de desove. La interacción de la historia de vida pelágica y la fragmentación del río ha alterado la dinámica demográfica y genética de las poblaciones remanentes y ha reducido a Nea valores críticamente bajos en tiempo ecológico.
We assessed spatial and temporal patterns of genetic diversity to evaluate effects of river fragmentation on remnant populations of the federally endangered Rio Grande silvery minnow (Hybognathus amarus). Analysis of microsatellite and mitochondrial DNA detected little spatial genetic structure over the current geographic range, consistent with high gene flow despite fragmentation by dams. Maximum‐likelihood analysis of temporal genetic data indicated, however, that present‐day effective population size (NₑV) of the largest extant population of this species was 78 and the ratio of effective size to adult numbers (NₑV/N) was ∼ 0.001 during the study period (1999 to 2001). Coalescent‐based analytical methods provided an estimate of historical (river fragmentation was completed in 1975) effective size (NₑI ) that ranged between 10⁵ and 10⁶. We propose that disparity between contemporary and historical estimates of Nₑand low contemporary Nₑ/N result from recent changes in demography related to river fragmentation. Rio Grande silvery minnows produce pelagic eggs and larvae subject to downstream transport through diversion dams. This life‐history feature results in heavy losses of yearly reproductive effort to emigration and mortality, and extremely large variance in reproductive success among individuals and spawning localities. Interaction of pelagic early life history and river fragmentation has altered demographic and genetic dynamics of remnant populations and reduced Nₑto critically low values over ecological time.
We assessed spatial and temporal patterns of genetic diversity to evaluate effects of river fragmentation on remnant populations of the federally endangered Rio Grande silvery minnow (Hybognathus amarus). Analysis of microsatellite and mitochondrial DNA detected little spatial genetic structure over the current geographic range, consistent with high gene flow despite fragmentation by dams. Maximum-likelihood analysis of temporal genetic data indicated, however, that present-day effective population size (NeV) of the largest extant population of this species was 78 and the ratio of effective size to adult numbers$(N_{eV}/N)$was$\sim 0.001$during the study period (1999 to 2001). Coalescent-based analytical methods provided an estimate of historical (river fragmentation was completed in 1975) effective size (NeI) that ranged between 105and 106. We propose that disparity between contemporary and historical estimates of Neand low contemporary Ne/N result from recent changes in demography related to river fragmentation. Rio Grande silvery minnows produce pelagic eggs and larvae subject to downstream transport through diversion dams. This life-history feature results in heavy losses of yearly reproductive effort to emigration and mortality, and extremely large variance in reproductive success among individuals and spawning localities. Interaction of pelagic early life history and river fragmentation has altered demographic and genetic dynamics of remnant populations and reduced Neto critically low values over ecological time.
We assessed spatial and temporal patterns of genetic diversity to evaluate effects of river fragmentation on remnant populations of the federally endangered Rio Grande silvery minnow ( Hybognathus amarus ). Analysis of microsatellite and mitochondrial DNA detected little spatial genetic structure over the current geographic range, consistent with high gene flow despite fragmentation by dams. Maximum‐likelihood analysis of temporal genetic data indicated, however, that present‐day effective population size ( N eV ) of the largest extant population of this species was 78 and the ratio of effective size to adult numbers ( N eV /N ) was ∼ 0.001 during the study period (1999 to 2001). Coalescent‐based analytical methods provided an estimate of historical (river fragmentation was completed in 1975) effective size ( N eI  ) that ranged between 10 5 and 10 6 . We propose that disparity between contemporary and historical estimates of N e and low contemporary N e /N result from recent changes in demography related to river fragmentation. Rio Grande silvery minnows produce pelagic eggs and larvae subject to downstream transport through diversion dams. This life‐history feature results in heavy losses of yearly reproductive effort to emigration and mortality, and extremely large variance in reproductive success among individuals and spawning localities. Interaction of pelagic early life history and river fragmentation has altered demographic and genetic dynamics of remnant populations and reduced N e to critically low values over ecological time.
Author ALÒ, DOMINIQUE
TURNER, THOMAS F.
