Renaming of the genus Flavivirus to Orthoflavivirus and extension of binomial species names within the family Flaviviridae

This review provides a summary of the recently ratified changes to genus and species nomenclature within the virus family Flaviviridae along with reasons for these changes. First, it was considered that the vernacular terms “flaviviral”, “flavivirus”, and “flaviviruses” could under certain circumsta...

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Published in	Archives of virology Vol. 168; no. 9; p. 224
Main Authors	Postler, Thomas S., Beer, Martin, Blitvich, Bradley J., Bukh, Jens, de Lamballerie, Xavier, Drexler, J. Felix, Imrie, Allison, Kapoor, Amit, Karganova, Galina G., Lemey, Philippe, Lohmann, Volker, Simmonds, Peter, Smith, Donald B., Stapleton, Jack T., Kuhn, Jens H.
Format	Journal Article
Language	English
Published	Vienna Springer Vienna 01.09.2023 Springer Nature B.V Springer Verlag
Subjects	Biomedical and Life Sciences Biomedicine family Flaviviridae Flaviviridae - genetics Flavivirus Flavivirus - genetics genus Hepacivirus Infectious Diseases Life Sciences Medical Microbiology Nomenclature species Taxonomic revision taxonomic revisions Taxonomy Terminology as Topic Virology Virology Division News Viruses
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Abstract	This review provides a summary of the recently ratified changes to genus and species nomenclature within the virus family Flaviviridae along with reasons for these changes. First, it was considered that the vernacular terms “flaviviral”, “flavivirus”, and “flaviviruses” could under certain circumstances be ambiguous due to the same word stem “flavi” in the taxon names Flaviviridae and Flavivirus ; these terms could either have referred to all viruses classified in the family Flaviviridae or only to viruses classified in the included genus Flavivirus . To remove this ambiguity, the genus name Flavivirus was changed to Orthoflavivirus by the International Committee on Taxonomy of Viruses (ICTV). Second, all species names in the family were changed to adhere to a newly ICTV-mandated binomial format (e.g., Orthoflavivirus zikaense , Hepacivirus hominis ) similar to nomenclature conventions used for species elsewhere in biology. It is important to note, however, that virus names remain unchanged. Here we outline the revised taxonomy of the family Flaviviridae as approved by the ICTV in April 2023.
AbstractList	This review provides a summary of the recently ratified changes to genus and species nomenclature within the virus family Flaviviridae along with reasons for these changes. First, it was considered that the vernacular terms flaviviral, flavivirus, and flaviviruses could under certain circumstances be ambiguous due to the same word stem flavi in the taxon names Flaviviridae and Flavivirus; these terms could either have referred to all viruses classified in the family Flaviviridae or only to viruses classified in the included genus Flavivirus. To remove this ambiguity, the genus name Flavivirus was changed to Orthoflavivirus by the International Committee on Taxonomy of Viruses (ICTV). Second, all species names in the family were changed to adhere to a newly ICTV-mandated binomial format (e.g., Orthoflavivirus zikaense, Hepacivirus hominis) similar to nomenclature conventions used for species elsewhere in biology. It is important to note, however, that virus names remain unchanged. Here we outline the revised taxonomy of the family Flaviviridae as approved by the ICTV in April 2023. This review provides a summary of the recently ratified changes to genus and species nomenclature within the virus family Flaviviridae along with reasons for these changes. First, it was considered that the vernacular terms “flaviviral”, “flavivirus”, and “flaviviruses” could under certain circumstances be ambiguous due to the same word stem “flavi” in the taxon names Flaviviridae and Flavivirus ; these terms could either have referred to all viruses classified in the family Flaviviridae or only to viruses classified in the included genus Flavivirus . To remove this ambiguity, the genus name Flavivirus was changed to Orthoflavivirus by the International Committee on Taxonomy of Viruses (ICTV). Second, all species names in the family were changed to adhere to a newly ICTV-mandated binomial format (e.g., Orthoflavivirus zikaense , Hepacivirus hominis ) similar to nomenclature conventions used for species elsewhere in biology. It is important to note, however, that virus names remain unchanged. Here we outline the revised taxonomy of the family Flaviviridae as approved by the ICTV in April 2023. This review provides a summary of the recently ratified changes to genus and species nomenclature within the virus family Flaviviridae along with reasons for these changes. First, it was considered that the vernacular terms "flaviviral", "flavivirus", and "flaviviruses" could under certain circumstances be ambiguous due to the same word stem "flavi" in the taxon names Flaviviridae and Flavivirus; these terms could either have referred to all viruses classified in the family Flaviviridae or only to viruses classified in the included genus Flavivirus. To remove this ambiguity, the genus name Flavivirus was changed to Orthoflavivirus by the International Committee on Taxonomy of Viruses (ICTV). Second, all species names in the family were changed to adhere to a newly ICTV-mandated binomial format (e.g., Orthoflavivirus zikaense, Hepacivirus hominis) similar to nomenclature conventions used for species elsewhere in biology. It is important to note, however, that virus names remain unchanged. Here we outline the revised taxonomy of the family Flaviviridae as approved by the ICTV in April 2023.This review provides a summary of the recently ratified changes to genus and species nomenclature within the virus family Flaviviridae along with reasons for these changes. First, it was considered that the vernacular terms "flaviviral", "flavivirus", and "flaviviruses" could under certain circumstances be ambiguous due to the same word stem "flavi" in the taxon names Flaviviridae and Flavivirus; these terms could either have referred to all viruses classified in the family Flaviviridae or only to viruses classified in the included genus Flavivirus. To remove this ambiguity, the genus name Flavivirus was changed to Orthoflavivirus by the International Committee on Taxonomy of Viruses (ICTV). Second, all species names in the family were changed to adhere to a newly ICTV-mandated binomial format (e.g., Orthoflavivirus zikaense, Hepacivirus hominis) similar to nomenclature conventions used for species elsewhere in biology. It is important to note, however, that virus names remain unchanged. Here we outline the revised taxonomy of the family Flaviviridae as approved by the ICTV in April 2023.
ArticleNumber	224
Author	Kapoor, Amit Karganova, Galina G. Blitvich, Bradley J. Lohmann, Volker Smith, Donald B. de Lamballerie, Xavier Postler, Thomas S. Bukh, Jens Lemey, Philippe Simmonds, Peter Beer, Martin Drexler, J. Felix Imrie, Allison Kuhn, Jens H. Stapleton, Jack T.
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Cites_doi	10.1099/jgv.0.001840 10.1007/s00705-021-05323-4 10.1007/s00705-023-05797-4 10.1099/jgv.0.000672 10.1007/s00705-021-05156-1 10.1099/jgv.0.001800
