Long Noncoding RNAs with snoRNA Ends
We describe the discovery of sno-lncRNAs, a class of nuclear-enriched intron-derived long noncoding RNAs (lncRNAs) that are processed on both ends by the snoRNA machinery. During exonucleolytic trimming, the sequences between the snoRNAs are not degraded, leading to the accumulation of lncRNAs flank...
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| Published in | Molecular cell Vol. 48; no. 2; pp. 219 - 230 |
|---|---|
| Main Authors | , , , , , , |
| Format | Journal Article |
| Language | English |
| Published |
United States
Elsevier Inc
26.10.2012
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| Subjects | |
| Online Access | Get full text |
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| Abstract | We describe the discovery of sno-lncRNAs, a class of nuclear-enriched intron-derived long noncoding RNAs (lncRNAs) that are processed on both ends by the snoRNA machinery. During exonucleolytic trimming, the sequences between the snoRNAs are not degraded, leading to the accumulation of lncRNAs flanked by snoRNA sequences but lacking 5′ caps and 3′ poly(A) tails. Such RNAs are widely expressed in cells and tissues and can be produced by either box C/D or box H/ACA snoRNAs. Importantly, the genomic region encoding one abundant class of sno-lncRNAs (15q11-q13) is specifically deleted in Prader-Willi Syndrome (PWS). The PWS region sno-lncRNAs do not colocalize with nucleoli or Cajal bodies, but rather accumulate near their sites of synthesis. These sno-lncRNAs associate strongly with Fox family splicing regulators and alter patterns of splicing. These results thus implicate a previously unannotated class of lncRNAs in the molecular pathogenesis of PWS.
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► Intron-derived sno-lncRNAs are processed on both ends by the snoRNA machinery ► Sno-lncRNAs are functionally distinct from classical snoRNAs ► The genomic region encoding the most abundant sno-lncRNAs is associated with PWS ► PWS region sno-lncRNAs interact with Fox2 and alter patterns of splicing |
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| AbstractList | We describe the discovery of sno-lncRNAs, a class of nuclear-enriched intron-derived long noncoding RNAs (lncRNAs) that are processed on both ends by the snoRNA machinery. During exonucleolytic trimming, the sequences between the snoRNAs are not degraded, leading to the accumulation of lncRNAs flanked by snoRNA sequences but lacking 5' caps and 3' poly(A) tails. Such RNAs are widely expressed in cells and tissues and can be produced by either box C/D or box H/ACA snoRNAs. Importantly, the genomic region encoding one abundant class of sno-lncRNAs (15q11-q13) is specifically deleted in Prader-Willi Syndrome (PWS). The PWS region sno-lncRNAs do not colocalize with nucleoli or Cajal bodies, but rather accumulate near their sites of synthesis. These sno-lncRNAs associate strongly with Fox family splicing regulators and alter patterns of splicing. These results thus implicate a previously unannotated class of lncRNAs in the molecular pathogenesis of PWS. We describe the discovery of sno-lncRNAs, a class of nuclear-enriched intron-derived long noncoding RNAs (lncRNAs) that are processed on both ends by the snoRNA machinery. During exonucleolytic trimming, the sequences between the snoRNAs are not degraded, leading to the accumulation of lncRNAs flanked by snoRNA sequences but lacking 5′ caps and 3′ poly(A) tails. Such RNAs are widely expressed in cells and tissues and can be produced by either box C/D or box H/ACA snoRNAs. Importantly, the genomic region encoding one abundant class of sno-lncRNAs (15q11-q13) is specifically deleted in Prader-Willi Syndrome (PWS). The PWS region sno-lncRNAs do not colocalize with nucleoli or Cajal bodies, but rather accumulate near their sites of synthesis. These sno-lncRNAs associate strongly with Fox family splicing regulators and alter patterns of splicing. These results thus implicate a previously unannotated class of lncRNAs in the molecular pathogenesis of PWS. [Display omitted] ► Intron-derived sno-lncRNAs are processed on both