Author_xml – sequence: 1
  givenname: DOMINIQUE
  surname: ALÒ
  fullname: ALÒ, DOMINIQUE
  organization: Department of Biology and Museum of Southwestern Biology, University of New Mexico, Albuquerque, NM 87131, U.S.A
– sequence: 2
  givenname: THOMAS F.
  surname: TURNER
  fullname: TURNER, THOMAS F.
  email: turnert@unm.edu
  organization: Department of Biology and Museum of Southwestern Biology, University of New Mexico, Albuquerque, NM 87131, U.S.A
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IngestDate Fri Jul 11 11:21:38 EDT 2025
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Wed Oct 30 09:58:14 EDT 2024
IsPeerReviewed true
IsScholarly true
Issue 4
Keywords Endangered species
downstream transport
Population number
Hybognathus amarus
Genetic diversity
Rivers
Biodiversity
Fragmentation
Freshwater environment
Vertebrata
Pisces
river fragmentation
Phoxinus phoxinus
Habitat
Transport
Downstream
Environmental protection
Language English
License CC BY 4.0
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PublicationCentury 2000
PublicationDate August 2005
PublicationDateYYYYMMDD 2005-08-01
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  year: 2005
  text: August 2005
PublicationDecade 2000
PublicationPlace 350 Main Street , Malden , MA 02148 , USA , and 9600 Garsington Road , Oxford OX4 2DQ , UK
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PublicationTitle Conservation biology
PublicationYear 2005
Publisher Blackwell Publishing, Inc
Blackwell Science
Blackwell
Blackwell Publishing Ltd
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References Kingman , J. F. C. 1982 . The coalescent . Stochastic Processes and their Applications 13 : 235 - 248 .
Lande , R. 1988 . Genetics and demography in biological conservation . Science 241 : 1455 - 1460 .
Lavery , S. , C. Moritz , and D. R. Fielder . 1996 . Genetic patterns suggest exponential population growth in a declining species . Molecular Biology and Evolution 13 : 1106 - 1113 .
Kuhner , M. K. , J. Yamato , and J. Felsenstein . 1998 . Maximum likelihood estimation of population growth rates based on the coalescent . Genetics 149 : 429 - 434 .
Speirs , D. C. , and W. S. C. Gurney . 2001 . Population persistence in rivers and estuaries . Ecology 82 : 1219 - 1237 .
Higgins , K. , and M. Lynch . 2001 . Metapopulation extinction caused by mutation accumulation . Proceedings of the National Academy of Sciences of the United States of America 98 : 2928 - 2933 .
Turner , T. F. , J. P. Wares , and J. R. Gold . 2002 . Genetic effective size is three orders of magnitude smaller than adult census size in an abundant, estuarine-dependent marine fish (Sciaenops ocellatus) . Genetics 162 : 1329 - 1339 .
Weir , B. S. , and C. C. Cockerham . 1984 . Estimating F-statistics for the analysis of population structure . Evolution 38 : 1358 - 1370 .
Dunham , J. B. , and B. E. Rieman . 1999 . Metapopulation structure of bull trout: influences of physical, biotic, and geometrical landscape characteristics . Ecological Applications 9 : 642 - 655 .
Westemeier R. L. , Brawn J. D. , Simpson S. A. , Esker T. L. , Jansen R. W. , Walk J. W. , Kershner E. L. , Bouzat J. L. , and K. N. Paige . 1998 . Tracking the long-term decline and recovery of an isolated population . Science 282 : 1695 - 1698 .
Luttrell , G. R. , A. A. Echelle , W. L. Fisher , and D. J. Eisenhour . 1999 . Declining status of two species of the Macrhybopsis aestivalis complex (Teleostei: Cyprinidae) in the Arkansas River Basin and related effects of reservoirs as barriers to dispersal . Copeia 1999 : 981 - 989 .
Avise , J. C. 2000 . Phylogeography: the history and formation of species . Harvard University Press , Cambridge , Massachusetts .
Sunnucks , P. , A. C. C. Wilson , L. B. Beheregaray , K. Zenger , J. French , and A. C. Taylor . 2000 . SSCP is not so difficult: the application and utility of single-stranded conformation polymorphism in evolutionary biology and molecular ecology . Molecular Ecology 9 : 1699 - 1710 .
Nei , M. , and F. Tajima . 1981 . Genetic drift and estimation of effective population size . Genetics 98 : 625 - 640 .
Whitlock , M. C. , and N. H. Barton . 1997 . The effective size of a subdivided population . Genetics 146 : 427 - 441 .
Platania , S. P. , and C. S. Altenbach . 1998 . Reproductive strategies and egg types of seven Rio Grande Basin cyprinids . Copeia 1998 : 559 - 569 .
