Genetic Differentiation of Geographically Overlapping Sister Species of Eucalyptus in Northern Australia

ABSTRACT In the large genus Eucalyptus, which dominates most of Australia's open forests and woodlands, genetic studies commonly show signs of introgression between closely related, co‐occurring species. Here we assessed genetic variation in two sister species with geographically overlapping di...

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Published inEcology and evolution Vol. 15; no. 6; pp. e71454 - n/a
Main Authors Orel, Harvey K., McLay, Todd G. B., Murphy, Daniel J., Cantrill, David J., Udovicic, Frank, Fahey, Patrick S., Franklin, Donald C., Lewis, Donna, Docherty, Philip G., White, Adam, Bayly, Michael J., Fowler, Rachael M.
Format Journal Article
LanguageEnglish
Published England John Wiley & Sons, Inc 01.06.2025
John Wiley and Sons Inc
Wiley
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Abstract ABSTRACT In the large genus Eucalyptus, which dominates most of Australia's open forests and woodlands, genetic studies commonly show signs of introgression between closely related, co‐occurring species. Here we assessed genetic variation in two sister species with geographically overlapping distributions in northern Australia. One species, Eucalyptus tetrodonta, is a dominant species in many lowland savannas. It is found on gravelly red‐lateritic to sandy soils, with a large distribution spanning over 2000 km east‐to‐west and 1000 km north‐to‐south, from the Kimberley region of Western Australia to northern Queensland. The other, E. megasapala, was taxonomically separated from E. tetrodonta in 2006 on the basis of its larger sepals, prominently ribbed buds and operculum, and fruit and peduncle shape. It typically occurs on rocky substrates in northeast Queensland, within the range of E. tetrodonta, where the two species can form stands within a few hundred metres of one another. Contrary to expectations, DArTseq genotyping showed strong differentiation between the two species (FST: 0.28) and little evidence of genetic admixture. Analyses of data from the Australasian Virtual Herbarium showed significant differences in flowering times between the two species. SNP outlier analyses identified multiple loci potentially under selection that are associated with differences between the two species, including the gene FT‐interacting protein 7 (FTIP7), which is known to modulate flowering time in plants. Based on current data, it is unclear whether differentiation of these species is the product of parapatric/sympatric speciation or if it was allopatric with secondary geographic overlap. Within E. tetrodonta, genetic variation showed a strong signal of isolation‐by‐distance, with an east–west trend in the pattern of genetic relatedness. The most substantial genetic break in E. tetrodonta was associated with the Carpentarian Gap, a region of seasonally arid, alluvial plains on the southern margin of the Gulf of Carpentaria known as a biogeographic barrier for other Australian biota. We assessed genetic variation in two closely related Eucalyptus species, E. tetrodonta and E. megasapala, finding strong genetic differentiation and little introgression despite geographic overlap. SNP outlier analyses identified loci under selection, and a genetic break in E. tetrodonta linked to the Carpentarian Gap, suggesting complex speciation processes.
AbstractList ABSTRACT In the large genus Eucalyptus, which dominates most of Australia's open forests and woodlands, genetic studies commonly show signs of introgression between closely related, co‐occurring species. Here we assessed genetic variation in two sister species with geographically overlapping distributions in northern Australia. One species, Eucalyptus tetrodonta, is a dominant species in many lowland savannas. It is found on gravelly red‐lateritic to sandy soils, with a large distribution spanning over 2000 km east‐to‐west and 1000 km north‐to‐south, from the Kimberley region of Western Australia to northern Queensland. The other, E. megasapala, was taxonomically separated from E. tetrodonta in 2006 on the basis of its larger sepals, prominently ribbed buds and operculum, and fruit and peduncle shape. It typically occurs on rocky substrates in northeast Queensland, within the range of E. tetrodonta, where the two species can form stands within a few hundred metres of one another. Contrary to expectations, DArTseq genotyping showed strong differentiation between the two species (FST: 0.28) and little evidence of genetic admixture. Analyses of data from the Australasian Virtual Herbarium showed significant differences in flowering times between the two species. SNP outlier analyses identified multiple loci potentially under selection that are associated with differences between the two species, including the gene FT‐interacting protein 7 (FTIP7), which is known to modulate flowering time in plants. Based on current data, it is unclear whether differentiation of these species is the product of parapatric/sympatric speciation or if it was allopatric with secondary geographic overlap. Within E. tetrodonta, genetic variation showed a strong signal of isolation‐by‐distance, with an east–west trend in the pattern of genetic relatedness. The most substantial genetic break in E. tetrodonta was associated with the Carpentarian Gap, a region of seasonally arid, alluvial plains on the southern margin of the Gulf of Carpentaria known as a biogeographic barrier for other Australian biota. We assessed genetic variation in two closely related Eucalyptus species, E. tetrodonta and E. megasapala, finding strong genetic differentiation and little introgression despite geographic overlap. SNP outlier analyses identified loci under selection, and a genetic break in E. tetrodonta linked to the Carpentarian Gap, suggesting complex speciation processes.
