Genetic Differentiation of Geographically Overlapping Sister Species of Eucalyptus in Northern Australia
ABSTRACT In the large genus Eucalyptus, which dominates most of Australia's open forests and woodlands, genetic studies commonly show signs of introgression between closely related, co‐occurring species. Here we assessed genetic variation in two sister species with geographically overlapping di...
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Published in | Ecology and evolution Vol. 15; no. 6; pp. e71454 - n/a |
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Main Authors | , , , , , , , , , , , |
Format | Journal Article |
Language | English |
Published |
England
John Wiley & Sons, Inc
01.06.2025
John Wiley and Sons Inc Wiley |
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Abstract | ABSTRACT
In the large genus Eucalyptus, which dominates most of Australia's open forests and woodlands, genetic studies commonly show signs of introgression between closely related, co‐occurring species. Here we assessed genetic variation in two sister species with geographically overlapping distributions in northern Australia. One species, Eucalyptus tetrodonta, is a dominant species in many lowland savannas. It is found on gravelly red‐lateritic to sandy soils, with a large distribution spanning over 2000 km east‐to‐west and 1000 km north‐to‐south, from the Kimberley region of Western Australia to northern Queensland. The other, E. megasapala, was taxonomically separated from E. tetrodonta in 2006 on the basis of its larger sepals, prominently ribbed buds and operculum, and fruit and peduncle shape. It typically occurs on rocky substrates in northeast Queensland, within the range of E. tetrodonta, where the two species can form stands within a few hundred metres of one another. Contrary to expectations, DArTseq genotyping showed strong differentiation between the two species (FST: 0.28) and little evidence of genetic admixture. Analyses of data from the Australasian Virtual Herbarium showed significant differences in flowering times between the two species. SNP outlier analyses identified multiple loci potentially under selection that are associated with differences between the two species, including the gene FT‐interacting protein 7 (FTIP7), which is known to modulate flowering time in plants. Based on current data, it is unclear whether differentiation of these species is the product of parapatric/sympatric speciation or if it was allopatric with secondary geographic overlap. Within E. tetrodonta, genetic variation showed a strong signal of isolation‐by‐distance, with an east–west trend in the pattern of genetic relatedness. The most substantial genetic break in E. tetrodonta was associated with the Carpentarian Gap, a region of seasonally arid, alluvial plains on the southern margin of the Gulf of Carpentaria known as a biogeographic barrier for other Australian biota.
We assessed genetic variation in two closely related Eucalyptus species, E. tetrodonta and E. megasapala, finding strong genetic differentiation and little introgression despite geographic overlap. SNP outlier analyses identified loci under selection, and a genetic break in E. tetrodonta linked to the Carpentarian Gap, suggesting complex speciation processes. |
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AbstractList | ABSTRACT
In the large genus Eucalyptus, which dominates most of Australia's open forests and woodlands, genetic studies commonly show signs of introgression between closely related, co‐occurring species. Here we assessed genetic variation in two sister species with geographically overlapping distributions in northern Australia. One species, Eucalyptus tetrodonta, is a dominant species in many lowland savannas. It is found on gravelly red‐lateritic to sandy soils, with a large distribution spanning over 2000 km east‐to‐west and 1000 km north‐to‐south, from the Kimberley region of Western Australia to northern Queensland. The other, E. megasapala, was taxonomically separated from E. tetrodonta in 2006 on the basis of its larger sepals, prominently ribbed buds and operculum, and fruit and peduncle shape. It typically occurs on rocky substrates in northeast Queensland, within the range of E. tetrodonta, where the two species can form stands within a few hundred metres of one another. Contrary to expectations, DArTseq genotyping showed strong differentiation between the two species (FST: 0.28) and little evidence of genetic admixture. Analyses of data from the Australasian Virtual Herbarium showed significant differences in flowering times between the two species. SNP outlier analyses identified multiple loci potentially under selection that are associated with differences between the two species, including the gene FT‐interacting protein 7 (FTIP7), which is known to modulate flowering time in plants. Based on current data, it is unclear whether differentiation of these species is the product of parapatric/sympatric speciation or if it was allopatric with secondary geographic overlap. Within E. tetrodonta, genetic variation showed a strong signal of isolation‐by‐distance, with an east–west trend in the pattern of genetic relatedness. The most substantial genetic break in E. tetrodonta was associated with the Carpentarian Gap, a region of seasonally arid, alluvial plains on the southern margin of the Gulf of Carpentaria known as a biogeographic barrier for other Australian biota.