Raymond , M. , and F. Rousset . 1995 . Genepop (version 1.2)-population-genetics software for exact tests and ecumenicism . Journal of Heredity 86 : 248 - 249 .
Waples , R. S. , 1989 . A generalized approach for estimating effective population size from temporal changes in allele frequency . Genetics 121 : 379 - 391 .
Benke , A. C. 1990 . A perspective on America's vanishing streams . Journal of the North American Benthological Society 9 : 77 - 88 .
Bestgen , K. R. , and S. P. Platania . 1991 . Status and conservation of the Rio Grande silvery minnow, Hybognathus amarus . Southwestern Naturalist 36 : 225 - 232 .
Watterson , G. A. 1975 . On the number of segregating sites in genetical models without recombination . Theoretical Population Biology 7 : 256 - 276 .
Frankham , R. 1995a . Conservation genetics . Annual Review of Genetics 29 : 305 - 327 .
Ballard , J. W. O. , and M. C. Whitlock . 2004 . The incomplete natural history of mitochondria . Molecular Ecology 13 : 729 - 744 .
Luikart , G. , W. B. Sherwin , B. M. Steele , and F. W. Allendorf . 1998 . Usefulness of molecular markers for detecting population bottlenecks via monitoring genetic change . Molecular Ecology 7 : 963 - 974 .
Diffendorfer , J. E. , M. S. Gaines , and R. D. Holt . 1995 . Habitat fragmentation and movements of three small mammals (Sigmodon, Microtus, and Peromyscus) . Ecology 76 : 827 - 839 .
Dynesius , M. , and C. Nilsson . 1994 . Fragmentation and flow regulation of river systems in the northern third of the world . Science 266 : 753 - 762 .
Orive , M. E. 1993 . Effective population size in organisms with complex life histories . Theoretical Population Biology 44 : 316 - 340 .
Bouzat , J. L. , H. A. Lewin , and K. N. Paige . 1998 . The ghost of genetic diversity past: historical DNA analysis of the greater prairie chicken . The American Naturalist 152 : 1 - 6 .
Excoffier , L. , P. E. Smouse , and J. M. Quattro . 1992 . Analysis of molecular variance inferred from metric distances among DNA haplotypes-application to human mitochondrial-DNA restriction data . Genetics 131 : 479 - 491 .
Nunney , L. , and D. R. Elam . 1994 . Estimating the effective size of conserved populations . Conservation Biology 8 : 175 - 184 .
Sivasundar , A. , E. Bermingham , and G. Orti . 2001 . Population structure and biogeography of migratory freshwater fishes (Prochilodus: Characiformes) in major South American rivers . Molecular Ecology 10 : 407 - 417 .
Wang , J. L. , and A. Caballero . 1999 . Developments in predicting the effective size of subdivided populations . Heredity 82 : 212 - 226 .
Garrigan , D. , P. C. Marsh , and T. E. Dowling . 2002 . Long-term effective population size of three endangered Colorado River fishes . Animal Conservation 5 : 95 - 102 .
Rousset , F. 1997 . Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance . Genetics 145 : 1219 - 1228 .
Vitousek , P. M. , H. A. Mooney , J. Lubchenco , and J. M. Melillo . 1997 . Human domination of Earth's ecosystems . Science 277 : 494 - 499 .
Hellberg , M. E. 1994 . Relationships between inferred levels of gene flow and geographic distance in a philopatric coral, Balanophyllia elegans . Evolution 48 : 1829 - 1854 .
Lynch , M. , and W. Gabriel . 1990 . Mutation load and the survival of small populations . Evolution 44 : 1725 - 1737 .
Jager , H. I. , J. A. Chandler , K. B. Lepla , and W. Van Winkle . 2001 . A theoretical study of river fragmentation by dams and its effects on white sturgeon populations . Environmental Biology of Fishes 60 : 347 - 361 .
Wright , S. 1943 . Isolation by distance . Genetics 28 : 139 - 156 .
Brown , W. M. , M. George , and A. C. Wilson . 1979 . Rapid evolution of animal mitochondrial DNA . Proceedings of the National Academy of Sciences of the United States of America 76 : 1967 - 1971
Caballero , A. 1994 . Developments in the prediction of effective population size . Heredity 73 : 657 - 679 .
Platania , S. P. , 1991 . Fishes of the Rio Chama and upper Rio Grande, New Mexico, with preliminary comments on their longitudinal distribution . Southwestern Naturalist 36 : 186 - 193 .
