FuncPEP: A Database of Functional Peptides Encoded by Non-Coding RNAs

• Published in: Non-coding RNA Vol. 6; no. 4; p. 41
• Main Authors: Dragomir, Mihnea P., Manyam, Ganiraju C., Ott, Leonie Florence, Berland, Léa, Knutsen, Erik, Ivan, Cristina, Lipovich, Leonard, Broom, Bradley M., Calin, George A.
• Format: Journal Article
• Language: English
• Published: Switzerland MDPI 23.09.2020; MDPI AG
• Subjects: Basale medisinske, odontologiske og veterinærmedisinske fag: 710; Basic medical, dental and veterinary science disciplines: 710; long non-coding RNAs; Medical disciplines: 700; Medisinske Fag: 700; ncRNA translation; ncRNA-encoded peptides; non-coding RNAs; small open reading frames; small peptides; VDP; small peptides; ncRNA-encoded peptides; micropeptides; ncRNA translation; non-coding RNAs; small open reading frames; long non-coding RNAs
• DOI: 10.3390/ncrna6040041
• ISSN: 2311-553X

Non-coding RNAs (ncRNAs) are essential players in many cellular processes, from normal development to oncogenic transformation. Initially, ncRNAs were defined as transcripts that lacked an open reading frame (ORF). However, multiple lines of evidence suggest that certain ncRNAs encode small peptides of less than 100 amino acids. The sequences encoding these peptides are known as small open reading frames (smORFs), many initiating with the traditional AUG start codon but terminating with atypical stop codons, suggesting a different biogenesis. The ncRNA-encoded peptides (ncPEPs) are gradually becoming appreciated as a new class of functional molecules that contribute to diverse cellular processes, and are deregulated in different diseases contributing to pathogenesis. As multiple publications have identified unique ncPEPs, we appreciated the need for assembling a new web resource that could gather information about these functional ncPEPs. We developed FuncPEP, a new database of functional ncRNA encoded peptides, containing all experimentally validated and functionally characterized ncPEPs. Currently, FuncPEP includes a comprehensive annotation of 112 functional ncPEPs and specific details regarding the ncRNA transcripts that encode these peptides. We believe that FuncPEP will serve as a platform for further deciphering the biologic significance and medical use of ncPEPs. The link for FuncPEP database can be found at the end of the Introduction Section.