Genome-Wide Transcriptomic Identification and Functional Insight of Lily WRKY Genes Responding to Botrytis Fungal Disease

Genome-wide transcriptome analysis using RNA-Seq of revealed valuable genes responding to biotic stresses. WRKY transcription factors are regulatory proteins playing essential roles in defense processes under environmental stresses, causing considerable losses in flower quality and production. Thirt...

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Published inPlants (Basel) Vol. 10; no. 4; p. 776
Main Authors Kumari, Shipra, Kanth, Bashistha Kumar, Ahn, Ju Young, Kim, Jong Hwa, Lee, Geung-Joo
Format Journal Article
LanguageEnglish
Published Switzerland MDPI AG 15.04.2021
MDPI
Subjects
Amino acids
Annotations
Blight
Botrytis
Botrytis disease
Classification
Conserved sequence
Developmental stages
Drought
Environmental stress
Flowers & plants
Fungal diseases
Gene expression
Genes
Genetic engineering
Genomes
Genotypes
Homology
Leaf blight
Lilium longiflorum
Phylogenetics
Phylogeny
Physiology
Plant species
Proteins
qRT-PCR
Regulatory proteins
Species classification
Stresses
transcription factor
Transcription factors
Transcriptomes
Transcriptomics
WRKY family
WRKY family
transcription factor
Lilium longiflorum
Botrytis disease
qRT-PCR
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Abstract Genome-wide transcriptome analysis using RNA-Seq of revealed valuable genes responding to biotic stresses. WRKY transcription factors are regulatory proteins playing essential roles in defense processes under environmental stresses, causing considerable losses in flower quality and production. Thirty-eight genes were identified from the transcriptomic profile from lily genotypes, exhibiting leaf blight caused by . Lily WRKYs have a highly conserved motif, WRKYGQK, with a common variant, WRKYGKK. Phylogeny of s with homologous genes from other representative plant species classified them into three groups- I, II, and III consisting of seven, 22, and nine genes, respectively. Base on functional annotation, 22 genes were associated with biotic stress, nine with abiotic stress, and seven with others. Sixteen unique were studied to investigate responses to stress conditions using gene expression under biotic and abiotic stress treatments. Five genes- , , , , and -were substantially upregulated, proving to be biotic stress-responsive genes in vivo and in vitro conditions. Moreover, the expression patterns of genes varied in response to drought, heat, cold, and different developmental stages or tissues. Overall, our study provides structural and molecular insights into genes for use in the genetic engineering in against disease.
AbstractList Genome-wide transcriptome analysis using RNA-Seq of revealed valuable genes responding to biotic stresses. WRKY transcription factors are regulatory proteins playing essential roles in defense processes under environmental stresses, causing considerable losses in flower quality and production. Thirty-eight genes were identified from the transcriptomic profile from lily genotypes, exhibiting leaf blight caused by . Lily WRKYs have a highly conserved motif, WRKYGQK, with a common variant, WRKYGKK. Phylogeny of s with homologous genes from other representative plant species classified them into three groups- I, II, and III consisting of seven, 22, and nine genes, respectively. Base on functional annotation, 22 genes were associated with biotic stress, nine with abiotic stress, and seven with others. Sixteen unique were studied to investigate responses to stress conditions using gene expression under biotic and abiotic stress treatments. Five genes- , , , , and -were substantially upregulated, proving to be biotic stress-responsive genes in vivo and in vitro conditions. Moreover, the expression patterns of genes varied in response to drought, heat, cold, and different developmental stages or tissues. Overall, our study provides structural and molecular insights into genes for use in the genetic engineering in against disease.
Genome-wide transcriptome analysis using RNA-Seq of Lilium longiflorum revealed valuable genes responding to biotic stresses. WRKY transcription factors are regulatory proteins playing essential roles in defense processes under environmental stresses, causing considerable losses in flower quality and production. Thirty-eight WRKY genes were identified from the transcriptomic profile from lily genotypes, exhibiting leaf blight caused by Botrytis elliptica. Lily WRKYs have a highly conserved motif, WRKYGQK, with a common variant, WRKYGKK. Phylogeny of LlWRKYs with homologous genes from other representative plant species classified them into three groups- I, II, and III consisting of seven, 22, and nine genes, respectively. Base on functional annotation, 22 LlWRKY genes were associated with biotic stress, nine with abiotic stress, and seven with others. Sixteen unique LlWRKY were studied to investigate responses to stress conditions using gene expression under biotic and abiotic stress treatments. Five genes-LlWRKY3, LlWRKY4, LlWRKY5, LlWRKY10, and LlWRKY12-were substantially upregulated, proving to be biotic stress-responsive genes in vivo and in vitro conditions. Moreover, the expression patterns of LlWRKY genes varied in response to drought, heat, cold, and different developmental stages or tissues. Overall, our study provides structural and molecular insights into LlWRKY genes for use in the genetic engineering in Lilium against Botrytis disease.
