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Keywords: 631/326/2565; 631/45/320; 631/92/605; 631/92/630; 692/699/1503/257; Amides; Amides - chemistry; Amides - metabolism; Amino acids; Animals; Bifidobacterium - metabolism; Bile; Bile acids; Bile Acids and Salts - chemistry; Bile Acids and Salts - metabolism; Biomarkers; CD4 antigen; CD4-Positive T-Lymphocytes - immunology; CD4-Positive T-Lymphocytes - metabolism; Cell culture; Clostridium - metabolism; Cohort Studies; Crohn Disease - metabolism; Crohn's disease; Datasets; Enterococcus - metabolism; Esters; Esters - chemistry; Esters - metabolism; Fatty acids; Fatty Acids - chemistry; Fatty Acids - metabolism; Humanities and Social Sciences; Humans; Inflammatory bowel disease; Inflammatory bowel diseases; Inflammatory Bowel Diseases - metabolism; Mass spectrometry; Mass spectroscopy; Metabolites; Metabolomics; Metabolomics - methods; Metadata; Molecular structure; multidisciplinary; Phenotype; Pregnane X Receptor - metabolism; Repositories; Reproducibility of Results; Science; Science (multidisciplinary); Scientific imaging; Spectra; Synthesis; Tandem Mass Spectrometry