Laser ablation tomography for visualization of root colonization by edaphic organisms

Soil biota have important effects on crop productivity, but can be difficult to study in situ. Laser ablation tomography (LAT) is a novel method that allows for rapid, three-dimensional quantitative and qualitative analysis of root anatomy, providing new opportunities to investigate interactions bet...

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Published inJournal of experimental botany Vol. 70; no. 19; pp. 5327 - 5342
Main Authors Strock, Christopher F., Schneider, Hannah M., Galindo-Castañeda, Tania, Hall, Benjamin T., Van Gansbeke, Bart, Mather, Diane E., Roth, Mitchell G., Chilvers, Martin I., Guo, Xiangrong, Brown, Kathleen, Lynch, Jonathan P.
Format Journal Article
LanguageEnglish
Published UK Oxford University Press 15.10.2019
Subjects
barley
beans
cereal cyst nematode
corn
cyst nematodes
Diabrotica virgifera virgifera
Fusarium
mycorrhizae
Nematoda
Plant—Environment Interactions
qualitative analysis
Research Papers
root anatomy
root phenotyping
soil biota
tomography
vesicular arbuscular mycorrhizae
western corn rootworm
root phenotyping
western corn rootworm
mycorrhizae
Cereal cyst nematode
root anatomy
Fusarium
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Abstract Soil biota have important effects on crop productivity, but can be difficult to study in situ. Laser ablation tomography (LAT) is a novel method that allows for rapid, three-dimensional quantitative and qualitative analysis of root anatomy, providing new opportunities to investigate interactions between roots and edaphic organisms. LAT was used for analysis of maize roots colonized by arbuscular mycorrhizal fungi, maize roots herbivorized by western corn rootworm, barley roots parasitized by cereal cyst nematode, and common bean roots damaged by Fusarium. UV excitation of root tissues affected by edaphic organisms resulted in differential autofluorescence emission, facilitating the classification of tissues and anatomical features. Samples were spatially resolved in three dimensions, enabling quantification of the volume and distribution of fungal colonization, western corn rootworm damage, nematode feeding sites, tissue compromised by Fusarium, and as well as root anatomical phenotypes. Owing to its capability for highthroughput sample imaging, LAT serves as an excellent tool to conduct large, quantitative screens to characterize genetic control of root anatomy and interactions with edaphic organisms. Additionally, this technology improves interpretation of root–organism interactions in relatively large, opaque root segments, providing opportunities for novel research investigating the effects of root anatomical phenes on associations with edaphic organisms.
AbstractList Soil biota have important effects on crop productivity, but can be difficult to study in situ. Laser ablation tomography (LAT) is a novel method that allows for rapid, three-dimensional quantitative and qualitative analysis of root anatomy, providing new opportunities to investigate interactions between roots and edaphic organisms. LAT was used for analysis of maize roots colonized by arbuscular mycorrhizal fungi, maize roots herbivorized by western corn rootworm, barley roots parasitized by cereal cyst nematode, and common bean roots damaged by Fusarium. UV excitation of root tissues affected by edaphic organisms resulted in differential autofluorescence emission, facilitating the classification of tissues and anatomical features. Samples were spatially resolved in three dimensions, enabling quantification of the volume and distribution of fungal colonization, western corn rootworm damage, nematode feeding sites, tissue compromised by Fusarium, and as well as root anatomical phenotypes. Owing to its capability for high-throughput sample imaging, LAT serves as an excellent tool to conduct large, quantitative screens to characterize genetic control of root anatomy and interactions with edaphic organisms. Additionally, this technology improves interpretation of root-organism interactions in relatively large, opaque root segments, providing opportunities for novel research investigating the effects of root anatomical phenes on associations with edaphic organisms.Soil biota have important effects on crop productivity, but can be difficult to study in situ. Laser ablation tomography (LAT) is a novel method that allows for rapid, three-dimensional quantitative and qualitative analysis of root anatomy, providing new opportunities to investigate interactions between roots and edaphic organisms. LAT was used for analysis of maize roots colonized by arbuscular mycorrhizal fungi, maize roots herbivorized by western corn rootworm, barley roots parasitized by cereal cyst nematode, and common bean roots damaged by Fusarium. UV excitation of root tissues affected by edaphic organisms resulted in differential autofluorescence emission, facilitating the classification of tissues and anatomical features. Samples were spatially resolved in three dimensions, enabling quantification of the volume and distribution of fungal colonization, western corn rootworm damage, nematode feeding sites, tissue compromised by Fusarium, and as well as root anatomical phenotypes. Owing to its capability for high-throughput sample imaging, LAT serves as an excellent tool to conduct large, quantitative screens to characterize genetic control of root anatomy and interactions with edaphic organisms. Additionally, this technology improves interpretation of root-organism interactions in relatively large, opaque root segments, providing opportunities for novel research investigating the effects of root anatomical phenes on associations with edaphic organisms.
