Genetic Approaches Refine Ex Situ Lowland Tapir (Tapirus terrestris) Conservation
Ex situ conservation management remains an important tool in the face of continued habitat loss and global environmental change. Here, we use microsatellite marker variation to evaluate conventional assumptions of pedigree-based ex situ population management and directly inform a captive lowland tap...
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Published in | The Journal of heredity Vol. 101; no. 5; pp. 581 - 590 |
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Main Authors | , , , , |
Format | Journal Article |
Language | English |
Published |
United States
The American Genetic Association
01.09.2010
Oxford University Press Oxford Publishing Limited (England) |
Subjects | |
Online Access | Get full text |
ISSN | 0022-1503 1465-7333 1465-7333 |
DOI | 10.1093/jhered/esq055 |
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Abstract | Ex situ conservation management remains an important tool in the face of continued habitat loss and global environmental change. Here, we use microsatellite marker variation to evaluate conventional assumptions of pedigree-based ex situ population management and directly inform a captive lowland tapir breeding program within a range country. We found relatively high levels of genetic variation (Ntotal = 41; mean HE = 0.67 across 10 variable loci) and little evidence for relatedness among founder individuals (Nfounders = 10; mean relatedness = -0.05). Seven of 29 putative parent-offspring relationships were excluded by parentage analysis based on allele sharing, and we identified 2 individuals of high genetic value to the population (mk [less-than or equal to] 0.007) that would otherwise have been excluded from the breeding program. Traditional assumptions of founders being unrelated and individuals of unknown origin being highly related led to overestimates of mean kinship and inbreeding, and underestimates of gene diversity, when compared with values found when genetic markers were used to inform kinship. We discuss our results within the context of recent studies that have assessed the utility of neutral molecular markers for ex situ conservation. |
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AbstractList | Ex situ conservation management remains an important tool in the face of continued habitat loss and global environmental change. Here, we use microsatellite marker variation to evaluate conventional assumptions of pedigree-based ex situ population management and directly inform a captive lowland tapir breeding program within a range country. We found relatively high levels of genetic variation (N sub(total) = 41; mean H sub(E) = 0.67 across 10 variable loci) and little evidence for relatedness among founder individuals (N sub(founders) = 10; mean relatedness = -0.05). Seven of 29 putative parent-offspring relationships were excluded by parentage analysis based on allele sharing, and we identified 2 individuals of high genetic value to the population (mk , 0.007) that would otherwise have been excluded from the breeding program. Traditional assumptions of founders being unrelated and individuals of unknown origin being highly related led to overestimates of mean kinship and inbreeding, and underestimates of gene diversity, when compared with values found when genetic markers were used to inform kinship. We discuss our results within the context of recent studies that have assessed the utility of neutral molecular markers for ex situ conservation. Ex situ conservation management remains an important tool in the face of continued habitat loss and global environmental change. Here, we use microsatellite market variation to evaluate conventional assumptions of pedigree-based ex situ population management and directly inform a captive lowland tapir breeding program within a range country. We found relatively high levels of genetic variation (N^ subtotal^ = 41; mean H^ subE^ = 0.67 across 10 variable loci) and little evidence for relatedness among founder individuals (N^ subfounders^ = 10; mean relatedness = -0.05). Seven of 29 putative parent-offspring relationships were excluded by parentage analysis based on allele sharing, and we identified 2 individuals of high genetic value to the population (mk ≤ 0.007) that would otherwise have been excluded from the breeding program. Traditional assumptions of founders being unrelated and individuals of unknown origin being highly related led to overestimates of mean kinship and inbreeding, and underestimates of gene diversity, when compared with values found when genetic markers were used to inform kinship. We discuss our results within the context of recent studies that have assessed the utility of neutral molecular markers for ex situ conservation. [PUBLICATION ABSTRACT] Ex situ conservation management remains an important tool in the face of continued habitat loss and global environmental change. Here, we use microsatellite marker variation to evaluate conventional assumptions of pedigree-based ex situ population management and directly inform a captive lowland tapir breeding program within a range country. We found relatively high levels of genetic variation (Ntotal = 41; mean HE = 0.67 across 10 variable loci) and little evidence for relatedness among founder individuals (Nfounders = 10; mean relatedness = −0.05). Seven of 29 putative parent–offspring relationships were excluded by parentage analysis based on allele sharing, and we identified 2 individuals of high genetic value to the population (mk ≤ 0.007) that would otherwise have been excluded from the breeding program. Traditional assumptions of founders being unrelated and individuals of unknown origin being highly related led to overestimates of mean kinship and inbreeding, and underestimates of gene diversity, when compared with values found when genetic markers were used to inform kinship. We discuss our results within the context of recent studies that have assessed the utility of neutral molecular markers for ex situ conservation. Ex situ conservation management remains an important tool in the face of continued habitat