We assessed genetic variation in two closely related Eucalyptus species, E. tetrodonta and E. megasapala, finding strong genetic differentiation and little introgression despite geographic overlap. SNP outlier analyses identified loci under selection, and a genetic break in E. tetrodonta linked to the Carpentarian Gap, suggesting complex speciation processes. In the large genus Eucalyptus, which dominates most of Australia's open forests and woodlands, genetic studies commonly show signs of introgression between closely related, co-occurring species. Here we assessed genetic variation in two sister species with geographically overlapping distributions in northern Australia. One species, Eucalyptus tetrodonta, is a dominant species in many lowland savannas. It is found on gravelly red-lateritic to sandy soils, with a large distribution spanning over 2000 km east-to-west and 1000 km north-to-south, from the Kimberley region of Western Australia to northern Queensland. The other, E. megasapala, was taxonomically separated from E. tetrodonta in 2006 on the basis of its larger sepals, prominently ribbed buds and operculum, and fruit and peduncle shape. It typically occurs on rocky substrates in northeast Queensland, within the range of E. tetrodonta, where the two species can form stands within a few hundred metres of one another. Contrary to expectations, DArTseq genotyping showed strong differentiation between the two species (F ST: 0.28) and little evidence of genetic admixture. Analyses of data from the Australasian Virtual Herbarium showed significant differences in flowering times between the two species. SNP outlier analyses identified multiple loci potentially under selection that are associated with differences between the two species, including the gene FT-interacting protein 7 (FTIP7), which is known to modulate flowering time in plants. Based on current data, it is unclear whether differentiation of these species is the product of parapatric/sympatric speciation or if it was allopatric with secondary geographic overlap. Within E. tetrodonta, genetic variation showed a strong signal of isolation-by-distance, with an east-west trend in the pattern of genetic relatedness. The most substantial genetic break in E. tetrodonta was associated with the Carpentarian Gap, a region of seasonally arid, alluvial plains on the southern margin of the Gulf of Carpentaria known as a biogeographic barrier for other Australian biota.In the large genus Eucalyptus, which dominates most of Australia's open forests and woodlands, genetic studies commonly show signs of introgression between closely related, co-occurring species. Here we assessed genetic variation in two sister species with geographically overlapping distributions in northern Australia. One species, Eucalyptus tetrodonta, is a dominant species in many lowland savannas. It is found on gravelly red-lateritic to sandy soils, with a large distribution spanning over 2000 km east-to-west and 1000 km north-to-south, from the Kimberley region of Western Australia to northern Queensland. The other, E. megasapala, was taxonomically separated from E. tetrodonta in 2006 on the basis of its larger sepals, prominently ribbed buds and operculum, and fruit and peduncle shape. It typically occurs on rocky substrates in northeast Queensland, within the range of E. tetrodonta, where the two species can form stands within a few hundred metres of one another. Contrary to expectations, DArTseq genotyping showed strong differentiation between the two species (F ST: 0.28) and little evidence of genetic admixture. Analyses of data from the Australasian Virtual Herbarium showed significant differences in flowering times between the two species. SNP outlier analyses identified multiple loci potentially under selection that are associated with differences between the two species, including the gene FT-interacting protein 7 (FTIP7), which is known to modulate flowering time in plants. Based on current data, it is unclear whether differentiation of these species is the product of parapatric/sympatric speciation or if it was allopatric with secondary geographic overlap. Within E. tetrodonta, genetic variation showed a strong signal of isolation-by-distance, with an east-west trend in the pattern of genetic relatedness. The most substantial genetic break in E. tetrodonta was associated with the Carpentarian Gap, a region of seasonally arid, alluvial plains on the southern margin of the Gulf of Carpentaria known as a biogeographic barrier for other Australian biota. ABSTRACT In the large genus Eucalyptus, which dominates most of Australia's open forests and woodlands, genetic studies commonly show signs of introgression between closely related, co‐occurring species. Here we assessed genetic variation in two sister species with geographically overlapping distributions in northern Australia. One species, Eucalyptus tetrodonta, is a dominant species in many lowland savannas. It