Design and setup of intermittent-flow respirometry system for aquatic organisms
Intermittent‐flow respirometry is an experimental protocol for measuring oxygen consumption in aquatic organisms that utilizes the best features of closed (stop‐flow) and flow‐through respirometry while eliminating (or at least reducing) some of their inherent problems. By interspersing short period...
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| Published in | Journal of fish biology Vol. 88; no. 1; pp. 26 - 50 |
|---|---|
| Main Authors | , , |
| Format | Journal Article |
| Language | English |
| Published |
Oxford, UK
Blackwell Publishing Ltd
01.01.2016
Wiley Subscription Services, Inc |
| Subjects | |
| Online Access | Get full text |
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| Abstract | Intermittent‐flow respirometry is an experimental protocol for measuring oxygen consumption in aquatic organisms that utilizes the best features of closed (stop‐flow) and flow‐through respirometry while eliminating (or at least reducing) some of their inherent problems. By interspersing short periods of closed‐chamber oxygen consumption measurements with regular flush periods, accurate oxygen uptake rate measurements can be made without the accumulation of waste products, particularly carbon dioxide, which may confound results. Automating the procedure with easily available hardware and software further reduces error by allowing many measurements to be made over long periods thereby minimizing animal stress due to acclimation issues. This paper describes some of the fundamental principles that need to be considered when designing and carrying out automated intermittent‐flow respirometry (e.g. chamber size, flush rate, flush time, chamber mixing, measurement periods and temperature control). Finally, recent advances in oxygen probe technology and open source automation software will be discussed in the context of assembling relatively low cost and reliable measurement systems. |
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| AbstractList | Intermittent‐flow respirometry is an experimental protocol for measuring oxygen consumption in aquatic organisms that utilizes the best features of closed (stop‐flow) and flow‐through respirometry while eliminating (or at least reducing) some of their inherent problems. By interspersing short periods of closed‐chamber oxygen consumption measurements with regular flush periods, accurate oxygen uptake rate measurements can be made without the accumulation of waste products, particularly carbon dioxide, which may confound results. Automating the procedure with easily available hardware and software further reduces error by allowing many measurements to be made over long periods thereby minimizing animal stress due to acclimation issues. This paper describes some of the fundamental principles that need to be considered when designing and carrying out automated intermittent‐flow respirometry (
e.g
. chamber size, flush rate, flush time, chamber mixing, measurement periods and temperature control). Finally, recent advances in oxygen probe technology and open source automation software will be discussed in the context of assembling relatively low cost and reliable measurement systems. Intermittent-flow respirometry is an experimental protocol for measuring oxygen consumption in aquatic organisms that utilizes the best features of closed (stop-flow) and flow-through respirometry while eliminating (or at least reducing) some of their inherent problems. By interspersing short periods of closed-chamber oxygen consumption measurements with regular flush periods, accurate oxygen uptake rate measurements can be made without the accumulation of waste products, particularly carbon dioxide, which may confound results. Automating the procedure with easily available hardware and software further reduces error by allowing many measurements to be made over long periods thereby minimizing animal stress due to acclimation issues. This paper describes some of the fundamental principles that need to be considered when designing and carrying out automated intermittent-flow respirometry (e.g. chamber size, flush rate, flush time, chamber mixing, measurement periods and temperature control). Finally, recent advances in oxygen probe technology and open source automation software will be discussed in the context of assembling relatively low cost and reliable measurement systems. Intermittent-flow respirometry is an experimental protocol for measuring oxygen consumption in aquatic organisms that utilizes the best features of closed (stop-flow) and flow-through respirometry while eliminating (or at least reducing) some of their inherent problems. By interspersing short periods of closed-chamber oxygen consumption measurements with regular flush periods, accurate oxygen uptake rate measurements can be made without the accumulation of waste products, particularly carbon dioxide, which may confound results. Automating the procedure with easily available hardware and software further reduces error by allowing many measurements to be made over long periods thereby minimizing animal stress due to acclimation issues. This paper describes some of the fundamental principles that need to be considered when designing and carrying out automated intermittent-flow respirometry (e.g. chamber size, flush rate, flush time, chamber mixing, measurement periods and temperature control). Finally, recent advances in oxygen probe technology and open source automation software will be discussed in the context of assembling relatively low cost and reliable measurement systems.Intermittent-flow respirometry is an experimental protocol for measuring oxygen consumption in aquatic organisms that utilizes the best features