Molecular Diversity in Puccinia triticina Isolates from Ethiopia and Germany
A total of 43 isolates of the wheat leaf rust fungus, Puccinia triticina Eriks, collected from Ethiopia and Germany were analysed for their genetic diversity using the amplified fragment length polymorphism (AFLP) technique. Out of 18 EcoRI/MseI primer combinations screened, 15 produced 219 highly p...
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| Published in | Journal of phytopathology Vol. 154; no. 11-12; pp. 701 - 710 |
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| Main Authors | , , , |
| Format | Journal Article |
| Language | English |
| Published |
Oxford, UK
Oxford, UK : Blackwell Publishing Ltd
01.12.2006
Blackwell Publishing Ltd Blackwell |
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| Online Access | Get full text |
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| Abstract | A total of 43 isolates of the wheat leaf rust fungus, Puccinia triticina Eriks, collected from Ethiopia and Germany were analysed for their genetic diversity using the amplified fragment length polymorphism (AFLP) technique. Out of 18 EcoRI/MseI primer combinations screened, 15 produced 219 highly polymorphic fragments. The average AFLP difference between pairs of the leaf rust isolates (26 from Ethiopia, 17 from Germany) was calculated using Dice's genetic similarity (GS) coefficient. The overall GS for the 43 isolates was 0.67 ± 0.13. The Ethiopian leaf rust isolates had lower average GS (0.63 ± 0.13) than the German ones (0.76 ± 0.10). A cluster analysis and a two-dimensional principal coordinate analysis (PCoA) grouped the 43 isolates into two significantly different (P <= 0.01) clusters. Isolates in cluster I (35 isolates) had an average GS of 0.76 ± 0.06 while the isolates in cluster II (8 isolates) had an average GS of 0.55 ± 0.12. Isolates were also grouped into three regions of collection, central Ethiopia, south and south-east Ethiopia, and Germany. The regions were significantly different at P <= 0.01 indicating regional variation in terms of molecular diversity of the leaf rust isolates studied. Each isolate, however, had a unique AFLP fingerprint. The results indicated that the leaf rust population in central Ethiopia is genetically distinct and this might be related to the predominant cultivation of durum wheat cultivars in this area. |
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| AbstractList | A total of 43 isolates of the wheat leaf rust fungus, Puccinia triticina Eriks, collected from Ethiopia and Germany were analysed for their genetic diversity using the amplified fragment length polymorphism (AFLP) technique. Out of 18 EcoRI/MseI primer combinations screened, 15 produced 219 highly polymorphic fragments. The average AFLP difference between pairs of the leaf rust isolates (26 from Ethiopia, 17 from Germany) was calculated using Dice's genetic similarity (GS) coefficient. The overall GS for the 43 isolates was 0.67 plus or minus 0.13. The Ethiopian leaf rust isolates had lower average GS (0.63 plus or minus 0.13) than the German ones (0.76 plus or minus 0.10). A cluster analysis and a two-dimensional principal coordinate analysis (PCoA) grouped the 43 isolates into two significantly different (P less than or equal to 0.01) clusters. Isolates in cluster I (35 isolates) had an average GS of 0.76 plus or minus 0.06 while the isolates in cluster II (8 isolates) had an average GS of 0.55 plus or minus 0.12. Isolates were also grouped into three regions of collection, central Ethiopia, south and south-east Ethiopia, and Germany. The regions were significantly different at P less than or equal to 0.01 indicating regional variation in terms of molecular diversity of the leaf rust isolates studied. Each isolate, however, had a unique AFLP fingerprint. The results indicated that the leaf rust population in central Ethiopia is genetically distinct and this might be related to the predominant cultivation of durum wheat cultivars in this area. A total of 43 isolates of the wheat leaf rust fungus, Puccinia triticina Eriks, collected from Ethiopia and Germany were analysed for their genetic diversity using the amplified fragment length polymorphism (AFLP) technique. Out of 18 EcoRI/MseI primer combinations screened, 15 produced 219 highly polymorphic fragments. The average AFLP difference between pairs of the leaf rust isolates (26 from Ethiopia, 17 from Germany) was calculated using Dice's genetic similarity (GS) coefficient. The overall GS for the 43 isolates was 0.67 ± 0.13. The Ethiopian leaf rust isolates had lower average GS (0.63 ± 0.13) than the German ones (0.76 ± 0.10). A cluster analysis and a two‐dimensional principal coordinate analysis (PCoA) grouped the 43 isolates into two significantly different (P ≤ 0.01) clusters. Isolates in cluster I (35 isolates) had an average GS of 0.76 ± 0.06 while the isolates in cluster II (8 isolates) had an average GS of 0.55 ± 0.12. Isolates were also grouped into