Rapid detection of CITES-listed shark fin species by loop-mediated isothermal amplification assay with potential for field use
Shark fin is a delicacy in many Asian countries. Overexploitation of sharks for shark fin trading has led to a drastic reduction in shark population. To monitor international trade of shark fin products and protect the endangered species from further population decline, we present rapid, user-friend...
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| Published in | Scientific reports Vol. 10; no. 1; p. 4455 |
|---|---|
| Main Authors | , , , |
| Format | Journal Article |
| Language | English |
| Published |
London
Nature Publishing Group UK
10.03.2020
Nature Publishing Group |
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| Abstract | Shark fin is a delicacy in many Asian countries. Overexploitation of sharks for shark fin trading has led to a drastic reduction in shark population. To monitor international trade of shark fin products and protect the endangered species from further population decline, we present rapid, user-friendly and sensitive diagnostic loop-mediated isothermal amplification (LAMP) and effective polymerase chain reaction (PCR) assays for all twelve CITES-listed shark species. Species-specific LAMP and PCR primers were designed based on cytochrome oxidase I (COI) and NADH2 regions. Our LAMP and PCR assays have been tested on 291 samples from 93 shark and related species. Target shark species could be differentiated from non-target species within three hours from DNA extraction to LAMP assay. The LAMP assay reported here is a simple and robust solution for on-site detection of CITES-listed shark species with shark fin products. |
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| AbstractList | Shark fin is a delicacy in many Asian countries. Overexploitation of sharks for shark fin trading has led to a drastic reduction in shark population. To monitor international trade of shark fin products and protect the endangered species from further population decline, we present rapid, user-friendly and sensitive diagnostic loop-mediated isothermal amplification (LAMP) and effective polymerase chain reaction (PCR) assays for all twelve CITES-listed shark species. Species-specific LAMP and PCR primers were designed based on cytochrome oxidase I (COI) and NADH2 regions. Our LAMP and PCR assays have been tested on 291 samples from 93 shark and related species. Target shark species could be differentiated from non-target species within three hours from DNA extraction to LAMP assay. The LAMP assay reported here is a simple and robust solution for on-site detection of CITES-listed shark species with shark fin products. Shark fin is a delicacy in many Asian countries. Overexploitation of sharks for shark fin trading has led to a drastic reduction in shark population. To monitor international trade of shark fin products and protect the endangered species from further population decline, we present rapid, user-friendly and sensitive diagnostic loop-mediated isothermal amplification (LAMP) and effective polymerase chain reaction (PCR) assays for all twelve CITES-listed shark species. Species-specific LAMP and PCR primers were designed based on cytochrome oxidase I (COI) and NADH2 regions. Our LAMP and PCR assays have been tested on 291 samples from 93 shark and related species. Target shark species could be differentiated from non-target species within three hours from DNA extraction to LAMP assay. The LAMP assay reported here is a simple and robust solution for on-site detection of CITES-listed shark species with shark fin products.Shark fin is a delicacy in many Asian countries. Overexploitation of sharks for shark fin trading has led to a drastic reduction in shark population. To monitor international trade of shark fin products and protect the endangered species from further population decline, we present rapid, user-friendly and sensitive diagnostic loop-mediated isothermal amplification (LAMP) and effective polymerase chain reaction (PCR) assays for all twelve CITES-listed shark species. Species-specific LAMP and PCR primers were designed based on cytochrome oxidase I (COI) and NADH2 regions. Our LAMP and PCR assays have been tested on 291 samples from 93 shark and related species. Target shark species could be differentiated from non-target species within three hours from DNA extraction to LAMP assay. The LAMP assay reported here is a simple and robust solution for on-site detection of CITES-listed shark species with shark fin products. |
| ArticleNumber | 4455 |
| Author | But, Grace Wing-Chiu Wu, Hoi-Yan Shao, Kwang-Tsao Shaw, Pang-Chui |
| Author_xml | – sequence: 1 givenname: Grace Wing-Chiu surname: But fullname: But, Grace Wing-Chiu organization: School of Life Sciences, The Chinese University of Hong Kong – sequence: 2 givenname: Hoi-Yan surname: Wu fullname: Wu, Hoi-Yan organization: Institute of Chinese Medicine, The Chinese University of Hong Kong, Li Dak Sum Yip Yio Chin R & D Centre for Chinese Medicine, The Chinese University of Hong Kong – sequence: 3 givenname: Kwang-Tsao surname: Shao fullname: Shao, Kwang-Tsao organization: Systematics and Biodiversity Information Division, Biodiversity Research Center, Academia Sinica – sequence: 4 givenname: Pang-Chui surname: Shaw fullname: Shaw, Pang-Chui email: pcshaw@cuhk.edu.hk organization: School of Life Sciences, The Chinese University of Hong Kong, Institute of Chinese Medicine, The Chinese University of Hong Kong, Li Dak Sum Yip Yio Chin R & D Centre for Chinese Medicine, The Chinese University of Hong Kong |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/32157111$$D View this record in MEDLINE/PubMed |
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| Snippet | Shark fin is a delicacy in many Asian countries. Overexploitation of sharks for shark fin trading has led to a drastic reduction in shark population. To... |
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| SubjectTerms | 14/34 38/23 38/77 45/22 631/1647/1513/2216 704/829/826 CITES (Convention on International Trade in Endangered Species) Cytochrome oxidase I Endangered species Fish populations Humanities and Social Sciences International trade multidisciplinary Overexploitation Polymerase chain reaction Population decline Protected species Science Science (multidisciplinary) Sharks |
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| Title | Rapid detection of CITES-listed shark fin species by loop-mediated isothermal amplification assay with potential for field use |
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