of closed (stop-flow) and flow-through respirometry while eliminating (or at least reducing) some of their inherent problems. By interspersing short periods of closed-chamber oxygen consumption measurements with regular flush periods, accurate oxygen uptake rate measurements can be made without the accumulation of waste products, particularly carbon dioxide, which may confound results. Automating the procedure with easily available hardware and software further reduces error by allowing many measurements to be made over long periods thereby minimizing animal stress due to acclimation issues. This paper describes some of the fundamental principles that need to be considered when designing and carrying out automated intermittent-flow respirometry (e.g. chamber size, flush rate, flush time, chamber mixing, measurement periods and temperature control). Finally, recent advances in oxygen probe technology and open source automation software will be discussed in the context of assembling relatively low cost and reliable measurement systems. |
| Author | Bushnell, P. G. Svendsen, M. B. S. Steffensen, J. F. |
| Author_xml | – sequence: 1 givenname: M. B. S. surname: Svendsen fullname: Svendsen, M. B. S. email: mbssvendsen@bio.ku.dk organization: Marine Biological Section, Department of Biology, University of Copenhagen, Strandpromenaden 5, DK-3000, Helsingør, Denmark – sequence: 2 givenname: P. G. surname: Bushnell fullname: Bushnell, P. G. organization: Department of Biological Sciences, Indiana University South Bend, South BendIN, 46634, U.S.A – sequence: 3 givenname: J. F. surname: Steffensen fullname: Steffensen, J. F. organization: Marine Biological Section, Department of Biology, University of Copenhagen, Strandpromenaden 5, DK-3000, Helsingør, Denmark |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/26603018$$D View this record in MEDLINE/PubMed |
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| Copyright | 2015 The Fisheries Society of the British Isles 2015 The Fisheries Society of the British Isles. Journal of Fish Biology © 2016 The Fisheries Society of the British Isles |
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| Keywords | oxygen consumption automated respirometry metabolism |
| Language | English |
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| PublicationTitle | Journal of fish biology |
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| References_xml | – ident: e_1_2_6_1_4_1 doi: 10.1016/0198-0254(84)93289-8 – ident: e_1_2_6_1_16_1 doi: 10.1126/science.1061967 – ident: e_1_2_6_1_31_1 doi: 10.1085/jgp.13.1.27 – ident: e_1_2_6_1_3_1 doi: 10.1139/z64-015 – ident: e_1_2_6_1_12_1 doi: 10.1080/14786445508641925 – ident: e_1_2_6_1_21_1 doi: 10.1139/f78-197 – ident: e_1_2_6_1_23_1 doi: 10.1242/jeb.054205 – start-page: 202 volume-title: Polarographic Oxygen Sensors year: 1983 ident: e_1_2_6_1_41_1 – ident: e_1_2_6_1_33_1 doi: 10.1016/0300-9629(84)90541-3 – ident: e_1_2_6_1_34_1 doi: 10.1007/BF00240272 – ident: e_1_2_6_1_37_1 doi: 10.1139/z11-095 – ident: e_1_2_6_1_22_1 doi: 10.1098/rsbl.2003.0087 – volume-title: Physiology of Respiration year: 1996 ident: e_1_2_6_1_19_1 – ident: e_1_2_6_1_28_1 doi: 10.1016/S1095-6433(01)00484-6 – ident: e_1_2_6_1_40_1 doi: 10.1007/BF00688973 – ident: e_1_2_6_1_10_1 doi: 10.1002/iroh.19140070105 – ident: e_1_2_6_1_6_1 doi: 10.1111/j.1095-8649.2011.03182.x – ident: e_1_2_6_1_7_1 doi: 10.1111/jfb.12845 – ident: e_1_2_6_1_39_1 doi: 10.1007/BF00317760 – ident: e_1_2_6_1_5_1 doi: 10.1016/j.cbpa.2013.01.027 – ident: e_1_2_6_1_20_1 doi: 10.2307/1536988 – ident: e_1_2_6_1_2_1 doi: 10.1139/z64-016 – ident: e_1_2_6_1_14_1 doi: 10.1007/978-3-642-81863-9_12 – ident: e_1_2_6_1_26_1 doi: 10.1177/0748730407311855 – ident: e_1_2_6_2_2_1 – ident: e_1_2_6_1_8_1 doi: 10.1242/jeb.084251 – ident: e_1_2_6_1_38_1 doi: 10.1086/394439 – ident: e_1_2_6_1_25_1 doi: 10.1111/jfb.12171 – volume: 167 start-page: 155 year: 1992 ident: e_1_2_6_1_29_1 article-title: Gas exchange, metabolite status and excess post‐exercise oxygen consumption after repetitive bouts of exhaustive exercise in juvenile rainbow trout publication-title: Journal of Experimental Biology doi: 10.1242/jeb.167.1.155 – ident: e_1_2_6_1_24_1 doi: 10.1086/665982 – ident: e_1_2_6_1_27_1 doi: 10.1111/jfb.12848 – ident: e_1_2_6_1_11_1 doi: 10.1023/A:1025461900063 – ident: e_1_2_6_1_30_1 doi: 10.1242/jeb.197.1.129 – ident: e_1_2_6_1_13_1 doi: 10.1029/JC090iC02p03332 – ident: e_1_2_6_1_17_1 doi: 10.1007/978-3-642-81863-9_14 – ident: e_1_2_6_1_9_1 doi: 10.1016/0146-6291(78)90001-2 – volume: 25 start-page: 140 year: 1967 ident: e_1_2_6_1_18_1 article-title: New tables for oxygen saturation of sea water publication-title: Journal of Marine Research – ident: e_1_2_6_1_15_1 doi: 10.4319/lo.1992.37.6.1307 – ident: e_1_2_6_1_36_1 doi: 10.1017/CBO9781107415324 – ident: e_1_2_6_1_35_1 doi: 10.1152/jappl.1992.72.2.801 – ident: e_1_2_6_1_32_1 doi: 10.1007/BF02995809 |
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| Snippet | Intermittent‐flow respirometry is an experimental protocol for measuring oxygen consumption in aquatic organisms that utilizes the best features of closed... Intermittent-flow respirometry is an experimental protocol for measuring oxygen consumption in aquatic organisms that utilizes the best features of closed... |
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| SubjectTerms | Acclimatization Animals Aquatic organisms automated respirometry Automation Carbon dioxide Carbon Dioxide - metabolism Fishes - physiology metabolism Organisms Oxygen Oxygen - metabolism Oxygen Consumption Oxygen uptake Temperature Temperature control |
| Title | Design and setup of intermittent-flow respirometry system for aquatic organisms |
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