loss and global environmental change. Here, we use microsatellite marker variation to evaluate conventional assumptions of pedigree-based ex situ population management and directly inform a captive lowland tapir breeding program within a range country. We found relatively high levels of genetic variation (Ntotal = 41; mean HE = 0.67 across 10 variable loci) and little evidence for relatedness among founder individuals (Nfounders = 10; mean relatedness = -0.05). Seven of 29 putative parent-offspring relationships were excluded by parentage analysis based on allele sharing, and we identified 2 individuals of high genetic value to the population (mk [less-than or equal to] 0.007) that would otherwise have been excluded from the breeding program. Traditional assumptions of founders being unrelated and individuals of unknown origin being highly related led to overestimates of mean kinship and inbreeding, and underestimates of gene diversity, when compared with values found when genetic markers were used to inform kinship. We discuss our results within the context of recent studies that have assessed the utility of neutral molecular markers for ex situ conservation. Ex situ conservation management remains an important tool in the face of continued habitat loss and global environmental change. Here, we use microsatellite marker variation to evaluate conventional assumptions of pedigree-based ex situ population management and directly inform a captive lowland tapir breeding program within a range country. We found relatively high levels of genetic variation (N(total) = 41; mean H(E) = 0.67 across 10 variable loci) and little evidence for relatedness among founder individuals (N(founders) = 10; mean relatedness = -0.05). Seven of 29 putative parent-offspring relationships were excluded by parentage analysis based on allele sharing, and we identified 2 individuals of high genetic value to the population (mk <or= 0.007) that would otherwise have been excluded from the breeding program. Traditional assumptions of founders being unrelated and individuals of unknown origin being highly related led to overestimates of mean kinship and inbreeding, and underestimates of gene diversity, when compared with values found when genetic markers were used to inform kinship. We discuss our results within the context of recent studies that have assessed the utility of neutral molecular markers for ex situ conservation. Ex situ conservation management remains an important tool in the face of continued habitat loss and global environmental change. Here, we use microsatellite marker variation to evaluate conventional assumptions of pedigree-based ex situ population management and directly inform a captive lowland tapir breeding program within a range country. We found relatively high levels of genetic variation (N(total) = 41; mean H(E) = 0.67 across 10 variable loci) and little evidence for relatedness among founder individuals (N(founders) = 10; mean relatedness = -0.05). Seven of 29 putative parent-offspring relationships were excluded by parentage analysis based on allele sharing, and we identified 2 individuals of high genetic value to the population (mk <or= 0.007) that would otherwise have been excluded from the breeding program. Traditional assumptions of founders being unrelated and individuals of unknown origin being highly related led to overestimates of mean kinship and inbreeding, and underestimates of gene diversity, when compared with values found when genetic markers were used to inform kinship. We discuss our results within the context of recent studies that have assessed the utility of neutral molecular markers for ex situ conservation.Ex situ conservation management remains an important tool in the face of continued habitat loss and global environmental change. Here, we use microsatellite marker variation to evaluate conventional assumptions of pedigree-based ex situ population management and directly inform a captive lowland tapir breeding program within a range country. We found relatively high levels of genetic variation (N(total) = 41; mean H(E) = 0.67 across 10 variable loci) and little evidence for relatedness among founder individuals (N(founders) = 10; mean relatedness = -0.05). Seven of 29 putative parent-offspring relationships were excluded by parentage analysis based on allele sharing, and we identified 2 individuals of high genetic value to the population (mk <or= 0.007) that would otherwise have been excluded from the breeding program. Traditional assumptions of founders being unrelated and individuals of unknown origin being highly related led to overestimates of mean kinship and inbreeding, and underestimates of gene diversity, when compared with values found when genetic markers were used to inform kinship. We discuss our results within the context of recent studies that have assessed the utility of neutral molecular markers for ex situ conservation. |
Author | Lalonde, Danielle R Gonçalves da Silva, Anders Shoemaker, Alan Quse, Viviana Russello, Michael A |
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BackLink | https://www.ncbi.nlm.nih.gov/pubmed/20484384$$D View this record in MEDLINE/PubMed |
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Snippet | Ex situ conservation management remains an important tool in the face of continued habitat loss and global environmental change. Here, we use microsatellite... |
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SubjectTerms | alleles Animal populations Animals Animals, Zoo Animals, Zoo - genetics Breeding Breeding - methods Conservation of Natural Resources Conservation of Natural Resources - methods Environmental changes Female Genetic diversity Genetic markers Genetic Variation genetics global change habitat destruction Habitat loss Habitats Inbreeding kinship loci Male mean kinship methods Microsatellite Repeats Offspring parentage Pedigree Perissodactyla Perissodactyla - genetics relatedness Satellite DNA Tapirus Tapirus terrestris Wildlife zoos |
Title | Genetic Approaches Refine Ex Situ Lowland Tapir (Tapirus terrestris) Conservation |
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