Single-cell analysis of innate spinal cord regeneration identifies intersecting modes of neuronal repair

Adult zebrafish have an innate ability to recover from severe spinal cord injury. Here, we report a comprehensive single nuclear RNA sequencing atlas that spans 6 weeks of regeneration. We identify cooperative roles for adult neurogenesis and neuronal plasticity during spinal cord repair. Neurogenes...

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Published inNature communications Vol. 15; no. 1; pp. 6808 - 21
Main Authors Saraswathy, Vishnu Muraleedharan, Zhou, Lili, Mokalled, Mayssa H.
Format Journal Article
LanguageEnglish
Published London Nature Publishing Group UK 15.08.2024
Nature Publishing Group
Nature Portfolio
Subjects
14/1
14/19
14/32
38/62
38/91
42/41
49/39
631/378/1687/1825
631/378/340
631/378/87
64/116
Animals
Animals, Genetically Modified
CRISPR
CRISPR-Cas Systems
Danio rerio
Disease Models, Animal
Functional plasticity
GABAergic Neurons - metabolism
Gene expression
Gene sequencing
Glutamatergic transmission
Humanities and Social Sciences
Injury analysis
multidisciplinary
Mutagenesis
Nerve Regeneration - physiology
Neurogenesis
Neurogenesis - genetics
Neuronal Plasticity - physiology
Neurons
Neurons - metabolism
Neurons - physiology
Neuroplasticity
Recovery of Function
Regeneration
Science
Science (multidisciplinary)
Single-Cell Analysis
Spinal Cord - metabolism
Spinal cord injuries
Spinal Cord Injuries - metabolism
Spinal Cord Regeneration
Spinal plasticity
Zebrafish
γ-Aminobutyric acid
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Abstract Adult zebrafish have an innate ability to recover from severe spinal cord injury. Here, we report a comprehensive single nuclear RNA sequencing atlas that spans 6 weeks of regeneration. We identify cooperative roles for adult neurogenesis and neuronal plasticity during spinal cord repair. Neurogenesis of glutamatergic and GABAergic neurons restores the excitatory/inhibitory balance after injury. In addition, a transient population of injury-responsive neurons (iNeurons) show elevated plasticity 1 week post-injury. We found iNeurons are injury-surviving neurons that acquire a neuroblast-like gene expression signature after injury. CRISPR/Cas9 mutagenesis showed iNeurons are required for functional recovery and employ vesicular trafficking as an essential mechanism that underlies neuronal plasticity. This study provides a comprehensive resource of the cells and mechanisms that direct spinal cord regeneration and establishes zebrafish as a model of plasticity-driven neural repair. The roadmap to promote neural repair after spinal cord injury remains elusive. Here, longitudinal single-cell sequencing in adult zebrafish identifies intersecting modes of neuronal plasticity and neurogenesis during innate neural repair.
AbstractList Adult zebrafish have an innate ability to recover from severe spinal cord injury. Here, we report a comprehensive single nuclear RNA sequencing atlas that spans 6 weeks of regeneration. We identify cooperative roles for adult neurogenesis and neuronal plasticity during spinal cord repair. Neurogenesis of glutamatergic and GABAergic neurons restores the excitatory/inhibitory balance after injury. In addition, a transient population of injury-responsive neurons (iNeurons) show elevated plasticity 1 week post-injury. We found iNeurons are injury-surviving neurons that acquire a neuroblast-like gene expression signature after injury. CRISPR/Cas9 mutagenesis showed iNeurons are required for functional recovery and employ vesicular trafficking as an essential mechanism that underlies neuronal plasticity. This study provides a comprehensive resource of the cells and mechanisms that direct spinal cord regeneration and establishes zebrafish as a model of plasticity-driven neural repair.Adult zebrafish have an innate ability to recover from severe spinal cord injury. Here, we report a comprehensive single nuclear RNA sequencing atlas that spans 6 weeks of regeneration. We identify cooperative roles for adult neurogenesis and neuronal plasticity during spinal cord repair. Neurogenesis of glutamatergic and GABAergic neurons restores the excitatory/inhibitory balance after injury. In addition, a transient population of injury-responsive neurons (iNeurons) show elevated plasticity 1 week post-injury. We found iNeurons are injury-surviving neurons that acquire a neuroblast-like gene expression signature after injury. CRISPR/Cas9 mutagenesis showed iNeurons are required for functional recovery and employ vesicular trafficking as an essential mechanism that underlies neuronal plasticity. This study provides a comprehensive resource of the cells and mechanisms that direct spinal cord regeneration and establishes zebrafish as a model of plasticity-driven neural repair.
Adult zebrafish have an innate ability to recover from severe spinal cord injury. Here, we report a comprehensive single nuclear RNA sequencing atlas that spans 6 weeks of regeneration. We identify cooperative roles for adult neurogenesis and neuronal plasticity during spinal cord repair. Neurogenesis of glutamatergic and GABAergic neurons restores the excitatory/inhibitory balance after injury. In addition, a transient population of injury-responsive neurons (iNeurons) show elevated plasticity 1 week post-injury. We found iNeurons are injury-surviving neurons that acquire a neuroblast-like gene expression signature after injury. CRISPR/Cas9 mutagenesis showed iNeurons are required for functional recovery and employ vesicular trafficking as an essential mechanism that underlies neuronal plasticity. This study provides a comprehensive resource of the cells and mechanisms that direct spinal cord regeneration and establishes zebrafish as a model of plasticity-driven neural repair.