In the large genus Eucalyptus, which dominates most of Australia's open forests and woodlands, genetic studies commonly show signs of introgression between closely related, co-occurring species. Here we assessed genetic variation in two sister species with geographically overlapping distributions in northern Australia. One species, Eucalyptus tetrodonta, is a dominant species in many lowland savannas. It is found on gravelly red-lateritic to sandy soils, with a large distribution spanning over 2000 km east-to-west and 1000 km north-to-south, from the Kimberley region of Western Australia to northern Queensland. The other, E. megasapala, was taxonomically separated from E. tetrodonta in 2006 on the basis of its larger sepals, prominently ribbed buds and operculum, and fruit and peduncle shape. It typically occurs on rocky substrates in northeast Queensland, within the range of E. tetrodonta, where the two species can form stands within a few hundred metres of one another. Contrary to expectations, DArTseq genotyping showed strong differentiation between the two species (F ST: 0.28) and little evidence of genetic admixture. Analyses of data from the Australasian Virtual Herbarium showed significant differences in flowering times between the two species. SNP outlier analyses identified multiple loci potentially under selection that are associated with differences between the two species, including the gene FT-interacting protein 7 (FTIP7), which is known to modulate flowering time in plants. Based on current data, it is unclear whether differentiation of these species is the product of parapatric/sympatric speciation or if it was allopatric with secondary geographic overlap. Within E. tetrodonta, genetic variation showed a strong signal of isolation-by-distance, with an east-west trend in the pattern of genetic relatedness. The most substantial genetic break in E. tetrodonta was associated with the Carpentarian Gap, a region of seasonally arid, alluvial plains on the southern margin of the Gulf of Carpentaria known as a biogeographic barrier for other Australian biota.In the large genus Eucalyptus, which dominates most of Australia's open forests and woodlands, genetic studies commonly show signs of introgression between closely related, co-occurring species. Here we assessed genetic variation in two sister species with geographically overlapping distributions in northern Australia. One species, Eucalyptus tetrodonta, is a dominant species in many lowland savannas. It is found on gravelly red-lateritic to sandy soils, with a large distribution spanning over 2000 km east-to-west and 1000 km north-to-south, from the Kimberley region of Western Australia to northern Queensland. The other, E. megasapala, was taxonomically separated from E. tetrodonta in 2006 on the basis of its larger sepals, prominently ribbed buds and operculum, and fruit and peduncle shape. It typically occurs on rocky substrates in northeast Queensland, within the range of E. tetrodonta, where the two species can form stands within a few hundred metres of one another. Contrary to expectations, DArTseq genotyping showed strong differentiation between the two species (F ST: 0.28) and little evidence of genetic admixture. Analyses of data from the Australasian Virtual Herbarium showed significant differences in flowering times between the two species. SNP outlier analyses identified multiple loci potentially under selection that are associated with differences between the two species, including the gene FT-interacting protein 7 (FTIP7), which is known to modulate flowering time in plants. Based on current data, it is unclear whether differentiation of these species is the product of parapatric/sympatric speciation or if it was allopatric with secondary geographic overlap. Within E. tetrodonta, genetic variation showed a strong signal of isolation-by-distance, with an east-west trend in the pattern of genetic relatedness. The most substantial genetic break in E. tetrodonta was associated with the Carpentarian Gap, a region of seasonally arid, alluvial plains on the southern margin of the Gulf of Carpentaria known as a biogeographic barrier for other Australian biota.
