A Comparative Analysis of the Lyve-SET Phylogenomics Pipeline for Genomic Epidemiology of Foodborne Pathogens - Katz, Lee S.; Griswold, Taylor; Williams-Newkirk, Amanda J.; Wagner, Darlene; Petkau, Aaron; Sieffert, Cameron; Van Domselaar, Gary; Deng, Xiangyu; Carleton, Heather A. (Frontiers in Microbiology, 2017)
Keywords: Microbiology; wgMLST; outbreak; genomic epidemiology; bacterial pathogen; foodborne; SNP pipeline