Trevino-Robinson , D. 1959 . The ichthyofauna of the lower Rio Grande, Texas and Mexico . Copeia 1959 : 253 - 256 .
Turner , T. F. , T. E. Dowling , R. E. Broughton , and J. R. Gold . 2004 . Variable microsatellite markers amplify across divergent lineages of cyprinid fishes (subfamily Leusicinae) . Conservation Genetics 5 : 279 - 281 .
Nei , M. 1987 . Molecular evolutionary genetics . Columbia University Press , New York .
Wang , J. L. 2001 . A pseudo-likelihood method for estimating effective population size from temporally spaced samples . Genetical Research 78 : 243 - 257 .
Lande , R. 1995 . Mutation and conservation . Conservation Biology 9 : 782 - 791 .
Crow , J. F. , and C. Denniston . 1988 . Inbreeding and variance effective population numbers . Evolution 42 : 482 - 495 .
Guo , S. W. , and E. A. Thompson . 1992 . Performing the exact test Hardy-Weinberg proportion for multiple alleles . Biometrics 48 : 361 - 372 .
Young A. G. , and G. M. Clark . 2000 . Genetics, demography, and viability of fragmented populations . Cambridge University Press , Cambridge , United Kingdom .
Hanski , I. 1999 . Metapopulation ecology . Oxford University Press , New York .
Wang , J. L. , and M. C. Whitlock . 2003 . Estimating effective population size and migration rates from genetic samples over space and time . Genetics 163 : 429 - 446 .
Frankham , R. 1995b . Effective population size/adult population size ratios in wildlife: a review . Genetical Research 66 : 95 - 107 .
Soulé , M. E. , and L. S. Mills . 1998 . Population genetics: no need to isolate genetics . Science 282 : 1658 - 1659 .
1982; 13
1995a; 29
2000; 9
1995; 76
1997; 277
1995b; 66
2004; 5
1999; 82
1979; 76
1998; 152
1994; 266
1997; 146
2001; 60
1990; 44
1990
2000
1997; 145
1987
1992; 48
1988; 42
1975; 7
1994; 73
1998; 282
2001; 98
2001; 10
2003; 163
1998; 1998
1995; 9
1991; 36
2002; 5
1993; 44
1997
1994
2004
1994; 48
1988; 241
2002
1996; 13
1999; 9
1999
1995; 86
1994; 8
2001; 82
1992; 131
1959; 1959
2002; 162
1984; 38
1999; 1999
1989; 121
2004; 13
1943; 28
1998; 149
1998; 7
2001; 78
1990; 9
1981; 98
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References_xml – reference: Excoffier , L. , P. E. Smouse , and J. M. Quattro . 1992 . Analysis of molecular variance inferred from metric distances among DNA haplotypes-application to human mitochondrial-DNA restriction data . Genetics 131 : 479 - 491 .
– reference: Garrigan , D. , P. C. Marsh , and T. E. Dowling . 2002 . Long-term effective population size of three endangered Colorado River fishes . Animal Conservation 5 : 95 - 102 .
– reference: Watterson , G. A. 1975 . On the number of segregating sites in genetical models without recombination . Theoretical Population Biology 7 : 256 - 276 .
– reference: Luikart , G. , W. B. Sherwin , B. M. Steele , and F. W. Allendorf . 1998 . Usefulness of molecular markers for detecting population bottlenecks via monitoring genetic change . Molecular Ecology 7 : 963 - 974 .
– reference: Rousset , F. 1997 . Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance . Genetics 145 : 1219 - 1228 .
– reference: Vitousek , P. M. , H. A. Mooney , J. Lubchenco , and J. M. Melillo . 1997 . Human domination of Earth's ecosystems . Science 277 : 494 - 499 .
– reference: Ballard , J. W. O. , and M. C. Whitlock . 2004 . The incomplete natural history of mitochondria . Molecular Ecology 13 : 729 - 744 .
– reference: Soulé , M. E. , and L. S. Mills . 1998 . Population genetics: no need to isolate genetics . Science 282 : 1658 - 1659 .
– reference: Wang , J. L. 2001 . A pseudo-likelihood method for estimating effective population size from temporally spaced samples . Genetical Research 78 : 243 - 257 .
– reference: Nunney , L. , and D. R. Elam . 1994 . Estimating the effective size of conserved populations . Conservation Biology 8 : 175 - 184 .
– reference: Higgins , K. , and M. Lynch . 2001 . Metapopulation extinction caused by mutation accumulation . Proceedings of the National Academy of Sciences of the United States of America 98 : 2928 - 2933 .