ABSTRACT In the large genus Eucalyptus, which dominates most of Australia's open forests and woodlands, genetic studies commonly show signs of introgression between closely related, co‐occurring species. Here we assessed genetic variation in two sister species with geographically overlapping distributions in northern Australia. One species, Eucalyptus tetrodonta, is a dominant species in many lowland savannas. It is found on gravelly red‐lateritic to sandy soils, with a large distribution spanning over 2000 km east‐to‐west and 1000 km north‐to‐south, from the Kimberley region of Western Australia to northern Queensland. The other, E. megasapala, was taxonomically separated from E. tetrodonta in 2006 on the basis of its larger sepals, prominently ribbed buds and operculum, and fruit and peduncle shape. It typically occurs on rocky substrates in northeast Queensland, within the range of E. tetrodonta, where the two species can form stands within a few hundred metres of one another. Contrary to expectations, DArTseq genotyping showed strong differentiation between the two species (FST: 0.28) and little evidence of genetic admixture. Analyses of data from the Australasian Virtual Herbarium showed significant differences in flowering times between the two species. SNP outlier analyses identified multiple loci potentially under selection that are associated with differences between the two species, including the gene FT‐interacting protein 7 (FTIP7), which is known to modulate flowering time in plants. Based on current data, it is unclear whether differentiation of these species is the product of parapatric/sympatric speciation or if it was allopatric with secondary geographic overlap. Within E. tetrodonta, genetic variation showed a strong signal of isolation‐by‐distance, with an east–west trend in the pattern of genetic relatedness. The most substantial genetic break in E. tetrodonta was associated with the Carpentarian Gap, a region of seasonally arid, alluvial plains on the southern margin of the Gulf of Carpentaria known as a biogeographic barrier for other Australian biota.
In the large genus Eucalyptus , which dominates most of Australia's open forests and woodlands, genetic studies commonly show signs of introgression between closely related, co‐occurring species. Here we assessed genetic variation in two sister species with geographically overlapping distributions in northern Australia. One species, Eucalyptus tetrodonta , is a dominant species in many lowland savannas. It is found on gravelly red‐lateritic to sandy soils, with a large distribution spanning over 2000 km east‐to‐west and 1000 km north‐to‐south, from the Kimberley region of Western Australia to northern Queensland. The other, E. megasapala , was taxonomically separated from E. tetrodonta in 2006 on the basis of its larger sepals, prominently ribbed buds and operculum, and fruit and peduncle shape. It typically occurs on rocky substrates in northeast Queensland, within the range of E. tetrodonta , where the two species can form stands within a few hundred metres of one another. Contrary to expectations, DArTseq genotyping showed strong differentiation between the two species ( F ST : 0.28) and little evidence of genetic admixture. Analyses of data from the Australasian Virtual Herbarium showed significant differences in flowering times between the two species. SNP outlier analyses identified multiple loci potentially under selection that are associated with differences between the two species, including the gene FT‐interacting protein 7 (FTIP7), which is known to modulate flowering time in plants. Based on current data, it is unclear whether differentiation of these species is the product of parapatric/sympatric speciation or if it was allopatric with secondary geographic overlap. Within E. tetrodonta , genetic variation showed a strong signal of isolation‐by‐distance, with an east–west trend in the pattern of genetic relatedness. The most substantial genetic break in E. tetrodonta was associated with the Carpentarian Gap, a region of seasonally arid, alluvial plains on the southern margin of the Gulf of Carpentaria known as a biogeographic barrier for other Australian biota. We assessed genetic variation in two closely related Eucalyptus species, E. tetrodonta and E. megasapala , finding strong genetic differentiation and little introgression despite geographic overlap. SNP outlier analyses identified loci under selection, and a genetic break in E. tetrodonta linked to the Carpentarian Gap, suggesting complex speciation processes.
In the large genus Eucalyptus , which dominates most of Australia's open forests and woodlands, genetic studies commonly show signs of introgression between closely related, co‐occurring species. Here we assessed genetic variation in two sister species with geographically overlapping distributions in northern Australia. One species, Eucalyptus tetrodonta , is a dominant species in many lowland savannas. It is found on gravelly red‐lateritic to sandy soils, with a large distribution spanning over 2000 km east‐to‐west and 1000 km north‐to‐south, from the Kimberley region of Western Australia to northern Queensland. The other, E. megasapala , was taxonomically separated from E. tetrodonta in 2006 on the basis of its larger sepals, prominently ribbed buds and operculum, and fruit and peduncle shape. It typically occurs on rocky substrates in northeast Queensland, within the range of E. tetrodonta , where the two species can form stands within a few hundred metres of one another. Contrary to expectations, DArTseq genotyping showed strong differentiation between the two species ( F ST : 0.28) and little evidence of genetic admixture. Analyses of data from the Australasian Virtual Herbarium showed significant differences in flowering times between the two species. SNP outlier analyses identified multiple loci potentially under selection that are associated with differences between the two species, including the gene FT‐interacting protein 7 (FTIP7), which is known to modulate flowering time in plants. Based on current data, it is unclear whether differentiation of these species is the product of parapatric/sympatric speciation or if it was allopatric with secondary geographic overlap. Within E. tetrodonta , genetic variation showed a strong signal of isolation‐by‐distance, with an east–west trend in the pattern of genetic relatedness. The most substantial genetic break in E. tetrodonta was associated with the Carpentarian Gap, a region of seasonally arid, alluvial plains on the southern margin of the Gulf of Carpentaria known as a biogeographic barrier for other Australian biota.