Soil biota have important effects on crop productivity, but can be difficult to study in situ. Laser ablation tomography (LAT) is a novel method that allows for rapid, three-dimensional quantitative and qualitative analysis of root anatomy, providing new opportunities to investigate interactions between roots and edaphic organisms. LAT was used for analysis of maize roots colonized by arbuscular mycorrhizal fungi, maize roots herbivorized by western corn rootworm, barley roots parasitized by cereal cyst nematode, and common bean roots damaged by Fusarium. UV excitation of root tissues affected by edaphic organisms resulted in differential autofluorescence emission, facilitating the classification of tissues and anatomical features. Samples were spatially resolved in three dimensions, enabling quantification of the volume and distribution of fungal colonization, western corn rootworm damage, nematode feeding sites, tissue compromised by Fusarium, and as well as root anatomical phenotypes. Owing to its capability for highthroughput sample imaging, LAT serves as an excellent tool to conduct large, quantitative screens to characterize genetic control of root anatomy and interactions with edaphic organisms. Additionally, this technology improves interpretation of root–organism interactions in relatively large, opaque root segments, providing opportunities for novel research investigating the effects of root anatomical phenes on associations with edaphic organisms.
Soil biota have important effects on crop productivity, but can be difficult to study in situ. Laser ablation tomography (LAT) is a novel method that allows for rapid, three-dimensional quantitative and qualitative analysis of root anatomy, providing new opportunities to investigate interactions between roots and edaphic organisms. LAT was used for analysis of maize roots colonized by arbuscular mycorrhizal fungi, maize roots herbivorized by western corn rootworm, barley roots parasitized by cereal cyst nematode, and common bean roots damaged by Fusarium. UV excitation of root tissues affected by edaphic organisms resulted in differential autofluorescence emission, facilitating the classification of tissues and anatomical features. Samples were spatially resolved in three dimensions, enabling quantification of the volume and distribution of fungal colonization, western corn rootworm damage, nematode feeding sites, tissue compromised by Fusarium, and as well as root anatomical phenotypes. Owing to its capability for high-throughput sample imaging, LAT serves as an excellent tool to conduct large, quantitative screens to characterize genetic control of root anatomy and interactions with edaphic organisms. Additionally, this technology improves interpretation of root-organism interactions in relatively large, opaque root segments, providing opportunities for novel research investigating the effects of root anatomical phenes on associations with edaphic organisms.
Abstract Soil biota have important effects on crop productivity, but can be difficult to study in situ. Laser ablation tomography (LAT) is a novel method that allows for rapid, three-dimensional quantitative and qualitative analysis of root anatomy, providing new opportunities to investigate interactions between roots and edaphic organisms. LAT was used for analysis of maize roots colonized by arbuscular mycorrhizal fungi, maize roots herbivorized by western corn rootworm, barley roots parasitized by cereal cyst nematode, and common bean roots damaged by Fusarium. UV excitation of root tissues affected by edaphic organisms resulted in differential autofluorescence emission, facilitating the classification of tissues and anatomical features. Samples were spatially resolved in three dimensions, enabling quantification of the volume and distribution of fungal colonization, western corn rootworm damage, nematode feeding sites, tissue compromised by Fusarium, and as well as root anatomical phenotypes. Owing to its capability for high-throughput sample imaging, LAT serves as an excellent tool to conduct large, quantitative screens to characterize genetic control of root anatomy and interactions with edaphic organisms. Additionally, this technology improves interpretation of root–organism interactions in relatively large, opaque root segments, providing opportunities for novel research investigating the effects of root anatomical phenes on associations with edaphic organisms. Laser ablation tomography is a novel method for rapid quantitative and qualitative analysis of root anatomy, providing new opportunities to investigate interactions between roots and edaphic organisms.