– reference: Raymond , M. , and F. Rousset . 1995 . Genepop (version 1.2)-population-genetics software for exact tests and ecumenicism . Journal of Heredity 86 : 248 - 249 .
– reference: Sivasundar , A. , E. Bermingham , and G. Orti . 2001 . Population structure and biogeography of migratory freshwater fishes (Prochilodus: Characiformes) in major South American rivers . Molecular Ecology 10 : 407 - 417 .
– reference: Waples , R. S. , 1989 . A generalized approach for estimating effective population size from temporal changes in allele frequency . Genetics 121 : 379 - 391 .
– reference: Frankham , R. 1995b . Effective population size/adult population size ratios in wildlife: a review . Genetical Research 66 : 95 - 107 .
– reference: Turner , T. F. , T. E. Dowling , R. E. Broughton , and J. R. Gold . 2004 . Variable microsatellite markers amplify across divergent lineages of cyprinid fishes (subfamily Leusicinae) . Conservation Genetics 5 : 279 - 281 .
– reference: Jager , H. I. , J. A. Chandler , K. B. Lepla , and W. Van Winkle . 2001 . A theoretical study of river fragmentation by dams and its effects on white sturgeon populations . Environmental Biology of Fishes 60 : 347 - 361 .
– reference: Lavery , S. , C. Moritz , and D. R. Fielder . 1996 . Genetic patterns suggest exponential population growth in a declining species . Molecular Biology and Evolution 13 : 1106 - 1113 .
– reference: Luttrell , G. R. , A. A. Echelle , W. L. Fisher , and D. J. Eisenhour . 1999 . Declining status of two species of the Macrhybopsis aestivalis complex (Teleostei: Cyprinidae) in the Arkansas River Basin and related effects of reservoirs as barriers to dispersal . Copeia 1999 : 981 - 989 .
– reference: Lande , R. 1988 . Genetics and demography in biological conservation . Science 241 : 1455 - 1460 .
– reference: Platania , S. P. , 1991 . Fishes of the Rio Chama and upper Rio Grande, New Mexico, with preliminary comments on their longitudinal distribution . Southwestern Naturalist 36 : 186 - 193 .
– reference: Speirs , D. C. , and W. S. C. Gurney . 2001 . Population persistence in rivers and estuaries . Ecology 82 : 1219 - 1237 .
– reference: Platania , S. P. , and C. S. Altenbach . 1998 . Reproductive strategies and egg types of seven Rio Grande Basin cyprinids . Copeia 1998 : 559 - 569 .
– reference: Dunham , J. B. , and B. E. Rieman . 1999 . Metapopulation structure of bull trout: influences of physical, biotic, and geometrical landscape characteristics . Ecological Applications 9 : 642 - 655 .
– reference: Bouzat , J. L. , H. A. Lewin , and K. N. Paige . 1998 . The ghost of genetic diversity past: historical DNA analysis of the greater prairie chicken . The American Naturalist 152 : 1 - 6 .
– reference: Dynesius , M. , and C. Nilsson . 1994 . Fragmentation and flow regulation of river systems in the northern third of the world . Science 266 : 753 - 762 .
– reference: Nei , M. , and F. Tajima . 1981 . Genetic drift and estimation of effective population size . Genetics 98 : 625 - 640 .
– reference: Hanski , I. 1999 . Metapopulation ecology . Oxford University Press , New York .
– reference: Turner , T. F. , J. P. Wares , and J. R. Gold . 2002 . Genetic effective size is three orders of magnitude smaller than adult census size in an abundant, estuarine-dependent marine fish (Sciaenops ocellatus) . Genetics 162 : 1329 - 1339 .
– reference: Hellberg , M. E. 1994 . Relationships between inferred levels of gene flow and geographic distance in a philopatric coral, Balanophyllia elegans . Evolution 48 : 1829 - 1854 .
– reference: Wright , S. 1943 . Isolation by distance . Genetics 28 : 139 - 156 .
– reference: Benke , A. C. 1990 . A perspective on America's vanishing streams . Journal of the North American Benthological Society 9 : 77 - 88 .
– reference: Lande , R. 1995 . Mutation and conservation . Conservation Biology 9 : 782 - 791 .
– reference: Trevino-Robinson , D. 1959 . The ichthyofauna of the lower Rio Grande, Texas and Mexico . Copeia 1959 : 253 - 256 .
