Multiscale Evolutionary Dynamics of Host-Associated Microbiomes
The composite members of the microbiota face a range of selective pressures and must adapt to persist in the host. We highlight recent work characterizing the evolution and transfer of genetic information across nested scales of host-associated microbiota, which enable resilience to biotic and abiot...
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| Published in | Cell Vol. 172; no. 6; pp. 1216 - 1227 |
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| Main Authors | , , , |
| Format | Journal Article |
| Language | English |
| Published |
United States
Elsevier Inc
08.03.2018
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| Subjects | |
| Online Access | Get full text |
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| Abstract | The composite members of the microbiota face a range of selective pressures and must adapt to persist in the host. We highlight recent work characterizing the evolution and transfer of genetic information across nested scales of host-associated microbiota, which enable resilience to biotic and abiotic perturbations. At the strain level, we consider the preservation and diversification of adaptive information in progeny lineages. At the community level, we consider genetic exchange between distinct microbes in the ecosystem. Finally, we frame microbiomes as open systems subject to acquisition of novel information from foreign ecosystems through invasion by outsider microbes.
This review considers mutations in individual microbes, community gene transfer processes and cross-ecosystem information sharing as distinct influences impacting host-associated microbial adaptation in vivo. |
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| AbstractList | The composite members of the microbiota face a range of selective pressures and must adapt to persist in the host. We highlight recent work characterizing the evolution and transfer of genetic information across nested scales of host-associated microbiota, which enable resilience to biotic and abiotic perturbations. At the strain level, we consider the preservation and diversification of adaptive information in progeny lineages. At the community level, we consider genetic exchange between distinct microbes in the ecosystem. Finally, we frame microbiomes as open systems subject to acquisition of novel information from foreign ecosystems through invasion by outsider microbes. The composite members of the microbiota face a range of selective pressures and must adapt to persist in the host. We highlight recent work characterizing the evolution and transfer of genetic information across nested scales of host-associated microbiota, which enable resilience to biotic and abiotic perturbations. At the strain level, we consider the preservation and diversification of adaptive information in progeny lineages. At the community level, we consider genetic exchange between distinct microbes in the ecosystem. Finally, we frame microbiomes as open systems subject to acquisition of novel information from foreign ecosystems through invasion by outsider microbes. The composite members of the microbiota face a range of selective pressures and must adapt to persist in the host. We highlight recent work characterizing the evolution and transfer of genetic information across nested scales of host-associated microbiota, which enable resilience to biotic and abiotic perturbations. At the strain level, we consider the preservation and diversification of adaptive information in progeny lineages. At the community level, we consider genetic exchange between distinct microbes in the ecosystem. Finally, we frame microbiomes as open systems subject to acquisition of novel information from foreign ecosystems through invasion by outsider microbes.The composite members of the microbiota face a range of selective pressures and must adapt to persist in the host. We highlight recent work characterizing the evolution and transfer of genetic information across nested scales of host-associated microbiota, which enable resilience to biotic and abiotic perturbations. At the strain level, we consider the preservation and diversification of adaptive information in progeny lineages. At the community level, we consider genetic exchange between distinct microbes in the ecosystem. Finally, we frame microbiomes as open systems subject to acquisition of novel information from foreign ecosystems through invasion by outsider microbes. The composite members of the microbiota face a range of selective pressures and must adapt to persist in the host. We highlight recent work characterizing the evolution and transfer of genetic information across nested scales of host-associated microbiota, which enable resilience to biotic and abiotic perturbations. At the strain level, we consider the preservation and diversification of adaptive information in progeny lineages. At the community level, we consider genetic exchange between distinct microbes in the ecosystem. Finally, we frame microbiomes as open systems subject to acquisition of novel information from foreign ecosystems through invasion by outsider microbes. This review considers mutations in individual microbes, community gene transfer processes and cross-ecosystem information sharing as distinct influences impacting host-associated microbial adaptation in vivo. |
| Author | Crook, Nathan Ferreiro, Aura Dantas, Gautam Gasparrini, Andrew J. |
| AuthorAffiliation | 2 Department of Pathology and Immunology, Washington University in St. Louis School of Medicine, Saint Louis, Missouri 63110, USA 3 Department of Molecular Microbiology, Washington University in St. Louis School of Medicine, Saint Louis, Missouri 63110, USA 1 The Edison Family Center for Genome Sciences & Systems Biology, Washington University in St. Louis School of Medicine, Saint Louis, Missouri 63110, USA 4 Department of Biomedical Engineering, Washington University in St. Louis, Saint Louis, Missouri 63130, USA |
| AuthorAffiliation_xml | – name: 3 Department of Molecular Microbiology, Washington University in St. Louis School of Medicine, Saint Louis, Missouri 63110, USA – name: 4 Department of Biomedical Engineering, Washington University in St. Louis, Saint Louis, Missouri 63130, USA – name: 1 The Edison Family Center for Genome Sciences & Systems Biology, Washington University in St. Louis School of Medicine, Saint Louis, Missouri 63110, USA – name: 2 Department of Pathology and Immunology, Washington University in St. Louis School of Medicine, Saint Louis, Missouri 63110, USA |
| Author_xml | – sequence: 1 givenname: Aura surname: Ferreiro fullname: Ferreiro, Aura organization: The Edison Family Center for Genome Sciences & Systems Biology, Washington University School of Medicine, St. Louis, MO 63110, USA – sequence: 2 givenname: Nathan surname: Crook fullname: Crook, Nathan organization: The Edison Family Center for Genome Sciences & Systems Biology, Washington University School of Medicine, St. Louis, MO 63110, USA – sequence: 3 givenname: Andrew J. surname: Gasparrini fullname: Gasparrini, Andrew J. organization: The Edison Family Center for Genome Sciences & Systems Biology, Washington University School of Medicine, St. Louis, MO 63110, USA – sequence: 4 givenname: Gautam surname: Dantas fullname: Dantas, Gautam email: dantas@wustl.edu organization: The Edison Family Center for Genome Sciences & Systems Biology, Washington University School of Medicine, St. Louis, MO 63110, USA |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/29522743$$D View this record in MEDLINE/PubMed |
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| Keywords | pathogen invasion ecology human microbiome microbial transmission colonization xenobiotics microbial evolution genomics horizontal gene transfer clonal interference |
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| Snippet | The composite members of the microbiota face a range of selective pressures and must adapt to persist in the host. We highlight recent work characterizing the... The composite members of the microbiota face a range of selective pressures and must adapt to persist in the host. We highlight recent work characterizing the... The composite members of the microbiota face a range of selective pressures, and must adapt to persist in the host. We highlight recent work characterizing the... |
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| SubjectTerms | Animals clonal interference colonization ecology Ecosystem ecosystems evolution Evolution, Molecular Gene Transfer, Horizontal genetic recombination Genetic Variation genomics horizontal gene transfer Host Specificity host-pathogen relationships human microbiome Humans Metagenome - genetics microbial evolution microbial transmission microbiome Microbiota - genetics microorganisms pathogen invasion progeny xenobiotics |
| Title | Multiscale Evolutionary Dynamics of Host-Associated Microbiomes |
| URI | https://dx.doi.org/10.1016/j.cell.2018.02.015 https://www.ncbi.nlm.nih.gov/pubmed/29522743 https://www.proquest.com/docview/2012921166 https://www.proquest.com/docview/2067243813 https://pubmed.ncbi.nlm.nih.gov/PMC5846202 |
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