is found on gravelly red‐lateritic to sandy soils, with a large distribution spanning over 2000 km east‐to‐west and 1000 km north‐to‐south, from the Kimberley region of Western Australia to northern Queensland. The other, E. megasapala, was taxonomically separated from E. tetrodonta in 2006 on the basis of its larger sepals, prominently ribbed buds and operculum, and fruit and peduncle shape. It typically occurs on rocky substrates in northeast Queensland, within the range of E. tetrodonta, where the two species can form stands within a few hundred metres of one another. Contrary to expectations, DArTseq genotyping showed strong differentiation between the two species (FST: 0.28) and little evidence of genetic admixture. Analyses of data from the Australasian Virtual Herbarium showed significant differences in flowering times between the two species. SNP outlier analyses identified multiple loci potentially under selection that are associated with differences between the two species, including the gene FT‐interacting protein 7 (FTIP7), which is known to modulate flowering time in plants. Based on current data, it is unclear whether differentiation of these species is the product of parapatric/sympatric speciation or if it was allopatric with secondary geographic overlap. Within E. tetrodonta, genetic variation showed a strong signal of isolation‐by‐distance, with an east–west trend in the pattern of genetic relatedness. The most substantial genetic break in E. tetrodonta was associated with the Carpentarian Gap, a region of seasonally arid, alluvial plains on the southern margin of the Gulf of Carpentaria known as a biogeographic barrier for other Australian biota. In the large genus Eucalyptus , which dominates most of Australia's open forests and woodlands, genetic studies commonly show signs of introgression between closely related, co‐occurring species. Here we assessed genetic variation in two sister species with geographically overlapping distributions in northern Australia. One species, Eucalyptus tetrodonta , is a dominant species in many lowland savannas. It is found on gravelly red‐lateritic to sandy soils, with a large distribution spanning over 2000 km east‐to‐west and 1000 km north‐to‐south, from the Kimberley region of Western Australia to northern Queensland. The other, E. megasapala , was taxonomically separated from E. tetrodonta in 2006 on the basis of its larger sepals, prominently ribbed buds and operculum, and fruit and peduncle shape. It typically occurs on rocky substrates in northeast Queensland, within the range of E. tetrodonta , where the two species can form stands within a few hundred metres of one another. Contrary to expectations, DArTseq genotyping showed strong differentiation between the two species ( F ST : 0.28) and little evidence of genetic admixture. Analyses of data from the Australasian Virtual Herbarium showed significant differences in flowering times between the two species. SNP outlier analyses identified multiple loci potentially under selection that are associated with differences between the two species, including the gene FT‐interacting protein 7 (FTIP7), which is known to modulate flowering time in plants. Based on current data, it is unclear whether differentiation of these species is the product of parapatric/sympatric speciation or if it was allopatric with secondary geographic overlap. Within E. tetrodonta , genetic variation showed a strong signal of isolation‐by‐distance, with an east–west trend in the pattern of genetic relatedness. The most substantial genetic break in E. tetrodonta was associated with the Carpentarian Gap, a region of seasonally arid, alluvial plains on the southern margin of the Gulf of Carpentaria known as a biogeographic barrier for other Australian biota. We assessed genetic variation in two closely related Eucalyptus species, E. tetrodonta and E. megasapala , finding strong genetic differentiation and little introgression despite geographic overlap. SNP outlier analyses identified loci under selection, and a genetic break in E. tetrodonta linked to the Carpentarian Gap, suggesting complex speciation processes. In the large genus Eucalyptus , which dominates most of Australia's open forests and woodlands, genetic studies commonly show signs of introgression between closely related, co‐occurring species. Here we assessed genetic variation in two sister species with geographically overlapping distributions in northern Australia. One species, Eucalyptus tetrodonta , is a dominant species in many lowland savannas. It is found on gravelly red‐lateritic to sandy soils, with a large distribution spanning over 2000 km east‐to‐west and 1000 km north‐to‐south, from the Kimberley region of Western Australia to northern Queensland. The other, E. megasapala , was taxonomically separated from E. tetrodonta in 2006 on the basis of its larger sepals, prominently ribbed buds and operculum, and fruit and peduncle shape. It