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References	International Committee on Taxonomy of Viruses (ICTV) (2023) Approved proposals. https://ictv.global/files/proposals/approved. Accessed 17 July 2023 International Committee on Taxonomy of Viruses (ICTV) (2023) Virus taxonomy: 2022 Release (MSL #38). https://talk.ictvonline.org/taxonomy/. Accessed 17 July 2023 International Committee on Taxonomy of Viruses (ICTV) (2023) ICTV Code. The International Code of Virus Classification and Nomenclature (ICVCN). March 2021. https://ictv.global/about/code. Accessed 17 July 2023 ZerbiniFMSiddellSGLefkowitzEJMushegianARAdriaenssensEMAlfenas-ZerbiniPDempseyDMDutilhBEGarcíaMLHendricksonRCJunglenSKrupovicMKuhnJHLambertAJŁobockaMOksanenHMOrtonRJRobertsonDLRubinoLSabanadzovicSSimmondsPSmithDBSuzukiNVan DooerslaerKVandammeA-MVarsaniAChanges to virus taxonomy and the ICTV Statutes ratified by the International Committee on Taxonomy of Viruses (2023)Arch Virol20231681751:CAS:528:DC%2BB3sXht1Shtr%2FI10.1007/s00705-023-05797-437296227 SimmondsPBecherPBukhJGouldEAMeyersGMonathTMuerhoffSPletnevARico-HesseRSmithDBStapletonJTICTV Report ConsortiumICTV virus taxonomy profile: FlaviviridaeJ Gen Virol201798231:CAS:528:DC%2BC2sXhsFamtbvI10.1099/jgv.0.000672282185725370391 WalkerPJSiddellSGLefkowitzEJMushegianARAdriaenssensEMAlfenas-ZerbiniPDavisonAJDempseyDMDutilhBEGarcíaMLHarrachBHarrisonRLHendricksonRCJunglenSKnowlesNJKrupovicMKuhnJHLambertAJŁobockaMNibertMLOksanenHMOrtonRJRobertsonDLRubinoLSabanadzovicSSimmondsPSmithDBSuzukiNVan DooerslaerKVandammeAMVarsaniAZerbiniFMChanges to virus taxonomy and to the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2021)Arch Virol2021166263326481:CAS:528:DC%2BB3MXhsV2jt7nN10.1007/s00705-021-05156-134231026 ZerbiniFMSiddellSGMushegianARWalkerPJLefkowitzEJAdriaenssensEMAlfenas-ZerbiniPDutilhBEGarcíaMLJunglenSKrupovicMKuhnJHLambertAJŁobockaMOksanenHMRobertsonDLRubinoLSabanadzovicSSimmondsPSuzukiNVan DoorslaerKVandammeAMVarsaniADifferentiating between viruses and virus species by writing their names correctlyArch Virol2022167123112341:CAS:528:DC%2BB38XhsFSmtbo%3D10.1007/s00705-021-05323-4350432309020231 PostlerTSRubinoLAdriaenssensEMDutilhBEHarrachBJunglenSKropinskiAMKrupovicMWadaJCraneAKuhnJHMushegianARūmnieksJSabanadzovicSSimmondsPVarsaniAZerbiniFMCallananJDraperLAHillCStockdaleSRGuidance for creating individual and batch latinized binomial virus species namesJ Gen Virol20221030018001:CAS:528:DC%2BB38XjtFKqt7zK10.1099/jgv.0.0018003674847910228378 SiddellSGSmithDBAdriaenssensEAlfenas-ZerbiniPDutilhBEGarciaMLJunglenSKrupovicMKuhnJHLambertAJLefkowitzEJŁobockaMMushegianAROksanenHMRobertsonDLRubinoLSabanadzovicSSimmondsPSuzukiNVan DoorslaerKVandammeAMVarsaniAZerbiniFMVirus taxonomy and the role of the International Committee on Taxonomy of Viruses (ICTV)J Gen Virol20231040018401:CAS:528:DC%2BB3sXhtFemsL3J10.1099/jgv.0.0018403714110610227694 5835_CR2 5835_CR1 SG Siddell (5835_CR5) 2023; 104 5835_CR3 PJ Walker (5835_CR7) 2021; 166 FM Zerbini (5835_CR8) 2022; 167 TS Postler (5835_CR4) 2022; 103 P Simmonds (5835_CR6) 2017; 98 FM Zerbini (5835_CR9) 2023; 168
References_xml	– reference: International Committee on Taxonomy of Viruses (ICTV) (2023) Approved proposals. https://ictv.global/files/proposals/approved. Accessed 17 July 2023 – reference: ZerbiniFMSiddellSGLefkowitzEJMushegianARAdriaenssensEMAlfenas-ZerbiniPDempseyDMDutilhBEGarcíaMLHendricksonRCJunglenSKrupovicMKuhnJHLambertAJŁobockaMOksanenHMOrtonRJRobertsonDLRubinoLSabanadzovicSSimmondsPSmithDBSuzukiNVan DooerslaerKVandammeA-MVarsaniAChanges to virus taxonomy and the ICTV Statutes ratified by the International Committee on Taxonomy of Viruses (2023)Arch Virol20231681751:CAS:528:DC%2BB3sXht1Shtr%2FI10.1007/s00705-023-05797-437296227 – reference: SiddellSGSmithDBAdriaenssensEAlfenas-ZerbiniPDutilhBEGarciaMLJunglenSKrupovicMKuhnJHLambertAJLefkowitzEJŁobockaMMushegianAROksanenHMRobertsonDLRubinoLSabanadzovicSSimmondsPSuzukiNVan DoorslaerKVandammeAMVarsaniAZerbiniFMVirus taxonomy and the role of the International Committee