Genome-wide transcriptome analysis using RNA-Seq of Lilium longiflorum revealed valuable genes responding to biotic stresses. WRKY transcription factors are regulatory proteins playing essential roles in defense processes under environmental stresses, causing considerable losses in flower quality and production. Thirty-eight WRKY genes were identified from the transcriptomic profile from lily genotypes, exhibiting leaf blight caused by Botrytis elliptica . Lily WRKYs have a highly conserved motif, WRKYGQK, with a common variant, WRKYGKK. Phylogeny of LlWRKY s with homologous genes from other representative plant species classified them into three groups- I, II, and III consisting of seven, 22, and nine genes, respectively. Base on functional annotation, 22 LlWRKY genes were associated with biotic stress, nine with abiotic stress, and seven with others. Sixteen unique LlWRKY were studied to investigate responses to stress conditions using gene expression under biotic and abiotic stress treatments. Five genes— LlWRKY3 , LlWRKY4 , LlWRKY5 , LlWRKY10 , and LlWRKY12 —were substantially upregulated, proving to be biotic stress-responsive genes in vivo and in vitro conditions. Moreover, the expression patterns of LlWRKY genes varied in response to drought, heat, cold, and different developmental stages or tissues. Overall, our study provides structural and molecular insights into LlWRKY genes for use in the genetic engineering in Lilium against Botrytis disease.
Author Lee, Geung-Joo
Kanth, Bashistha Kumar
Kumari, Shipra
Ahn, Ju Young
Kim, Jong Hwa
AuthorAffiliation 2 Department of Smart Agriculture Systems, Chungnam National University, Daejeon 34134, Korea
3 Department of Horticulture, Kangwon National University, Chuncheon 24341, Gangwon-do, Korea; jonghwa@kangwon.ac.kr
1 Department of Horticulture, Chungnam National University, Daejeon 34134, Korea; shiprakumari11@yahoo.com (S.K.); bashistha_kanth@yahoo.com (B.K.K.); wnduds357@naver.com (J.y.A.)
AuthorAffiliation_xml – name: 3 Department of Horticulture, Kangwon National University, Chuncheon 24341, Gangwon-do, Korea; jonghwa@kangwon.ac.kr
– name: 2 Department of Smart Agriculture Systems, Chungnam National University, Daejeon 34134, Korea
– name: 1 Department of Horticulture, Chungnam National University, Daejeon 34134, Korea; shiprakumari11@yahoo.com (S.K.); bashistha_kanth@yahoo.com (B.K.K.); wnduds357@naver.com (J.y.A.)
Author_xml – sequence: 1
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  surname: Kumari
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  givenname: Bashistha Kumar
  surname: Kanth
  fullname: Kanth, Bashistha Kumar
  organization: Department of Horticulture, Chungnam National University, Daejeon 34134, Korea
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  givenname: Ju Young
  surname: Ahn
  fullname: Ahn, Ju Young
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BackLink https://www.ncbi.nlm.nih.gov/pubmed/33920859$$D View this record in MEDLINE/PubMed
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Issue 4
Keywords WRKY family
transcription factor
Lilium longiflorum
Botrytis disease
qRT-PCR
Language English
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Snippet Genome-wide transcriptome analysis using RNA-Seq of revealed valuable genes responding to biotic stresses. WRKY transcription factors are regulatory proteins...
Genome-wide transcriptome analysis using RNA-Seq of Lilium longiflorum revealed valuable genes responding to biotic stresses. WRKY transcription factors are...
Genome-wide transcriptome analysis using RNA-Seq of Lilium longiflorum revealed valuable genes responding to biotic stresses. WRKY transcription factors are...
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SubjectTerms Amino acids
Annotations
Blight
Botrytis
Botrytis disease
Classification
Conserved sequence
Developmental stages
Drought
Environmental stress
Flowers & plants
Fungal diseases
Gene expression
Genes
Genetic engineering
Genomes
Genotypes
Homology
Leaf blight
Lilium longiflorum
Phylogenetics
Phylogeny
Physiology
Plant species
Proteins
qRT-PCR
Regulatory proteins
Species classification
Stresses
transcription factor
Transcription factors
Transcriptomes
Transcriptomics
WRKY family
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Title Genome-Wide Transcriptomic Identification and Functional Insight of Lily WRKY Genes Responding to Botrytis Fungal Disease
URI https://www.ncbi.nlm.nih.gov/pubmed/33920859
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Volume 10
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