iTRAQ-Based Quantitative Proteomic Analysis of Embryogenic and Non-embryogenic Calli Derived from a Maize ( Zea mays L.) Inbred Line Y423

Somatic embryos (SE) have potential to rapidly form a whole plant. Generally, SE is thought to be derived from embryogenic calli (EC). However, in maize, not only embryogenic calli (EC, can generate SE) but also nonembryogenic calli (NEC, can't generate SE) can be induced from immature embryos....

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Published inInternational journal of molecular sciences Vol. 19; no. 12; p. 4004
Main Authors Liu, Beibei, Shan, Xiaohui, Wu, Ying, Su, Shengzhong, Li, Shipeng, Liu, Hongkui, Han, Junyou, Yuan, Yaping
Format Journal Article
LanguageEnglish
Published Switzerland MDPI AG 12.12.2018
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Abstract Somatic embryos (SE) have potential to rapidly form a whole plant. Generally, SE is thought to be derived from embryogenic calli (EC). However, in maize, not only embryogenic calli (EC, can generate SE) but also nonembryogenic calli (NEC, can't generate SE) can be induced from immature embryos. In order to understand the differences between EC and NEC and the mechanism of EC, which can easily form SE in maize, differential abundance protein species (DAPS) of EC and NEC from the maize inbred line Y423 were identified by using the isobaric tags for relative and absolute quantification (iTRAQ) proteomic technology. We identified 632 DAPS in EC compared with NEC. The results of bioinformatics analysis showed that EC development might be related to accumulation of pyruvate caused by the DAPS detected in some pathways, such as starch and sucrose metabolism, glycolysis/gluconeogenesis, tricarboxylic acid (TCA) cycle, fatty acid metabolism and phenylpropanoid biosynthesis. Based on the differentially accumulated proteins in EC and NEC, a series of DAPS related with pyruvate biosynthesis and suppression of acetyl-CoA might be responsible for the differences between EC and NEC cells. Furthermore, we speculate that the decreased abundance of enzymes/proteins involved in phenylpropanoid biosynthesis pathway in the EC cells results in reducing of lignin substances, which might affect the maize callus morphology.
AbstractList Somatic embryos (SE) have potential to rapidly form a whole plant. Generally, SE is thought to be derived from embryogenic calli (EC). However, in maize, not only embryogenic calli (EC, can generate SE) but also nonembryogenic calli (NEC, can't generate SE) can be induced from immature embryos. In order to understand the differences between EC and NEC and the mechanism of EC, which can easily form SE in maize, differential abundance protein species (DAPS) of EC and NEC from the maize inbred line Y423 were identified by using the isobaric tags for relative and absolute quantification (iTRAQ) proteomic technology. We identified 632 DAPS in EC compared with NEC. The results of bioinformatics analysis showed that EC development might be related to accumulation of pyruvate caused by the DAPS detected in some pathways, such as starch and sucrose metabolism, glycolysis/gluconeogenesis, tricarboxylic acid (TCA) cycle, fatty acid metabolism and phenylpropanoid biosynthesis. Based on the differentially accumulated proteins in EC and NEC, a series of DAPS related with pyruvate biosynthesis and suppression of acetyl-CoA might be responsible for the differences between EC and NEC cells. Furthermore, we speculate that the decreased abundance of enzymes/proteins involved in phenylpropanoid biosynthesis pathway in the EC cells results in reducing of lignin substances, which might affect the maize callus morphology.
Author Han, Junyou
Su, Shengzhong
Shan, Xiaohui
Li, Shipeng
Liu, Beibei
Wu, Ying
Yuan, Yaping
Liu, Hongkui
AuthorAffiliation College of Plant Science, Jilin University, Changchun 130062, China; liubeibei1985@126.com (B.L.); shanxiaohui@jlu.edu.cn (X.S.); wuying@jlu.edu.cn (Y.W.); sushengzhong@jlu.edu.cn (S.S.); lisp@jlu.edu.cn (S.L.); liuhk@jlu.edu.cn (H.L.); hanjy@jlu.edu.cn (J.H.)
AuthorAffiliation_xml – name: College of Plant Science, Jilin University, Changchun 130062, China; liubeibei1985@126.com (B.L.); shanxiaohui@jlu.edu.cn (X.S.); wuying@jlu.edu.cn (Y.W.); sushengzhong@jlu.edu.cn (S.S.); lisp@jlu.edu.cn (S.L.); liuhk@jlu.edu.cn (H.L.); hanjy@jlu.edu.cn (J.H.)
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Keywords iTRAQ
Zea mays
proteomics
pyruvate biosynthesis
somatic embryogenesis
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Snippet Somatic embryos (SE) have potential to rapidly form a whole plant. Generally, SE is thought to be derived from embryogenic calli (EC). However, in maize, not...
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SubjectTerms Agricultural biotechnology
Bioinformatics
Biosynthesis
Callus
Cell cycle
Cell division
Embryos
Gluconeogenesis
Glycolysis
Inbreeding
iTRAQ
Metabolism
Peptides
Proteins
proteomics
pyruvate biosynthesis
Pyruvic acid
Signal transduction
somatic embryogenesis
Somatic embryos
Sucrose
Tricarboxylic acid cycle
Zea mays
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Title iTRAQ-Based Quantitative Proteomic Analysis of Embryogenic and Non-embryogenic Calli Derived from a Maize ( Zea mays L.) Inbred Line Y423
URI https://www.ncbi.nlm.nih.gov/pubmed/30545080
https://www.proquest.com/docview/2582844133/abstract/
https://search.proquest.com/docview/2157678598
https://pubmed.ncbi.nlm.nih.gov/PMC6321184
https://doaj.org/article/23d1d0a5ca6f4040bdc712aa0b5f9c65
Volume 19
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