three regions of collection, central Ethiopia, south and south‐east Ethiopia, and Germany. The regions were significantly different at P ≤ 0.01 indicating regional variation in terms of molecular diversity of the leaf rust isolates studied. Each isolate, however, had a unique AFLP fingerprint. The results indicated that the leaf rust population in central Ethiopia is genetically distinct and this might be related to the predominant cultivation of durum wheat cultivars in this area. Abstract A total of 43 isolates of the wheat leaf rust fungus, Puccinia triticina Eriks, collected from Ethiopia and Germany were analysed for their genetic diversity using the amplified fragment length polymorphism (AFLP) technique. Out of 18 Eco RI/ Mse I primer combinations screened, 15 produced 219 highly polymorphic fragments. The average AFLP difference between pairs of the leaf rust isolates (26 from Ethiopia, 17 from Germany) was calculated using Dice's genetic similarity (GS) coefficient. The overall GS for the 43 isolates was 0.67 ± 0.13. The Ethiopian leaf rust isolates had lower average GS (0.63 ± 0.13) than the German ones (0.76 ± 0.10). A cluster analysis and a two‐dimensional principal coordinate analysis (PCoA) grouped the 43 isolates into two significantly different (P ≤ 0.01) clusters. Isolates in cluster I (35 isolates) had an average GS of 0.76 ± 0.06 while the isolates in cluster II (8 isolates) had an average GS of 0.55 ± 0.12. Isolates were also grouped into three regions of collection, central Ethiopia, south and south‐east Ethiopia, and Germany. The regions were significantly different at P ≤ 0.01 indicating regional variation in terms of molecular diversity of the leaf rust isolates studied. Each isolate, however, had a unique AFLP fingerprint. The results indicated that the leaf rust population in central Ethiopia is genetically distinct and this might be related to the predominant cultivation of durum wheat cultivars in this area. A total of 43 isolates of the wheat leaf rust fungus, Puccinia triticina Eriks, collected from Ethiopia and Germany were analysed for their genetic diversity using the amplified fragment length polymorphism (AFLP) technique. Out of 18 EcoRI/MseI primer combinations screened, 15 produced 219 highly polymorphic fragments. The average AFLP difference between pairs of the leaf rust isolates (26 from Ethiopia, 17 from Germany) was calculated using Dice's genetic similarity (GS) coefficient. The overall GS for the 43 isolates was 0.67 ± 0.13. The Ethiopian leaf rust isolates had lower average GS (0.63 ± 0.13) than the German ones (0.76 ± 0.10). A cluster analysis and a two-dimensional principal coordinate analysis (PCoA) grouped the 43 isolates into two significantly different (P <= 0.01) clusters. Isolates in cluster I (35 isolates) had an average GS of 0.76 ± 0.06 while the isolates in cluster II (8 isolates) had an average GS of 0.55 ± 0.12. Isolates were also grouped into three regions of collection, central Ethiopia, south and south-east Ethiopia, and Germany. The regions were significantly different at P <= 0.01 indicating regional variation in terms of molecular diversity of the leaf rust isolates studied. Each isolate, however, had a unique AFLP fingerprint. The results indicated that the leaf rust population in central Ethiopia is genetically distinct and this might be related to the predominant cultivation of durum wheat cultivars in this area. |
| Author | Pillen, K. Oerke, E. C. Mebrate, S. A. Dehne, H. W. |
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| Keywords | Monocotyledones Plant pathology Triticum durum Microbiology Plant pathogen Basidiomycetes Puccinia triticina Puccinia tritici-duri Cereal crop Fungi Gramineae Angiospermae Genetics wheat leaf rust Thallophyta Puccinia recondita f. tritici Genetic diversity Fingerprint method AFLP Isolate Spermatophyta Amplified fragment length polymorphism marker Triticum aestivum Cultivar |
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| Snippet | A total of 43 isolates of the wheat leaf rust fungus, Puccinia triticina Eriks, collected from Ethiopia and Germany were analysed for their genetic diversity... Abstract A total of 43 isolates of the wheat leaf rust fungus, Puccinia triticina Eriks, collected from Ethiopia and Germany were analysed for their genetic... |
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| SubjectTerms | AFLP amplified fragment length polymorphism Biological and medical sciences Fundamental and applied biological sciences. Psychology Fungal plant pathogens genetic distance genetic polymorphism genetic similarity genetic variation leaf rust Phytopathology. Animal pests. Plant and forest protection plant pathogenic fungi provenance Puccinia recondita Puccinia tritici-duri Puccinia triticina rust diseases strain differences strains Triticum aestivum wheat |
| Title | Molecular Diversity in Puccinia triticina Isolates from Ethiopia and Germany |
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