ends by the snoRNA machinery ► Sno-lncRNAs are functionally distinct from classical snoRNAs ► The genomic region encoding the most abundant sno-lncRNAs is associated with PWS ► PWS region sno-lncRNAs interact with Fox2 and alter patterns of splicing We describe the discovery of sno-lncRNAs, a class of nuclear-enriched intron-derived long noncoding RNAs (lncRNAs) that are processed on both ends by the snoRNA machinery. During exonucleolytic trimming, the sequences between the snoRNAs are not degraded, leading to the accumulation of lncRNAs flanked by snoRNA sequences but lacking 5′ caps and 3′ poly(A) tails. Such RNAs are widely expressed in cells and tissues and can be produced by either box C/D or box H/ACA snoRNAs. Importantly, the genomic region encoding one abundant class of sno-lncRNAs (15q11-q13) is specifically deleted in Prader-Willi Syndrome (PWS). The PWS region sno-lncRNAs do not colocalize with nucleoli or Cajal bodies, but rather accumulate near their sites of synthesis. These sno-lncRNAs associate strongly with Fox family splicing regulators and alter patterns of splicing. These results thus implicate a previously unannotated class of lncRNAs in the molecular pathogenesis of PWS. |
| Author | Zhang, Yang Xiang, Jian-Feng Carmichael, Gordon G. Yang, Li Wu, Yue-Wei Chen, Ling-Ling Yin, Qing-Fei |
| Author_xml | – sequence: 1 givenname: Qing-Fei surname: Yin fullname: Yin, Qing-Fei organization: State Key Laboratory of Molecular Biology, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China – sequence: 2 givenname: Li surname: Yang fullname: Yang, Li organization: Key Laboratory of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China – sequence: 3 givenname: Yang surname: Zhang fullname: Zhang, Yang organization: State Key Laboratory of Molecular Biology, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China – sequence: 4 givenname: Jian-Feng surname: Xiang fullname: Xiang, Jian-Feng organization: State Key Laboratory of Molecular Biology, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China – sequence: 5 givenname: Yue-Wei surname: Wu fullname: Wu, Yue-Wei organization: State Key Laboratory of Molecular Biology, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China – sequence: 6 givenname: Gordon G. surname: Carmichael fullname: Carmichael, Gordon G. email: carmichael@nso2.uchc.edu organization: Department of Genetics and Developmental Biology, University of Connecticut Stem Cell Institute, University of Connecticut Health Center, Farmington, CT 06030-6403, USA – sequence: 7 givenname: Ling-Ling surname: Chen fullname: Chen, Ling-Ling email: linglingchen@sibcb.ac.cn organization: State Key Laboratory of Molecular Biology, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/22959273$$D View this record in MEDLINE/PubMed |
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| ContentType | Journal Article |
| Copyright | 2012 Elsevier Inc. Copyright © 2012 Elsevier Inc. All rights reserved. |
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| Snippet | We describe the discovery of sno-lncRNAs, a class of nuclear-enriched intron-derived long noncoding RNAs (lncRNAs) that are processed on both ends by the... We describe the discovery of sno-lncRNAs, a class of nuclear-enriched intron-derived long noncoding RNAs (lncRNAs) that are processed on both ends by the... |
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| SubjectTerms | Base Sequence Cell Line cell nucleolus Cell Nucleolus - genetics Cell Nucleolus - metabolism Coiled Bodies - genetics Coiled Bodies - metabolism Gene Expression Regulation human diseases Humans Introns Molecular Sequence Data non-coding RNA pathogenesis Prader-Willi Syndrome - genetics Prader-Willi Syndrome - metabolism Repressor Proteins - genetics Repressor Proteins - metabolism RNA Splicing - genetics RNA Splicing Factors RNA, Long Noncoding - genetics RNA, Long Noncoding - metabolism RNA, Small Nucleolar - genetics RNA, Small Nucleolar - metabolism RNA-Binding Proteins - genetics RNA-Binding Proteins - metabolism |
| Title | Long Noncoding RNAs with snoRNA Ends |
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