Adult zebrafish have an innate ability to recover from severe spinal cord injury. Here, we report a comprehensive single nuclear RNA sequencing atlas that spans 6 weeks of regeneration. We identify cooperative roles for adult neurogenesis and neuronal plasticity during spinal cord repair. Neurogenesis of glutamatergic and GABAergic neurons restores the excitatory/inhibitory balance after injury. In addition, a transient population of injury-responsive neurons (iNeurons) show elevated plasticity 1 week post-injury. We found iNeurons are injury-surviving neurons that acquire a neuroblast-like gene expression signature after injury. CRISPR/Cas9 mutagenesis showed iNeurons are required for functional recovery and employ vesicular trafficking as an essential mechanism that underlies neuronal plasticity. This study provides a comprehensive resource of the cells and mechanisms that direct spinal cord regeneration and establishes zebrafish as a model of plasticity-driven neural repair. The roadmap to promote neural repair after spinal cord injury remains elusive. Here, longitudinal single-cell sequencing in adult zebrafish identifies intersecting modes of neuronal plasticity and neurogenesis during innate neural repair.
Adult zebrafish have an innate ability to recover from severe spinal cord injury. Here, we report a comprehensive single nuclear RNA sequencing atlas that spans 6 weeks of regeneration. We identify cooperative roles for adult neurogenesis and neuronal plasticity during spinal cord repair. Neurogenesis of glutamatergic and GABAergic neurons restores the excitatory/inhibitory balance after injury. In addition, a transient population of injury-responsive neurons (iNeurons) show elevated plasticity 1 week post-injury. We found iNeurons are injury-surviving neurons that acquire a neuroblast-like gene expression signature after injury. CRISPR/Cas9 mutagenesis showed iNeurons are required for functional recovery and employ vesicular trafficking as an essential mechanism that underlies neuronal plasticity. This study provides a comprehensive resource of the cells and mechanisms that direct spinal cord regeneration and establishes zebrafish as a model of plasticity-driven neural repair.The roadmap to promote neural repair after spinal cord injury remains elusive. Here, longitudinal single-cell sequencing in adult zebrafish identifies intersecting modes of neuronal plasticity and neurogenesis during innate neural repair.
Abstract Adult zebrafish have an innate ability to recover from severe spinal cord injury. Here, we report a comprehensive single nuclear RNA sequencing atlas that spans 6 weeks of regeneration. We identify cooperative roles for adult neurogenesis and neuronal plasticity during spinal cord repair. Neurogenesis of glutamatergic and GABAergic neurons restores the excitatory/inhibitory balance after injury. In addition, a transient population of injury-responsive neurons (iNeurons) show elevated plasticity 1 week post-injury. We found iNeurons are injury-surviving neurons that acquire a neuroblast-like gene expression signature after injury. CRISPR/Cas9 mutagenesis showed iNeurons are required for functional recovery and employ vesicular trafficking as an essential mechanism that underlies neuronal plasticity. This study provides a comprehensive resource of the cells and mechanisms that direct spinal cord regeneration and establishes zebrafish as a model of plasticity-driven neural repair.
ArticleNumber 6808
Author Zhou, Lili
Saraswathy, Vishnu Muraleedharan
Mokalled, Mayssa H.
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  organization: Department of Developmental Biology, Washington University School of Medicine, Center of Regenerative Medicine, Washington University School of Medicine, Hope Center for Neurological Disorders, Washington University School of Medicine
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crossref_primary_10_3390_biology14030272
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SSID ssj0000391844
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Snippet Adult zebrafish have an innate ability to recover from severe spinal cord injury. Here, we report a comprehensive single nuclear RNA sequencing atlas that...
Abstract Adult zebrafish have an innate ability to recover from severe spinal cord injury. Here, we report a comprehensive single nuclear RNA sequencing atlas...
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38/62
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42/41
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631/378/1687/1825
631/378/340
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Animals
Animals, Genetically Modified
CRISPR
CRISPR-Cas Systems
Danio rerio
Disease Models, Animal
Functional plasticity
GABAergic Neurons - metabolism
Gene expression
Gene sequencing
Glutamatergic transmission
Humanities and Social Sciences
Injury analysis
multidisciplinary
Mutagenesis
Nerve Regeneration - physiology
Neurogenesis
Neurogenesis - genetics
Neuronal Plasticity - physiology
Neurons
Neurons - metabolism
Neurons - physiology
Neuroplasticity
Recovery of Function
Regeneration
Science
Science (multidisciplinary)
Single-Cell Analysis
Spinal Cord - metabolism
Spinal cord injuries
Spinal Cord Injuries - metabolism
Spinal Cord Regeneration
Spinal plasticity
Zebrafish
γ-Aminobutyric acid
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Title Single-cell analysis of innate spinal cord regeneration identifies intersecting modes of neuronal repair
URI https://link.springer.com/article/10.1038/s41467-024-50628-y
https://www.ncbi.nlm.nih.gov/pubmed/39147780
https://www.proquest.com/docview/3093303230
https://www.proquest.com/docview/3093594796
https://doaj.org/article/30ab23c2e826414fa40dd1efc4a77a16
Volume 15
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