Soil biota have important effects on crop productivity, but can be difficult to study in situ . Laser ablation tomography (LAT) is a novel method that allows for rapid, three-dimensional quantitative and qualitative analysis of root anatomy, providing new opportunities to investigate interactions between roots and edaphic organisms. LAT was used for analysis of maize roots colonized by arbuscular mycorrhizal fungi, maize roots herbivorized by western corn rootworm, barley roots parasitized by cereal cyst nematode, and common bean roots damaged by Fusarium . UV excitation of root tissues affected by edaphic organisms resulted in differential autofluorescence emission, facilitating the classification of tissues and anatomical features. Samples were spatially resolved in three dimensions, enabling quantification of the volume and distribution of fungal colonization, western corn rootworm damage, nematode feeding sites, tissue compromised by Fusarium , and as well as root anatomical phenotypes. Owing to its capability for high-throughput sample imaging, LAT serves as an excellent tool to conduct large, quantitative screens to characterize genetic control of root anatomy and interactions with edaphic organisms. Additionally, this technology improves interpretation of root–organism interactions in relatively large, opaque root segments, providing opportunities for novel research investigating the effects of root anatomical phenes on associations with edaphic organisms. Laser ablation tomography is a novel method for rapid quantitative and qualitative analysis of root anatomy, providing new opportunities to investigate interactions between roots and edaphic organisms.
Author Van Gansbeke, Bart
Strock, Christopher F.
Guo, Xiangrong
Mather, Diane E.
Roth, Mitchell G.
Schneider, Hannah M.
Galindo-Castañeda, Tania
Brown, Kathleen
Lynch, Jonathan P.
Hall, Benjamin T.
Chilvers, Martin I.
AuthorAffiliation 1 Department of Plant Science, Pennsylvania State University, University Park , PA, USA
3 School of Agriculture, Food and Wine, Waite Research Institute, The University of Adelaide, PMB , Glen Osmond, SA, Australia
5 University of Warwick , UK
2 Lasers for Innovative Solutions, LLC, State College , PA, USA
4 Department of Plant, Soil, and Microbial Sciences, Michigan State University , East Lansing, MI, USA
AuthorAffiliation_xml – name: 4 Department of Plant, Soil, and Microbial Sciences, Michigan State University , East Lansing, MI, USA
– name: 1 Department of Plant Science, Pennsylvania State University, University Park , PA, USA
– name: 2 Lasers for Innovative Solutions, LLC, State College , PA, USA
– name: 3 School of Agriculture, Food and Wine, Waite Research Institute, The University of Adelaide, PMB , Glen Osmond, SA, Australia
– name: 5 University of Warwick , UK
Author_xml – sequence: 1
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  surname: Strock
  fullname: Strock, Christopher F.
– sequence: 2
  givenname: Hannah M.
  surname: Schneider
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– sequence: 3
  givenname: Tania
  surname: Galindo-Castañeda
  fullname: Galindo-Castañeda, Tania
– sequence: 4
  givenname: Benjamin T.
  surname: Hall
  fullname: Hall, Benjamin T.
– sequence: 5
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  surname: Van Gansbeke
  fullname: Van Gansbeke, Bart
– sequence: 6
  givenname: Diane E.
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  fullname: Mather, Diane E.
– sequence: 7
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  surname: Brown
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– sequence: 11
  givenname: Jonathan P.
  surname: Lynch
  fullname: Lynch, Jonathan P.
BackLink https://www.ncbi.nlm.nih.gov/pubmed/31199461$$D View this record in MEDLINE/PubMed
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Copyright The Author(s) 2019
The Author(s) 2019. Published by Oxford University Press on behalf of the Society for Experimental Biology. 2019
The Author(s) 2019. Published by Oxford University Press on behalf of the Society for Experimental Biology.
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Issue 19
Keywords root phenotyping
western corn rootworm
mycorrhizae
Cereal cyst nematode
root anatomy
Fusarium
Language English
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PublicationDate 2019-10-15
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  text: 2019-10-15
  day: 15
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PublicationTitle Journal of experimental botany
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Snippet Soil biota have important effects on crop productivity, but can be difficult to study in situ. Laser ablation tomography (LAT) is a novel method that allows...
Abstract Soil biota have important effects on crop productivity, but can be difficult to study in situ. Laser ablation tomography (LAT) is a novel method that...
Soil biota have important effects on crop productivity, but can be difficult to study in situ . Laser ablation tomography (LAT) is a novel method that allows...
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SubjectTerms barley
beans
cereal cyst nematode
corn
cyst nematodes
Diabrotica virgifera virgifera
Fusarium
mycorrhizae
Nematoda
Plant—Environment Interactions
qualitative analysis
Research Papers
root anatomy
root phenotyping
soil biota
tomography
vesicular arbuscular mycorrhizae
western corn rootworm
Title Laser ablation tomography for visualization of root colonization by edaphic organisms
URI https://www.jstor.org/stable/26962684
https://www.ncbi.nlm.nih.gov/pubmed/31199461
https://www.proquest.com/docview/2306216749
https://www.proquest.com/docview/2986997082
https://www.osti.gov/servlets/purl/1572933
https://pubmed.ncbi.nlm.nih.gov/PMC6793448
Volume 70
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