typically occurs on rocky substrates in northeast Queensland, within the range of E. tetrodonta , where the two species can form stands within a few hundred metres of one another. Contrary to expectations, DArTseq genotyping showed strong differentiation between the two species ( F ST : 0.28) and little evidence of genetic admixture. Analyses of data from the Australasian Virtual Herbarium showed significant differences in flowering times between the two species. SNP outlier analyses identified multiple loci potentially under selection that are associated with differences between the two species, including the gene FT‐interacting protein 7 (FTIP7), which is known to modulate flowering time in plants. Based on current data, it is unclear whether differentiation of these species is the product of parapatric/sympatric speciation or if it was allopatric with secondary geographic overlap. Within E. tetrodonta , genetic variation showed a strong signal of isolation‐by‐distance, with an east–west trend in the pattern of genetic relatedness. The most substantial genetic break in E. tetrodonta was associated with the Carpentarian Gap, a region of seasonally arid, alluvial plains on the southern margin of the Gulf of Carpentaria known as a biogeographic barrier for other Australian biota. In the large genus , which dominates most of Australia's open forests and woodlands, genetic studies commonly show signs of introgression between closely related, co-occurring species. Here we assessed genetic variation in two sister species with geographically overlapping distributions in northern Australia. One species, , is a dominant species in many lowland savannas. It is found on gravelly red-lateritic to sandy soils, with a large distribution spanning over 2000 km east-to-west and 1000 km north-to-south, from the Kimberley region of Western Australia to northern Queensland. The other, , was taxonomically separated from in 2006 on the basis of its larger sepals, prominently ribbed buds and operculum, and fruit and peduncle shape. It typically occurs on rocky substrates in northeast Queensland, within the range of , where the two species can form stands within a few hundred metres of one another. Contrary to expectations, DArTseq genotyping showed strong differentiation between the two species ( : 0.28) and little evidence of genetic admixture. Analyses of data from the Australasian Virtual Herbarium showed significant differences in flowering times between the two species. SNP outlier analyses identified multiple loci potentially under selection that are associated with differences between the two species, including the gene FT-interacting protein 7 (FTIP7), which is known to modulate flowering time in plants. Based on current data, it is unclear whether differentiation of these species is the product of parapatric/sympatric speciation or if it was allopatric with secondary geographic overlap. Within , genetic variation showed a strong signal of isolation-by-distance, with an east-west trend in the pattern of genetic relatedness. The most substantial genetic break in was associated with the Carpentarian Gap, a region of seasonally arid, alluvial plains on the southern margin of the Gulf of Carpentaria known as a biogeographic barrier for other Australian biota. |
Author | Orel, Harvey K. Docherty, Philip G. Cantrill, David J. Udovicic, Frank Murphy, Daniel J. Franklin, Donald C. Fowler, Rachael M. Fahey, Patrick S. Bayly, Michael J. Lewis, Donna White, Adam McLay, Todd G. B. |
AuthorAffiliation | 1 School of BioSciences, the University of Melbourne Parkville Victoria Australia 4 Department of the Environment, Tourism, Science and Innovation Queensland Herbarium and Biodiversity Science Toowong Queensland Australia 3 Royal Botanic Gardens Victoria Melbourne Victoria Australia 5 Queensland Alliance for Agriculture and Food Innovation, the University of Queensland St Lucia Queensland Australia 8 Independent Scholar Cable Beach Western Australia Australia 6 Research Institute for Environment & Livelihoods, Charles Darwin University Darwin Northwest Territories Australia 7 Terrestrial Ecosystem Research Network (TERN) University of Adelaide Adelaide South Australia Australia 2 National Biodiversity DNA Library Environomics, NCMI, CSIRO Parkville Victoria Australia 9 Australian National Herbarium, Centre for Australian National Biodiversity Research Canberra Australian Capital Territory Australia |
AuthorAffiliation_xml | – name: 2 National Biodiversity DNA Library Environomics, NCMI, CSIRO Parkville Victoria Australia – name: 5 Queensland Alliance for Agriculture and Food Innovation, the University of Queensland St Lucia Queensland Australia – name: 3 Royal Botanic Gardens Victoria Melbourne Victoria Australia – name: 8 Independent Scholar Cable Beach Western Australia Australia – name: 7 Terrestrial Ecosystem Research Network (TERN) University of Adelaide Adelaide South Australia Australia – name: 9 Australian National Herbarium, Centre for Australian National Biodiversity Research Canberra Australian Capital Territory Australia – name: 1 School of BioSciences, the University of Melbourne Parkville Victoria Australia – name: 4 Department of the Environment, Tourism, Science and Innovation Queensland Herbarium and Biodiversity Science Toowong Queensland Australia – name: 6 Research Institute for Environment & Livelihoods, Charles Darwin University Darwin Northwest Territories Australia |