In the large genus , which dominates most of Australia's open forests and woodlands, genetic studies commonly show signs of introgression between closely related, co-occurring species. Here we assessed genetic variation in two sister species with geographically overlapping distributions in northern Australia. One species, , is a dominant species in many lowland savannas. It is found on gravelly red-lateritic to sandy soils, with a large distribution spanning over 2000 km east-to-west and 1000 km north-to-south, from the Kimberley region of Western Australia to northern Queensland. The other, , was taxonomically separated from in 2006 on the basis of its larger sepals, prominently ribbed buds and operculum, and fruit and peduncle shape. It typically occurs on rocky substrates in northeast Queensland, within the range of , where the two species can form stands within a few hundred metres of one another. Contrary to expectations, DArTseq genotyping showed strong differentiation between the two species ( : 0.28) and little evidence of genetic admixture. Analyses of data from the Australasian Virtual Herbarium showed significant differences in flowering times between the two species. SNP outlier analyses identified multiple loci potentially under selection that are associated with differences between the two species, including the gene FT-interacting protein 7 (FTIP7), which is known to modulate flowering time in plants. Based on current data, it is unclear whether differentiation of these species is the product of parapatric/sympatric speciation or if it was allopatric with secondary geographic overlap. Within , genetic variation showed a strong signal of isolation-by-distance, with an east-west trend in the pattern of genetic relatedness. The most substantial genetic break in was associated with the Carpentarian Gap, a region of seasonally arid, alluvial plains on the southern margin of the Gulf of Carpentaria known as a biogeographic barrier for other Australian biota.
Author Orel, Harvey K.
Docherty, Philip G.
Cantrill, David J.
Udovicic, Frank
Murphy, Daniel J.
Franklin, Donald C.
Fowler, Rachael M.
Fahey, Patrick S.
Bayly, Michael J.
Lewis, Donna
White, Adam
McLay, Todd G. B.
AuthorAffiliation 1 School of BioSciences, the University of Melbourne Parkville Victoria Australia
4 Department of the Environment, Tourism, Science and Innovation Queensland Herbarium and Biodiversity Science Toowong Queensland Australia
3 Royal Botanic Gardens Victoria Melbourne Victoria Australia
5 Queensland Alliance for Agriculture and Food Innovation, the University of Queensland St Lucia Queensland Australia
8 Independent Scholar Cable Beach Western Australia Australia
6 Research Institute for Environment & Livelihoods, Charles Darwin University Darwin Northwest Territories Australia
7 Terrestrial Ecosystem Research Network (TERN) University of Adelaide Adelaide South Australia Australia
2 National Biodiversity DNA Library Environomics, NCMI, CSIRO Parkville Victoria Australia
9 Australian National Herbarium, Centre for Australian National Biodiversity Research Canberra Australian Capital Territory Australia
AuthorAffiliation_xml – name: 2 National Biodiversity DNA Library Environomics, NCMI, CSIRO Parkville Victoria Australia
– name: 5 Queensland Alliance for Agriculture and Food Innovation, the University of Queensland St Lucia Queensland Australia
– name: 3 Royal Botanic Gardens Victoria Melbourne Victoria Australia
– name: 8 Independent Scholar Cable Beach Western Australia Australia
– name: 7 Terrestrial Ecosystem Research Network (TERN) University of Adelaide Adelaide South Australia Australia
– name: 9 Australian National Herbarium, Centre for Australian National Biodiversity Research Canberra Australian Capital Territory Australia
– name: 1 School of BioSciences, the University of Melbourne Parkville Victoria Australia
– name: 4 Department of the Environment, Tourism, Science and Innovation Queensland Herbarium and Biodiversity Science Toowong Queensland Australia
– name: 6 Research Institute for Environment & Livelihoods, Charles Darwin University Darwin Northwest Territories Australia
Author_xml – sequence: 1
  givenname: Harvey K.
  surname: Orel
  fullname: Orel, Harvey K.
  organization: School of BioSciences, the University of Melbourne
– sequence: 2
  givenname: Todd G. B.