on Taxonomy of Viruses (ICTV)J Gen Virol20231040018401:CAS:528:DC%2BB3sXhtFemsL3J10.1099/jgv.0.0018403714110610227694 – reference: WalkerPJSiddellSGLefkowitzEJMushegianARAdriaenssensEMAlfenas-ZerbiniPDavisonAJDempseyDMDutilhBEGarcíaMLHarrachBHarrisonRLHendricksonRCJunglenSKnowlesNJKrupovicMKuhnJHLambertAJŁobockaMNibertMLOksanenHMOrtonRJRobertsonDLRubinoLSabanadzovicSSimmondsPSmithDBSuzukiNVan DooerslaerKVandammeAMVarsaniAZerbiniFMChanges to virus taxonomy and to the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2021)Arch Virol2021166263326481:CAS:528:DC%2BB3MXhsV2jt7nN10.1007/s00705-021-05156-134231026 – reference: International Committee on Taxonomy of Viruses (ICTV) (2023) ICTV Code. The International Code of Virus Classification and Nomenclature (ICVCN). March 2021. https://ictv.global/about/code. Accessed 17 July 2023 – reference: ZerbiniFMSiddellSGMushegianARWalkerPJLefkowitzEJAdriaenssensEMAlfenas-ZerbiniPDutilhBEGarcíaMLJunglenSKrupovicMKuhnJHLambertAJŁobockaMOksanenHMRobertsonDLRubinoLSabanadzovicSSimmondsPSuzukiNVan DoorslaerKVandammeAMVarsaniADifferentiating between viruses and virus species by writing their names correctlyArch Virol2022167123112341:CAS:528:DC%2BB38XhsFSmtbo%3D10.1007/s00705-021-05323-4350432309020231 – reference: SimmondsPBecherPBukhJGouldEAMeyersGMonathTMuerhoffSPletnevARico-HesseRSmithDBStapletonJTICTV Report ConsortiumICTV virus taxonomy profile: FlaviviridaeJ Gen Virol201798231:CAS:528:DC%2BC2sXhsFamtbvI10.1099/jgv.0.000672282185725370391 – reference: International Committee on Taxonomy of Viruses (ICTV) (2023) Virus taxonomy: 2022 Release (MSL #38). https://talk.ictvonline.org/taxonomy/. Accessed 17 July 2023 – reference: PostlerTSRubinoLAdriaenssensEMDutilhBEHarrachBJunglenSKropinskiAMKrupovicMWadaJCraneAKuhnJHMushegianARūmnieksJSabanadzovicSSimmondsPVarsaniAZerbiniFMCallananJDraperLAHillCStockdaleSRGuidance for creating individual and batch latinized binomial virus species namesJ Gen Virol20221030018001:CAS:528:DC%2BB38XjtFKqt7zK10.1099/jgv.0.0018003674847910228378 – ident: 5835_CR2 – volume: 104 start-page: 001840 year: 2023 ident: 5835_CR5 publication-title: J Gen Virol doi: 10.1099/jgv.0.001840 – volume: 167 start-page: 1231 year: 2022 ident: 5835_CR8 publication-title: Arch Virol doi: 10.1007/s00705-021-05323-4 – ident: 5835_CR1 – ident: 5835_CR3 – volume: 168 start-page: 175 year: 2023 ident: 5835_CR9 publication-title: Arch Virol doi: 10.1007/s00705-023-05797-4 – volume: 98 start-page: 2 year: 2017 ident: 5835_CR6 publication-title: J Gen Virol doi: 10.1099/jgv.0.000672 – volume: 166 start-page: 2633 year: 2021 ident: 5835_CR7 publication-title: Arch Virol doi: 10.1007/s00705-021-05156-1 – volume: 103 start-page: 001800 year: 2022 ident: 5835_CR4 publication-title: J Gen Virol doi: 10.1099/jgv.0.001800
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Snippet	This review provides a summary of the recently ratified changes to genus and species nomenclature within the virus family Flaviviridae along with reasons for... This review provides a summary of the recently ratified changes to genus and species nomenclature within the virus family Flaviviridae along with reasons for...
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SubjectTerms	Biomedical and Life Sciences Biomedicine family Flaviviridae Flaviviridae - genetics Flavivirus Flavivirus - genetics genus Hepacivirus Infectious Diseases Life Sciences Medical Microbiology Nomenclature species Taxonomic revision taxonomic revisions Taxonomy Terminology as Topic Virology Virology Division News Viruses
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Title	Renaming of the genus Flavivirus to Orthoflavivirus and extension of binomial species names within the family Flaviviridae
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