Author_xml | – sequence: 1 givenname: Harvey K. surname: Orel fullname: Orel, Harvey K. organization: School of BioSciences, the University of Melbourne – sequence: 2 givenname: Todd G. B. surname: McLay fullname: McLay, Todd G. B. organization: Royal Botanic Gardens Victoria – sequence: 3 givenname: Daniel J. surname: Murphy fullname: Murphy, Daniel J. organization: Royal Botanic Gardens Victoria – sequence: 4 givenname: David J. surname: Cantrill fullname: Cantrill, David J. organization: Royal Botanic Gardens Victoria – sequence: 5 givenname: Frank surname: Udovicic fullname: Udovicic, Frank organization: Royal Botanic Gardens Victoria – sequence: 6 givenname: Patrick S. surname: Fahey fullname: Fahey, Patrick S. organization: Queensland Alliance for Agriculture and Food Innovation, the University of Queensland – sequence: 7 givenname: Donald C. surname: Franklin fullname: Franklin, Donald C. organization: Research Institute for Environment & Livelihoods, Charles Darwin University – sequence: 8 givenname: Donna surname: Lewis fullname: Lewis, Donna organization: University of Adelaide – sequence: 9 givenname: Philip G. surname: Docherty fullname: Docherty, Philip G. organization: Independent Scholar – sequence: 10 givenname: Adam surname: White fullname: White, Adam organization: Australian National Herbarium, Centre for Australian National Biodiversity Research – sequence: 11 givenname: Michael J. surname: Bayly fullname: Bayly, Michael J. organization: School of BioSciences, the University of Melbourne – sequence: 12 givenname: Rachael M. orcidid: 0000-0002-8953-7036 surname: Fowler fullname: Fowler, Rachael M. email: rachael.fowler@unimelb.edu.au organization: Royal Botanic Gardens Victoria |
BackLink | https://www.ncbi.nlm.nih.gov/pubmed/40552100$$D View this record in MEDLINE/PubMed |
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IngestDate | Wed Aug 27 01:29:35 EDT 2025 Thu Aug 21 18:26:36 EDT 2025 Fri Jul 11 17:01:26 EDT 2025 Sat Aug 23 14:00:17 EDT 2025 Tue Jul 08 01:41:13 EDT 2025 Thu Aug 21 00:35:36 EDT 2025 Fri Jun 27 10:01:08 EDT 2025 |
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Keywords | Eudesmia Eucalyptus Australia introgression sister speciation phylogeography |
Language | English |
License | Attribution 2025 The Author(s). Ecology and Evolution published by British Ecological Society and John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
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Notes | Funding This work was supported by Eucalypt Australia, 59 735 884 485. Harvey Orel and Todd McLay should be considered joint first author. ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 14 content type line 23 Funding: This work was supported by Eucalypt Australia, 59 735 884 485. |
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In the large genus Eucalyptus, which dominates most of Australia's open forests and woodlands, genetic studies commonly show signs of introgression... In the large genus Eucalyptus , which dominates most of Australia's open forests and woodlands, genetic studies commonly show signs of introgression between... In the large genus , which dominates most of Australia's open forests and woodlands, genetic studies commonly show signs of introgression between closely... ABSTRACT In the large genus Eucalyptus, which dominates most of Australia's open forests and woodlands, genetic studies commonly show signs of introgression... In the large genus Eucalyptus, which dominates most of Australia's open forests and woodlands, genetic studies commonly show signs of introgression between... In the large genus Eucalyptus , which dominates most of Australia's open forests and woodlands, genetic studies commonly show signs of introgression between... |
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SubjectTerms | Alluvial plains Australia Biodiversity Biogeography Biota Climate change Differentiation Dominant species Eucalyptus Eudesmia Flowering Genetic analysis Genetic diversity Genomes Genotyping Gravel Interspecific hybridization introgression Operculum Phylogenetics phylogeography Plants (botany) Sandy soils Sepals Sibling species Single-nucleotide polymorphism sister speciation Speciation Sympatric populations Woodlands |
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Title | Genetic Differentiation of Geographically Overlapping Sister Species of Eucalyptus in Northern Australia |
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