  surname: McLay
  fullname: McLay, Todd G. B.
  organization: Royal Botanic Gardens Victoria
– sequence: 3
  givenname: Daniel J.
  surname: Murphy
  fullname: Murphy, Daniel J.
  organization: Royal Botanic Gardens Victoria
– sequence: 4
  givenname: David J.
  surname: Cantrill
  fullname: Cantrill, David J.
  organization: Royal Botanic Gardens Victoria
– sequence: 5
  givenname: Frank
  surname: Udovicic
  fullname: Udovicic, Frank
  organization: Royal Botanic Gardens Victoria
– sequence: 6
  givenname: Patrick S.
  surname: Fahey
  fullname: Fahey, Patrick S.
  organization: Queensland Alliance for Agriculture and Food Innovation, the University of Queensland
– sequence: 7
  givenname: Donald C.
  surname: Franklin
  fullname: Franklin, Donald C.
  organization: Research Institute for Environment & Livelihoods, Charles Darwin University
– sequence: 8
  givenname: Donna
  surname: Lewis
  fullname: Lewis, Donna
  organization: University of Adelaide
– sequence: 9
  givenname: Philip G.
  surname: Docherty
  fullname: Docherty, Philip G.
  organization: Independent Scholar
– sequence: 10
  givenname: Adam
  surname: White
  fullname: White, Adam
  organization: Australian National Herbarium, Centre for Australian National Biodiversity Research
– sequence: 11
  givenname: Michael J.
  surname: Bayly
  fullname: Bayly, Michael J.
  organization: School of BioSciences, the University of Melbourne
– sequence: 12
  givenname: Rachael M.
  orcidid: 0000-0002-8953-7036
  surname: Fowler
  fullname: Fowler, Rachael M.
  email: rachael.fowler@unimelb.edu.au
  organization: Royal Botanic Gardens Victoria
BackLink https://www.ncbi.nlm.nih.gov/pubmed/40552100$$D View this record in MEDLINE/PubMed
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Copyright_xml – notice: 2025 The Author(s). published by British Ecological Society and John Wiley & Sons Ltd.
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Thu Aug 21 00:35:36 EDT 2025
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Issue 6
Keywords Eudesmia
Eucalyptus
Australia
introgression
sister speciation
phylogeography
Language English
License Attribution
2025 The Author(s). Ecology and Evolution published by British Ecological Society and John Wiley & Sons Ltd.
This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
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Notes Funding
This work was supported by Eucalypt Australia, 59 735 884 485.
Harvey Orel and Todd McLay should be considered joint first author.
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Funding: This work was supported by Eucalypt Australia, 59 735 884 485.
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Snippet ABSTRACT In the large genus Eucalyptus, which dominates most of Australia's open forests and woodlands, genetic studies commonly show signs of introgression...
In the large genus Eucalyptus , which dominates most of Australia's open forests and woodlands, genetic studies commonly show signs of introgression between...
In the large genus , which dominates most of Australia's open forests and woodlands, genetic studies commonly show signs of introgression between closely...
ABSTRACT In the large genus Eucalyptus, which dominates most of Australia's open forests and woodlands, genetic studies commonly show signs of introgression...
In the large genus Eucalyptus, which dominates most of Australia's open forests and woodlands, genetic studies commonly show signs of introgression between...
In the large genus Eucalyptus , which dominates most of Australia's open forests and woodlands, genetic studies commonly show signs of introgression between...
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SubjectTerms Alluvial plains
Australia
Biodiversity
Biogeography
Biota
Climate change
Differentiation
Dominant species
Eucalyptus
Eudesmia
Flowering
Genetic analysis
Genetic diversity
Genomes
Genotyping
Gravel
Interspecific hybridization
introgression
Operculum
Phylogenetics
phylogeography
Plants (botany)
Sandy soils
Sepals
Sibling species
Single-nucleotide polymorphism
sister speciation
Speciation
Sympatric populations
Woodlands
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Title Genetic Differentiation of Geographically Overlapping Sister Species of Eucalyptus in Northern Australia
URI https://onlinelibrary.wiley.com/doi/abs/10.1002%2Fece3.71454
https://www.ncbi.nlm.nih.gov/pubmed/40552100
https://www.proquest.com/docview/3224304577
https://www.proquest.com/docview/3223635106
https://pubmed.ncbi.nlm.nih.gov/PMC12183611
https://doaj.org/article/f896e63cee08497e934157a3c39c1607
Volume 15
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