– reference: Bestgen , K. R. , and S. P. Platania . 1991 . Status and conservation of the Rio Grande silvery minnow, Hybognathus amarus . Southwestern Naturalist 36 : 225 - 232 .
– reference: Kuhner , M. K. , J. Yamato , and J. Felsenstein . 1998 . Maximum likelihood estimation of population growth rates based on the coalescent . Genetics 149 : 429 - 434 .
– reference: Lynch , M. , and W. Gabriel . 1990 . Mutation load and the survival of small populations . Evolution 44 : 1725 - 1737 .
– reference: Brown , W. M. , M. George , and A. C. Wilson . 1979 . Rapid evolution of animal mitochondrial DNA . Proceedings of the National Academy of Sciences of the United States of America 76 : 1967 - 1971
– reference: Frankham , R. 1995a . Conservation genetics . Annual Review of Genetics 29 : 305 - 327 .
– reference: Westemeier R. L. , Brawn J. D. , Simpson S. A. , Esker T. L. , Jansen R. W. , Walk J. W. , Kershner E. L. , Bouzat J. L. , and K. N. Paige . 1998 . Tracking the long-term decline and recovery of an isolated population . Science 282 : 1695 - 1698 .
– reference: Wang , J. L. , and M. C. Whitlock . 2003 . Estimating effective population size and migration rates from genetic samples over space and time . Genetics 163 : 429 - 446 .
– reference: Diffendorfer , J. E. , M. S. Gaines , and R. D. Holt . 1995 . Habitat fragmentation and movements of three small mammals (Sigmodon, Microtus, and Peromyscus) . Ecology 76 : 827 - 839 .
– reference: Sunnucks , P. , A. C. C. Wilson , L. B. Beheregaray , K. Zenger , J. French , and A. C. Taylor . 2000 . SSCP is not so difficult: the application and utility of single-stranded conformation polymorphism in evolutionary biology and molecular ecology . Molecular Ecology 9 : 1699 - 1710 .
– reference: Whitlock , M. C. , and N. H. Barton . 1997 . The effective size of a subdivided population . Genetics 146 : 427 - 441 .
– reference: Orive , M. E. 1993 . Effective population size in organisms with complex life histories . Theoretical Population Biology 44 : 316 - 340 .
– reference: Crow , J. F. , and C. Denniston . 1988 . Inbreeding and variance effective population numbers . Evolution 42 : 482 - 495 .
– reference: Caballero , A. 1994 . Developments in the prediction of effective population size . Heredity 73 : 657 - 679 .
– reference: Guo , S. W. , and E. A. Thompson . 1992 . Performing the exact test Hardy-Weinberg proportion for multiple alleles . Biometrics 48 : 361 - 372 .
– reference: Young A. G. , and G. M. Clark . 2000 . Genetics, demography, and viability of fragmented populations . Cambridge University Press , Cambridge , United Kingdom .
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Snippet We assessed spatial and temporal patterns of genetic diversity to evaluate effects of river fragmentation on remnant populations of the federally endangered...
:  We assessed spatial and temporal patterns of genetic diversity to evaluate effects of river fragmentation on remnant populations of the federally endangered...
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SubjectTerms adults
analytical methods
Animal and plant ecology
Animal populations
Animal, plant and microbial ecology
Applied ecology
Biological and medical sciences
Conservation biology
Conservation, protection and management of environment and wildlife
Demography
Deoxyribonucleic acid
diversidad genética
Diversion dams
DNA
downstream transport
Ecological genetics
eggs
Emigration
Endangered & extinct species
Evolutionary genetics
Fish
fragmentación del río
Fresh water ecosystems
Freshwater
Fundamental and applied biological sciences. Psychology
gene flow
Genetic diversity
Genetic structure
genetic variation
Habitat fragmentation
Habitats
Hybognathus amarus
Larvae
Life history
microsatellite repeats
Minnows
Mitochondrial DNA
mortality
Parks, reserves, wildlife conservation. Endangered species: population survey and restocking
Population estimates
Population genetics
Population number
Population size
Reproduction
river fragmentation
Rivers
río abajo transporte
Spawning
Synecology
variance
Title Effects of Habitat Fragmentation on Effective Population Size in the Endangered Rio Grande Silvery Minnow
URI https://api.istex.fr/ark:/67375/WNG-7QPBZDRM-G/fulltext.pdf
https://www.jstor.org/stable/3591299
https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1523-1739.2005.00081.x
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Volume 19
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